Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041982_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:146545493:146548229:-1 gene:Zm00001d041982 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase1 description: isopentenyl transferase1
Sequence

ATGGCCCACCCCTCCGCCGCCGCCGCCGCCGTATCCTCCACGGCGCCCGCTGCAAACCCT
AGTTCTGGCGCCCGCGAGGAAGGAGGCGCCCGCTCTCCGCCGTCGCCGTCTCCGTCTCAG
AGGGGGCGGGCCAAGGTGGTGATCGTTATGGGCGCCACGGGCGCCGGCAAGTCGCGGCTG
GCCGTCGACCTCGCGGCCCACTTCGCCGGCGTCGAAGTGGTCAGCGCCGACTCCATGCAG
CTCTACCGCGGCCTCGACGTCCTCACCAACAAGGCTCCCCTCCACGAGCAGAACGGTGTT
CCTCATCATCTACTTAGCGTGATTGATCCCTCTGTCGAGTTCACTTGCCGTGATTTCCGC
GACCGTGCCGTGCCGATTATACAGGAAATAGTGGACCGCGGTGGCCTCCCTGTGGTTGTC
GGCGGCACAAACTTCTACATCCAGGCTCTCGTTAGCCCATTCCTCTTGGATGATATGGCA
GAAGAAATGCAGGGCTGTACTCTGAGAGATCACATAGATGATGGTCTTACTGATGAAGAT
GAAGGCAATGGGTTTGAACGCTTGAAGGAGATCGATCCTGTGGCTGCGCAGAGGATCCAT
CCAAACGACCATAGAAAAATCAAACGCTACCTCGAGTTGTATGCAACCACGGGTGCCCTA
CCCAGCGATCTGTTCCAAGGAGAGGCCGCTAAGAAATGGGGTCGGCCTAGTAACTCCAGA
CTCGACTGCTGTTTCCTGTGGGTAGATGCTGATCTTCAAGTCCTGGACAGTTATGTCAAC
AAAAGGGTCGATTGCATGATGGATGGTGGCCTGCTGGACGAAGTATGCAGCATATATGAT
GCGGATGCTGTCTATACCCAGGGGCTGCGGCAGGCTATTGGGGTTCGTGAGTTTGACGAG
TTTTTCAGAGCATATTTACCCAGAAAAGAATCTGGTGAGGGTTCCTGTGCAAGCCTGTTA
GGTATGCATGACGATCAGCTTAAGAGCTTGTTGGACGAAGCTGTTTCCCAGCTGAAGGCA
AACACTCGTAGACTAGTTCGACGTCAAAGACGGAGATTGCATCGGCTGAGTAAAGATTTT
GGGTGGAACTTGCATCGTGTTGACGCAACCGAAGCATTCTTCTGTGCCACTGACGACTCA
TGGCAAAAGAAAGTTGTCAAACCATGTGTGGATGTCGTAAGAAGGTTTTTGTCGGACAAT
TCCACTGTTTTGCCAAGCACAAGCGCAAGTGACCCCTCTTCAAGAGAGCTGTGGACGCAA
TATGTGTGCGAGGCCTGCGGCAACCGGGTGCTGCGAGGTGCGCACGAGTGGGAGCAGCAC
AGGCAAGGGCGAGGCCACCGGAAGCGAGTGCAGCGCCTGAAGCAGAAGAGCCTGAGGCCA
TGGCCATCGCTGCTGCCCCAAGACCGCAGCTGA

Peptide Sequence

PEP ID

Zm00001d041982_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:146545493:146548229:-1 gene:Zm00001d041982 transcript:Zm00001d041982_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase1 description: isopentenyl transferase1
Sequence

MAHPSAAAAAVSSTAPAANPSSGAREEGGARSPPSPSPSQRGRAKVVIVMGATGAGKSRL
AVDLAAHFAGVEVVSADSMQLYRGLDVLTNKAPLHEQNGVPHHLLSVIDPSVEFTCRDFR
DRAVPIIQEIVDRGGLPVVVGGTNFYIQALVSPFLLDDMAEEMQGCTLRDHIDDGLTDED
EGNGFERLKEIDPVAAQRIHPNDHRKIKRYLELYATTGALPSDLFQGEAAKKWGRPSNSR
LDCCFLWVDADLQVLDSYVNKRVDCMMDGGLLDEVCSIYDADAVYTQGLRQAIGVREFDE
FFRAYLPRKESGEGSCASLLGMHDDQLKSLLDEAVSQLKANTRRLVRRQRRRLHRLSKDF
GWNLHRVDATEAFFCATDDSWQKKVVKPCVDVVRRFLSDNSTVLPSTSASDPSSRELWTQ
YVCEACGNRVLRGAHEWEQHRQGRGHRKRVQRLKQKSLRPWPSLLPQDRS

Transcript Sequence

Transcript ID

Zm00001d041982_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:146545493:146548229:-1 gene:Zm00001d041982 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:isopentenyl transferase1 description: isopentenyl transferase1
Sequence

CTGACGGTTAGAGATGGCCCACCCCTCCGCCGCCGCCGCCGCCGTATCCTCCACGGCGCC
CGCTGCAAACCCTAGTTCTGGCGCCCGCGAGGAAGGAGGCGCCCGCTCTCCGCCGTCGCC
GTCTCCGTCTCAGAGGGGGCGGGCCAAGGTGGTGATCGTTATGGGCGCCACGGGCGCCGG
CAAGTCGCGGCTGGCCGTCGACCTCGCGGCCCACTTCGCCGGCGTCGAAGTGGTCAGCGC
CGACTCCATGCAGCTCTACCGCGGCCTCGACGTCCTCACCAACAAGGCTCCCCTCCACGA
GCAGAACGGTGTTCCTCATCATCTACTTAGCGTGATTGATCCCTCTGTCGAGTTCACTTG
CCGTGATTTCCGCGACCGTGCCGTGCCGATTATACAGGAAATAGTGGACCGCGGTGGCCT
CCCTGTGGTTGTCGGCGGCACAAACTTCTACATCCAGGCTCTCGTTAGCCCATTCCTCTT
GGATGATATGGCAGAAGAAATGCAGGGCTGTACTCTGAGAGATCACATAGATGATGGTCT
TACTGATGAAGATGAAGGCAATGGGTTTGAACGCTTGAAGGAGATCGATCCTGTGGCTGC
GCAGAGGATCCATCCAAACGACCATAGAAAAATCAAACGCTACCTCGAGTTGTATGCAAC
CACGGGTGCCCTACCCAGCGATCTGTTCCAAGGAGAGGCCGCTAAGAAATGGGGTCGGCC
TAGTAACTCCAGACTCGACTGCTGTTTCCTGTGGGTAGATGCTGATCTTCAAGTCCTGGA
CAGTTATGTCAACAAAAGGGTCGATTGCATGATGGATGGTGGCCTGCTGGACGAAGTATG
CAGCATATATGATGCGGATGCTGTCTATACCCAGGGGCTGCGGCAGGCTATTGGGGTTCG
TGAGTTTGACGAGTTTTTCAGAGCATATTTACCCAGAAAAGAATCTGGTGAGGGTTCCTG
TGCAAGCCTGTTAGGTATGCATGACGATCAGCTTAAGAGCTTGTTGGACGAAGCTGTTTC
CCAGCTGAAGGCAAACACTCGTAGACTAGTTCGACGTCAAAGACGGAGATTGCATCGGCT
GAGTAAAGATTTTGGGTGGAACTTGCATCGTGTTGACGCAACCGAAGCATTCTTCTGTGC
CACTGACGACTCATGGCAAAAGAAAGTTGTCAAACCATGTGTGGATGTCGTAAGAAGGTT
TTTGTCGGACAATTCCACTGTTTTGCCAAGCACAAGCGCAAGTGACCCCTCTTCAAGAGA
GCTGTGGACGCAATATGTGTGCGAGGCCTGCGGCAACCGGGTGCTGCGAGGTGCGCACGA
GTGGGAGCAGCACAGGCAAGGGCGAGGCCACCGGAAGCGAGTGCAGCGCCTGAAGCAGAA
GAGCCTGAGGCCATGGCCATCGCTGCTGCCCCAAGACCGCAGCTGATGGTAACTTTTTCA
CAGCAGAACCGGCGAGAAGTGGGACGGGGACGTTGACGTGGACATGGTCGTCTCGTCCCA
CCCAAAAAAGCGTGCCAGCCTGACAGCGACATGCTTTCCCAATCCCGAATTCCTGGCACG
TCGACGGGGGGACTACCTCCATGCCTTTTAGCAGCGGAAGAAGCAGGCACCAAAGAACTG
CTTATCAAAAGTATTGTACCACACGTACGACGGGTCTAGAAGCCACAGAAACGTAGTGTG
GAAGTGGATAGATACTTGAACAATGGTCCATCTTTCTATACTGCTAAAGTTTAGCATATG
CTAAGGAGGTGTTTAAGATTGCTAAAA