Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041948_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:3:144968294:144974085:1 gene:Zm00001d041948 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAND family protein
Sequence

ATGGACCCGCCCAACCCTAACCCCAACGATGCCCCGTCGCTCCCAGCCGAATCCGCGGCC
AGACTCGCCGCCCTCTCCCTTTGTGGCACCAGGGACCTTCCCCCGGACTTCCACACCGCC
GAGATCCTCGACGACGACGAGGGCTACCTCACCTCCGCGTCCAGAGGCGGGAGCAGCACC
TCCGCGTGGAAGGAGGCGCCCGAGGGACTCCACGACGATGACAAGGATGGGGACGATGTC
TCCCAGCCCAGCCCCAGAAGCAGCGGATACGCTGGCGAGCGCGGAAGCAGCCTTGATGAC
GACGCCGACCCCGACCCCGACCCCGACCAGGATTGGGCGCGCGGCAAGAAGCATCCCCAC
GAGGACGATGCTTCCTCTTCGTGGAGGAAGAGGAAAAAACATTTCTTCATTCTGAGCAAT
TCTGGCAAGCCAATATATTCCAGGTATGGGGATGAGCACAAGCTAGCCGGATTTTCTGCT
ACGCTGCAAGCAATCATTTCCTTTGTCGAGAACAGTGGCGACCATATCAAATTTGTGAGA
GCTGGCAAACATCAGATAGTTTTCCTTGTGAAGGGGCCAATATATTTAGTTTGTATAAGC
TGCACAGAAGAGTCATATGAAGGACTGAGGGGGCAACTAGAGCTCATGTATGGTCAGTTG
TTGCTTATTTTGACAAAGTCAGTCAATAAGTGCTTTGAGAAGAACCCCAGATTCGATATG
GCAACATTGCTTGGTGGCACTGATGCAGTTTTCCTATCTCTTATACATGCATTCAGCTGG
AATCCGGCTACTTTTCTTCATGCCTACACATGTCTTCCTCTTGCTCAATCAACAAGGCAG
GCAGCTAGTGCAGTTTTGCAGGACATCGCTGATTCAGGGGTTCTATTTGCGTTATTGATG
TGTGAGCACAAGGTTATTAGTCTTGTTGGAGCACAAAAGGCAACTTTGCATCCTGATGAT
ATTTTATTACTTGCGAATTTCATTCTGTCCTCTGGATCTTTTAGAACTTCAGAGTCTTTT
GTACCCATATGTTTGCCAAGATACAATCCTATGGCCTACTTGCATGCTTATGTTCATTTT
TTTGACGAACATACATATGTGACTTTGCTTACTACACGATCAGATGCTTTTTATGATCTC
AAAGATTCCAGGGCCCACATTCAAAATGCTCTTTTAAAGTCAAATGTCCTCATCGAAGTC
CAAAGATCTTTACATGAGAATGCATTGCGTGTTGAGGATCTCCCAACCAACCCGTCTTCT
CAATCTGCATCACACCCTCCAGAGTCCTCTCAAGACATTAGTTCACAATCTTTGTCTTCT
GAAATGGCAATTGGAGGACCAGGTGGACTATGGCATTTTATATATAAAAGCATTTACCTT
GACCAGTTTGTGTCATCAGAATTTCCCTCACCCATAAGTAACAAAAAGCAGAAGAAGGGA
TTGTACAAAGCTTACCAAAAATTGTATGCATCCATGCATGATAAAGCAACTGGTCCACAC
AAAACTCAATTCAGAAGAGATGAGGATTATGTTCTATTTTGCTGGATAACCCAGGATTTC
GAACTATATGCAGCCTTTAATCCACTGGCTGATAAGACTCAAGCAATCAAGATGTGCAAT
AGAGTATGCCAATGGGTGAGGGATTTAGAAAATGAGATATTCGTGTATGGAGAAAGCACC
CTTTCCTGGTGA

Peptide Sequence

PEP ID

Zm00001d041948_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:3:144968294:144974085:1 gene:Zm00001d041948 transcript:Zm00001d041948_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAND family protein
Sequence

MDPPNPNPNDAPSLPAESAARLAALSLCGTRDLPPDFHTAEILDDDEGYLTSASRGGSST
SAWKEAPEGLHDDDKDGDDVSQPSPRSSGYAGERGSSLDDDADPDPDPDQDWARGKKHPH
EDDASSSWRKRKKHFFILSNSGKPIYSRYGDEHKLAGFSATLQAIISFVENSGDHIKFVR
AGKHQIVFLVKGPIYLVCISCTEESYEGLRGQLELMYGQLLLILTKSVNKCFEKNPRFDM
ATLLGGTDAVFLSLIHAFSWNPATFLHAYTCLPLAQSTRQAASAVLQDIADSGVLFALLM
CEHKVISLVGAQKATLHPDDILLLANFILSSGSFRTSESFVPICLPRYNPMAYLHAYVHF
FDEHTYVTLLTTRSDAFYDLKDSRAHIQNALLKSNVLIEVQRSLHENALRVEDLPTNPSS
QSASHPPESSQDISSQSLSSEMAIGGPGGLWHFIYKSIYLDQFVSSEFPSPISNKKQKKG
LYKAYQKLYASMHDKATGPHKTQFRRDEDYVLFCWITQDFELYAAFNPLADKTQAIKMCN
RVCQWVRDLENEIFVYGESTLSW

Transcript Sequence

Transcript ID

Zm00001d041948_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:144968294:144974085:1 gene:Zm00001d041948 gene_biotype:protein_coding transcript_biotype:protein_coding description:SAND family protein
Sequence

GGGGAGGGGAGGACTGGAGAAGCCTGGCCAGCCATGGACCCGCCCAACCCTAACCCCAAC
GATGCCCCGTCGCTCCCAGCCGAATCCGCGGCCAGACTCGCCGCCCTCTCCCTTTGTGGC
ACCAGGGACCTTCCCCCGGACTTCCACACCGCCGAGATCCTCGACGACGACGAGGGCTAC
CTCACCTCCGCGTCCAGAGGCGGGAGCAGCACCTCCGCGTGGAAGGAGGCGCCCGAGGGA
CTCCACGACGATGACAAGGATGGGGACGATGTCTCCCAGCCCAGCCCCAGAAGCAGCGGA
TACGCTGGCGAGCGCGGAAGCAGCCTTGATGACGACGCCGACCCCGACCCCGACCCCGAC
CAGGATTGGGCGCGCGGCAAGAAGCATCCCCACGAGGACGATGCTTCCTCTTCGTGGAGG
AAGAGGAAAAAACATTTCTTCATTCTGAGCAATTCTGGCAAGCCAATATATTCCAGGTAT
GGGGATGAGCACAAGCTAGCCGGATTTTCTGCTACGCTGCAAGCAATCATTTCCTTTGTC
GAGAACAGTGGCGACCATATCAAATTTGTGAGAGCTGGCAAACATCAGATAGTTTTCCTT
GTGAAGGGGCCAATATATTTAGTTTGTATAAGCTGCACAGAAGAGTCATATGAAGGACTG
AGGGGGCAACTAGAGCTCATGTATGGTCAGTTGTTGCTTATTTTGACAAAGTCAGTCAAT
AAGTGCTTTGAGAAGAACCCCAGATTCGATATGGCAACATTGCTTGGTGGCACTGATGCA
GTTTTCCTATCTCTTATACATGCATTCAGCTGGAATCCGGCTACTTTTCTTCATGCCTAC
ACATGTCTTCCTCTTGCTCAATCAACAAGGCAGGCAGCTAGTGCAGTTTTGCAGGACATC
GCTGATTCAGGGGTTCTATTTGCGTTATTGATGTGTGAGCACAAGGTTATTAGTCTTGTT
GGAGCACAAAAGGCAACTTTGCATCCTGATGATATTTTATTACTTGCGAATTTCATTCTG
TCCTCTGGATCTTTTAGAACTTCAGAGTCTTTTGTACCCATATGTTTGCCAAGATACAAT
CCTATGGCCTACTTGCATGCTTATGTTCATTTTTTTGACGAACATACATATGTGACTTTG
CTTACTACACGATCAGATGCTTTTTATGATCTCAAAGATTCCAGGGCCCACATTCAAAAT
GCTCTTTTAAAGTCAAATGTCCTCATCGAAGTCCAAAGATCTTTACATGAGAATGCATTG
CGTGTTGAGGATCTCCCAACCAACCCGTCTTCTCAATCTGCATCACACCCTCCAGAGTCC
TCTCAAGACATTAGTTCACAATCTTTGTCTTCTGAAATGGCAATTGGAGGACCAGGTGGA
CTATGGCATTTTATATATAAAAGCATTTACCTTGACCAGTTTGTGTCATCAGAATTTCCC
TCACCCATAAGTAACAAAAAGCAGAAGAAGGGATTGTACAAAGCTTACCAAAAATTGTAT
GCATCCATGCATGATAAAGCAACTGGTCCACACAAAACTCAATTCAGAAGAGATGAGGAT
TATGTTCTATTTTGCTGGATAACCCAGGATTTCGAACTATATGCAGCCTTTAATCCACTG
GCTGATAAGACTCAAGCAATCAAGATGTGCAATAGAGTATGCCAATGGGTGAGGGATTTA
GAAAATGAGATATTCGTGTATGGAGAAAGCACCCTTTCCTGGTGATATGTTGTCCTGTGT
GTAATAACTTGTTATGCCTATGTTACATTTTTTTTGTTGAAAGTTTTTTTTGATGTTACT
TGTACCGACACAGGCAGTACCATCGTTGTTGGGGAGGTGTATGAGGGGGCTAAGTTTGTC
GCACTTTTGACATTTTCTCAGGAATGGTGCTCCTTTTTTTTATCTGTCTGATGAACTGGA
GGTTTTTTTTCTTC