Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041926_T013
CDS Infomation

cds chromosome:B73_RefGen_v4:3:143902478:143907160:1 gene:Zm00001d041926 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor LHW
Sequence

ATGGCCTCACAAATTCATGTTATTGGTGAAGGTACCATTGGCCGTGCTGCTTTCACTGGA
AATCATCAATGGATTGTCCATGATCCTGCCACTGCCAGTGATCACAATCTCAGACCGGAG
GTTGTTGCTGAGATGAATCATCAGTTTGCAGCTGGCATTCAGACTATTGCAATTATTCCC
GTGTTACCACGAGGTGTACTGCAGCTAGGCGCTACAAGTGTGGTAGTGGAAAATACCAAC
CTTGTGCTCCAGTATAAGAAGCTGTGTTCTCAGCTGAACAATCGGTCGAGTATGGCTTCA
TCGTCATCTGTTAAAAACGATTTGAACCCTAAAGTTCAGTCACACCCTTTGAATGGTCCC
ACAAGTATATACCCTGCAGATACGCGCTCAAAGTTTTTTAGTGGATCCCCAATGTCATAT
CAACAGTGTTATGGTCCTGATGGCACAACTGTGTCTAGTAGTATATTGACAAACATGGGC
AGTAATGCTTCAATGCTCATGGTTGCACAGAGAAATGCTCAAGTGGGTAAAGAACACATT
CTATATGCCCCTGACATGAGGTTCAGACTGCAAAACCCTTACTGTGACAGGAGAGTTGAG
AGTAACACCCAAAGTAGTGTTGTGAGCTCTGGTTTTATCTCGTCGATCTCAGCATCAATG
GAAAGACATCCATGGATGACCAACAGTCAACAGTTAGAACAAGGAAACACTGGAGAACCA
TCAGATCTCAGAAATGTTCTCTTGAAATCTCTTGCATACCGTCACCCTTTGTTCAATGAC
AACACAAACATGGTTTTAGTGCATGGCAAAGGCCAGGTGCCAGGTTTTGTTAATGGTCAT
GGGGGTTTTGATTTTCTCCCAGAAGGTACTATGGTATTCAAGGGTAACCTGTATGGCAGC
ACAGCAAATCAAATTTTAGACCAAAGATGCAGTTCTACTTCTGAGATGTCAGGGCACAGA
CCAACTATTTCATACAAAATGCCCCAATCTACCCAATGTGTTAGGAAAACAGAGTCTCCA
AAGAGAGAGACATGCGAAACTTCTGCTGCTCTGTCATCTGGCTCTGATATTCAGGTTTCT
GGTGGCCTGAAAACAGTCATTTCTCAAGAGAATAATATGAGTAGCTCAGATCTTATTAGC
CCAAAAAAACCCAATGAAGTGCATGCCCCTACTGGTGCAATTGTTAAAGCTGTCAAGAAT
ATGGATAGCCGCAGGCTCCCAGACATATCTAATGAGAGATCACCTCCGCTTCGTATGGAT
GCTGCTGCAGAAAGTGATTTGTTTGACATGTTTGATTCTGAAGTTCATCATTTGTGCCGC
AATGTGGATAATGATCTTACCTGTAAAGCTGCAAAACCCGAGAATTCAAATAGAGATGTA
CCTGAATCCTCTGTTCGTCTTGGTTCCTCTTCATCTTTCAATTCAGTGGATGACAAGTTC
CCTTATTCTGGGATCTTCTCACTAACCGATACCGACCAACTTTTGGATGCGGTTGTCTCC
AATGTCAATCCTGGTGGCAAGCAGATCTCTGGTGACAGTACTTCTTGCAAGACTTCAGCG
GCAGATATTCCTACCACTTCGTATTGTCGCTTAAAAGAACCAAAGCAGTCCGAATCATCT
TCACCTTTGCTAATCAAGAATGAGTTAGCCGTTTCAAATTTTGTCAAACAGTCATCTTTC
CAAGAAAAGGCAGAGGATGGCTGTCTTTCTCAAAATAATGCAATACAGAAGTCTCAGATA
CGCCTCTGGATAGAGAACGGACAGAACATGAAATGTGAAAGTGCCTCAGCCTCAAACAGT
AAGGGCGTTGATATGTCAAGCAAGGCAAGTCGAAAGAGGTCTCGACCAGGAGAGAATCCT
AAGCCACGACCAAAGGACCGCCAGCTTATTCAGGATCGTATAAAGGAGCTCCGGGAACTC
GTACCTAATGGGGCAAAGTGTAGTATTGATGCATTACTGGAGAAGACCATTAAGCACATG
CTTTTCTTGCAAAGTGTGACAAAGCATGCAGATAACCTCAAGGACTCAAACAAATCTGAT
ATTCTTGGTGGTGAGAATGGTCCACTCAAAGACTACTTCGAAGGTGGTGCAACTTGGGCC
TTGGATGTTGGTAGTCGATCTATGACGTGCCCAATCATTGTCGAGGATCTCGAGCGGCCT
CGTCAGATGCTTGTGGAGATGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGAC
TTCATTAAAGGACTAGGATTAACCATCTTAAGGGGCGTTATGGAAGCACGCAAAAATAAA
ATCTGGGCACGGTTCACTGTTGAGGCCAACAGAAATGTGACTAGAATGGAAATCTTCCTT
TCCCTAATGCGCATGCTGGAACCGAGTTGTGGAGCAGGAGAGAATTCTAATAACAACATA
AAAATGCCTCTTGGGATTGTGCAGTATCCCATAATCCCTGCGACAGGTCATCTTAGGTGA

Peptide Sequence

PEP ID

Zm00001d041926_P013
PEP Infomation

pep chromosome:B73_RefGen_v4:3:143902478:143907160:1 gene:Zm00001d041926 transcript:Zm00001d041926_T013 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor LHW
Sequence

MASQIHVIGEGTIGRAAFTGNHQWIVHDPATASDHNLRPEVVAEMNHQFAAGIQTIAIIP
VLPRGVLQLGATSVVVENTNLVLQYKKLCSQLNNRSSMASSSSVKNDLNPKVQSHPLNGP
TSIYPADTRSKFFSGSPMSYQQCYGPDGTTVSSSILTNMGSNASMLMVAQRNAQVGKEHI
LYAPDMRFRLQNPYCDRRVESNTQSSVVSSGFISSISASMERHPWMTNSQQLEQGNTGEP
SDLRNVLLKSLAYRHPLFNDNTNMVLVHGKGQVPGFVNGHGGFDFLPEGTMVFKGNLYGS
TANQILDQRCSSTSEMSGHRPTISYKMPQSTQCVRKTESPKRETCETSAALSSGSDIQVS
GGLKTVISQENNMSSSDLISPKKPNEVHAPTGAIVKAVKNMDSRRLPDISNERSPPLRMD
AAAESDLFDMFDSEVHHLCRNVDNDLTCKAAKPENSNRDVPESSVRLGSSSSFNSVDDKF
PYSGIFSLTDTDQLLDAVVSNVNPGGKQISGDSTSCKTSAADIPTTSYCRLKEPKQSESS
SPLLIKNELAVSNFVKQSSFQEKAEDGCLSQNNAIQKSQIRLWIENGQNMKCESASASNS
KGVDMSSKASRKRSRPGENPKPRPKDRQLIQDRIKELRELVPNGAKCSIDALLEKTIKHM
LFLQSVTKHADNLKDSNKSDILGGENGPLKDYFEGGATWALDVGSRSMTCPIIVEDLERP
RQMLVEMLCEDRGIFLEIADFIKGLGLTILRGVMEARKNKIWARFTVEANRNVTRMEIFL
SLMRMLEPSCGAGENSNNNIKMPLGIVQYPIIPATGHLR

Transcript Sequence

Transcript ID

Zm00001d041926_T013
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:143902478:143907160:1 gene:Zm00001d041926 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transcription factor LHW
Sequence

AGGACGGTTCCTGCGGCCACGCCTCATGCTATACCGGATCTGATGCTCCTGAAGCTGGGT
GTGAGCCGGGCACCAGTGTGTGCACGCTTGTTGGGAAGGTTATGGCCTCACAAATTCATG
TTATTGGTGAAGGTACCATTGGCCGTGCTGCTTTCACTGGAAATCATCAATGGATTGTCC
ATGATCCTGCCACTGCCAGTGATCACAATCTCAGACCGGAGGTTGTTGCTGAGATGAATC
ATCAGTTTGCAGCTGGCATTCAGACTATTGCAATTATTCCCGTGTTACCACGAGGTGTAC
TGCAGCTAGGCGCTACAAGTGTGGTAGTGGAAAATACCAACCTTGTGCTCCAGTATAAGA
AGCTGTGTTCTCAGCTGAACAATCGGTCGAGTATGGCTTCATCGTCATCTGTTAAAAACG
ATTTGAACCCTAAAGTTCAGTCACACCCTTTGAATGGTCCCACAAGTATATACCCTGCAG
ATACGCGCTCAAAGTTTTTTAGTGGATCCCCAATGTCATATCAACAGTGTTATGGTCCTG
ATGGCACAACTGTGTCTAGTAGTATATTGACAAACATGGGCAGTAATGCTTCAATGCTCA
TGGTTGCACAGAGAAATGCTCAAGTGGGTAAAGAACACATTCTATATGCCCCTGACATGA
GGTTCAGACTGCAAAACCCTTACTGTGACAGGAGAGTTGAGAGTAACACCCAAAGTAGTG
TTGTGAGCTCTGGTTTTATCTCGTCGATCTCAGCATCAATGGAAAGACATCCATGGATGA
CCAACAGTCAACAGTTAGAACAAGGAAACACTGGAGAACCATCAGATCTCAGAAATGTTC
TCTTGAAATCTCTTGCATACCGTCACCCTTTGTTCAATGACAACACAAACATGGTTTTAG
TGCATGGCAAAGGCCAGGTGCCAGGTTTTGTTAATGGTCATGGGGGTTTTGATTTTCTCC
CAGAAGGTACTATGGTATTCAAGGGTAACCTGTATGGCAGCACAGCAAATCAAATTTTAG
ACCAAAGATGCAGTTCTACTTCTGAGATGTCAGGGCACAGACCAACTATTTCATACAAAA
TGCCCCAATCTACCCAATGTGTTAGGAAAACAGAGTCTCCAAAGAGAGAGACATGCGAAA
CTTCTGCTGCTCTGTCATCTGGCTCTGATATTCAGGTTTCTGGTGGCCTGAAAACAGTCA
TTTCTCAAGAGAATAATATGAGTAGCTCAGATCTTATTAGCCCAAAAAAACCCAATGAAG
TGCATGCCCCTACTGGTGCAATTGTTAAAGCTGTCAAGAATATGGATAGCCGCAGGCTCC
CAGACATATCTAATGAGAGATCACCTCCGCTTCGTATGGATGCTGCTGCAGAAAGTGATT
TGTTTGACATGTTTGATTCTGAAGTTCATCATTTGTGCCGCAATGTGGATAATGATCTTA
CCTGTAAAGCTGCAAAACCCGAGAATTCAAATAGAGATGTACCTGAATCCTCTGTTCGTC
TTGGTTCCTCTTCATCTTTCAATTCAGTGGATGACAAGTTCCCTTATTCTGGGATCTTCT
CACTAACCGATACCGACCAACTTTTGGATGCGGTTGTCTCCAATGTCAATCCTGGTGGCA
AGCAGATCTCTGGTGACAGTACTTCTTGCAAGACTTCAGCGGCAGATATTCCTACCACTT
CGTATTGTCGCTTAAAAGAACCAAAGCAGTCCGAATCATCTTCACCTTTGCTAATCAAGA
ATGAGTTAGCCGTTTCAAATTTTGTCAAACAGTCATCTTTCCAAGAAAAGGCAGAGGATG
GCTGTCTTTCTCAAAATAATGCAATACAGAAGTCTCAGATACGCCTCTGGATAGAGAACG
GACAGAACATGAAATGTGAAAGTGCCTCAGCCTCAAACAGTAAGGGCGTTGATATGTCAA
GCAAGGCAAGTCGAAAGAGGTCTCGACCAGGAGAGAATCCTAAGCCACGACCAAAGGACC
GCCAGCTTATTCAGGATCGTATAAAGGAGCTCCGGGAACTCGTACCTAATGGGGCAAAGT
GTAGTATTGATGCATTACTGGAGAAGACCATTAAGCACATGCTTTTCTTGCAAAGTGTGA
CAAAGCATGCAGATAACCTCAAGGACTCAAACAAATCTGATATTCTTGGTGGTGAGAATG
GTCCACTCAAAGACTACTTCGAAGGTGGTGCAACTTGGGCCTTGGATGTTGGTAGTCGAT
CTATGACGTGCCCAATCATTGTCGAGGATCTCGAGCGGCCTCGTCAGATGCTTGTGGAGA
TGCTTTGTGAGGATAGAGGTATCTTCTTGGAGATAGCTGACTTCATTAAAGGACTAGGAT
TAACCATCTTAAGGGGCGTTATGGAAGCACGCAAAAATAAAATCTGGGCACGGTTCACTG
TTGAGGCCAACAGAAATGTGACTAGAATGGAAATCTTCCTTTCCCTAATGCGCATGCTGG
AACCGAGTTGTGGAGCAGGAGAGAATTCTAATAACAACATAAAAATGCCTCTTGGGATTG
TGCAGTATCCCATAATCCCTGCGACAGGTCATCTTAGGTGAGCCAGCCAGCACAAAGATA
ACAGGATGCATCTTTGAAATGCTAAGAGCGGGGGGAGGTCCACCCACTTCTGCCATGACT
AGCATTGCCAACCCAGGACGAGCTGGAATCTCGTGACATGCGGTGCATCGTCCCTGCAGT
GTGCATTCGGAAAGCCTAACAGTAGACGGGAACATCGACATGGATAGTTGGTTCGCCGGA
TGATCGACGTTTTGACTGTAATCTTAGTTTATGTTTGTTGCTGATGCTTTAGCCTTTTGT
TAGTCTGCATATTAGTGAGTGAATTTTGTTATGTTCTGCTGCTGAATGGAAATTCTGAGT
TGAATTGTAGGCCTTGTTTTGGTACTGACTCGAACTCGGAGTTCTCTGTT