Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041880_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:3:142133569:142197136:1 gene:Zm00001d041880 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase 9
Sequence

ATGTGGCCGAGTTTGATTGCAAAGTGCAAGGAGGGCGGCGTGGATGCAATTGAGACATAT
GTGTTTTGGAATGGGCATGAGCCGGCCAAAGGCCAGTATTACTTCGAAGGAAGATTTGAT
ATTGTCAGGTTTGCTAAGCTGGTTGCAGCTGAAGGTCTATTTCTTTTTCTGCGAATCGGC
CCATATGCTTGTGCTGAATGGAATTTCGGTGGTTTCCCAGTTTGGTTGCGCGATGTCCCT
GGGATAGAATTCCGCACTGACAATGAACCCTACAAGGCTGAAATGCAGATTTTTGTGACA
AAAATTGTAGATATCATGAAAGAGGAGAAGCTTTATTCTTGGCAAGGTGGTCCCATTATA
CTGCAGCAGATTGAAAATGAATACGGTAACATTCAAGGCCATTATGGTCAAGCAGGGAAG
AGATACATGCTATGGGCAGCTCAGATGGCACTTGCACTTGATACTGGTGTTCCTTGGGTA
ATGTGTAGGCAAACAGATGCTCCAGAACAAATTCTCAATACTTGCAATGCCTTTTACTGT
GATGGGTTCAAACCAAATTCCTACAACAAGCCAACAATATGGACTGAGGATTGGGATGGA
TGGTATGCCGACTGGGGCGAATCATTGCCACATAGGCCTGCTCAAGACAGTGCTTTTGCT
GTTGCTCGTTTTTATCAACGTGGTGGAAGCTTACAAAATTATTACATGTATTTTGGTGGA
ACCAATTTTGAGCGGACAGCTGGTGGTCCACTTCAGATAACTAGCTATGATTATGATGCA
CCAATTGACGAATACGGTATCTTAAGACAACCTAAGTGGGGGCATTTGAAAGACCTACAT
GCAGCTATTAAACTTTGTGAATCAGCTCTTACTGCAGTAGATGGTTCACCTCATTATGTA
AAATTAGGGCCCATGCAGGAGGCACATGTGTATTCCAGTGAAAATGTCCACACAAATGGA
AGCATTTCAGGAAATTCACAGTTTTGCTCAGCTTTTCTTGCCAACATTGATGAACATAAA
TATGCTTCAGTCTGGATTTTTGGAAAATCTTATAGTCTACCACCATGGTCTGTGAGCATA
CTACCAGACTGTGAAACTGTGGCTTTTAATACAGCCAGGGTTGGTACACAAACATCGTTT
TTCAATGTCGAATCTGGGTCCCCCAGCTATTCAAGTAGGCATAAACCTAGAATTCTATCC
CTTATTGGTGTCCCCTATCTCTCAACTACTTGGTGGACTTTTAAAGAACCTGTTGGCATT
TGGGGTGAAGGCATCTTTACTGCTCAGGGGATATTAGAGCACTTAAACGTGACAAAAGAC
ATCTCTGACTACCTTTCATATACTACCAGGGTGAACATTTCTGAAGAGGATGTTTTATAT
TGGAATTCCAAAGGTTTTCTTCCATCACTAACCATAGATCAAATCCGCGATGTAGCACGT
GTATTTGTAAATGGGAAGCTTGCAGGTAGTAAAGTTGGTCATTGGGTCTCACTGAATCAA
CCGCTTCAATTAGTTCAAGGACTTAATGAGTTGACATTGTTATCGGAGATTGTTGGCTTG
CAGAACTATGGTGCTTTCTTGGAGAAGGATGGTGCTGGATTTAGAGGTCAAGTAAAACTC
ACTGGCTTGTCGAATGGGGATATCGACCTTACTAATTCTCTTTGGACATATCAGATTGGT
TTGAAAGGTGAGTTTTCAAGGATCTATTCTCCTGAGTATCAAGGATCTGCTGAGTGGAGT
AGCATGCAGAATGATGACACAGTTTCACCCTTCACATGGTTCAAGACTATGTTTGATGCT
CCAGAAGGTAATGGCCCTGTTACCATTGATCTTGGGAGCATGGGAAAGGGCCAGGCTTGG
GTGAATGGGCATCTCATTGGGCGCTATTGGTCACTAGTTGCGCCAGAGTCCGGGTGTCCA
TCGTCATGCAACTACGCAGGAACATACAGTGATAGCAAGTGCCGATCGAACTGTGGAATC
GCTACACAAAGCTGGTACCACATACCACGCGAATGGTTGCAAGAGTCAGGCAATCTATTG
GTACTCTTCGAGGAAACAGGGGGAGACCCATCTCAGATATCGCTGGAGGTTCATTACACC
AAGACAATCTGCTCAAAAATATCTGAGACTTACTATCCTCCCCTTTCTGCCTGGTCACGT
GCCGCCAACGGTCGCCCCTCAGTAAATACGGTAGCACCAGAGCTTCGCTTGCAGTGCGAT
GACGGGCATGTGATCTCGAAGATTACATTTGCGAGTTACGGGACCCCTACAGGAGGTTGC
CAGAACTTCTCTGTAGGGAATTGCCATGCATCGACTACTCTAGACTTGGTGGTAGAGGCC
TGCGAAGGCAAGAACAGATGCGCGATCAGTGTTACCAACGAAGTATTCGGAGATCCATGC
CGCAAAGTCGTCAAGGATTTGGCAGTTGAAGCCGAGTGCTCCCCGCCATCGGTTAACCAA
GAACCTCGATACGATATATGA

Peptide Sequence

PEP ID

Zm00001d041880_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:3:142133569:142197136:1 gene:Zm00001d041880 transcript:Zm00001d041880_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase 9
Sequence

MWPSLIAKCKEGGVDAIETYVFWNGHEPAKGQYYFEGRFDIVRFAKLVAAEGLFLFLRIG
PYACAEWNFGGFPVWLRDVPGIEFRTDNEPYKAEMQIFVTKIVDIMKEEKLYSWQGGPII
LQQIENEYGNIQGHYGQAGKRYMLWAAQMALALDTGVPWVMCRQTDAPEQILNTCNAFYC
DGFKPNSYNKPTIWTEDWDGWYADWGESLPHRPAQDSAFAVARFYQRGGSLQNYYMYFGG
TNFERTAGGPLQITSYDYDAPIDEYGILRQPKWGHLKDLHAAIKLCESALTAVDGSPHYV
KLGPMQEAHVYSSENVHTNGSISGNSQFCSAFLANIDEHKYASVWIFGKSYSLPPWSVSI
LPDCETVAFNTARVGTQTSFFNVESGSPSYSSRHKPRILSLIGVPYLSTTWWTFKEPVGI
WGEGIFTAQGILEHLNVTKDISDYLSYTTRVNISEEDVLYWNSKGFLPSLTIDQIRDVAR
VFVNGKLAGSKVGHWVSLNQPLQLVQGLNELTLLSEIVGLQNYGAFLEKDGAGFRGQVKL
TGLSNGDIDLTNSLWTYQIGLKGEFSRIYSPEYQGSAEWSSMQNDDTVSPFTWFKTMFDA
PEGNGPVTIDLGSMGKGQAWVNGHLIGRYWSLVAPESGCPSSCNYAGTYSDSKCRSNCGI
ATQSWYHIPREWLQESGNLLVLFEETGGDPSQISLEVHYTKTICSKISETYYPPLSAWSR
AANGRPSVNTVAPELRLQCDDGHVISKITFASYGTPTGGCQNFSVGNCHASTTLDLVVEA
CEGKNRCAISVTNEVFGDPCRKVVKDLAVEAECSPPSVNQEPRYDI

Transcript Sequence

Transcript ID

Zm00001d041880_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:142133569:142197136:1 gene:Zm00001d041880 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-galactosidase 9
Sequence

AGATGTGGCCGAGTTTGATTGCAAAGTGCAAGGAGGGCGGCGTGGATGCAATTGAGACAT
ATGTGTTTTGGAATGGGCATGAGCCGGCCAAAGGCCAGTATTACTTCGAAGGAAGATTTG
ATATTGTCAGGTTTGCTAAGCTGGTTGCAGCTGAAGGTCTATTTCTTTTTCTGCGAATCG
GCCCATATGCTTGTGCTGAATGGAATTTCGGTGGTTTCCCAGTTTGGTTGCGCGATGTCC
CTGGGATAGAATTCCGCACTGACAATGAACCCTACAAGGCTGAAATGCAGATTTTTGTGA
CAAAAATTGTAGATATCATGAAAGAGGAGAAGCTTTATTCTTGGCAAGGTGGTCCCATTA
TACTGCAGCAGATTGAAAATGAATACGGTAACATTCAAGGCCATTATGGTCAAGCAGGGA
AGAGATACATGCTATGGGCAGCTCAGATGGCACTTGCACTTGATACTGGTGTTCCTTGGG
TAATGTGTAGGCAAACAGATGCTCCAGAACAAATTCTCAATACTTGCAATGCCTTTTACT
GTGATGGGTTCAAACCAAATTCCTACAACAAGCCAACAATATGGACTGAGGATTGGGATG
GATGGTATGCCGACTGGGGCGAATCATTGCCACATAGGCCTGCTCAAGACAGTGCTTTTG
CTGTTGCTCGTTTTTATCAACGTGGTGGAAGCTTACAAAATTATTACATGTATTTTGGTG
GAACCAATTTTGAGCGGACAGCTGGTGGTCCACTTCAGATAACTAGCTATGATTATGATG
CACCAATTGACGAATACGGTATCTTAAGACAACCTAAGTGGGGGCATTTGAAAGACCTAC
ATGCAGCTATTAAACTTTGTGAATCAGCTCTTACTGCAGTAGATGGTTCACCTCATTATG
TAAAATTAGGGCCCATGCAGGAGGCACATGTGTATTCCAGTGAAAATGTCCACACAAATG
GAAGCATTTCAGGAAATTCACAGTTTTGCTCAGCTTTTCTTGCCAACATTGATGAACATA
AATATGCTTCAGTCTGGATTTTTGGAAAATCTTATAGTCTACCACCATGGTCTGTGAGCA
TACTACCAGACTGTGAAACTGTGGCTTTTAATACAGCCAGGGTTGGTACACAAACATCGT
TTTTCAATGTCGAATCTGGGTCCCCCAGCTATTCAAGTAGGCATAAACCTAGAATTCTAT
CCCTTATTGGTGTCCCCTATCTCTCAACTACTTGGTGGACTTTTAAAGAACCTGTTGGCA
TTTGGGGTGAAGGCATCTTTACTGCTCAGGGGATATTAGAGCACTTAAACGTGACAAAAG
ACATCTCTGACTACCTTTCATATACTACCAGGGTGAACATTTCTGAAGAGGATGTTTTAT
ATTGGAATTCCAAAGGTTTTCTTCCATCACTAACCATAGATCAAATCCGCGATGTAGCAC
GTGTATTTGTAAATGGGAAGCTTGCAGGTAGTAAAGTTGGTCATTGGGTCTCACTGAATC
AACCGCTTCAATTAGTTCAAGGACTTAATGAGTTGACATTGTTATCGGAGATTGTTGGCT
TGCAGAACTATGGTGCTTTCTTGGAGAAGGATGGTGCTGGATTTAGAGGTCAAGTAAAAC
TCACTGGCTTGTCGAATGGGGATATCGACCTTACTAATTCTCTTTGGACATATCAGATTG
GTTTGAAAGGTGAGTTTTCAAGGATCTATTCTCCTGAGTATCAAGGATCTGCTGAGTGGA
GTAGCATGCAGAATGATGACACAGTTTCACCCTTCACATGGTTCAAGACTATGTTTGATG
CTCCAGAAGGTAATGGCCCTGTTACCATTGATCTTGGGAGCATGGGAAAGGGCCAGGCTT
GGGTGAATGGGCATCTCATTGGGCGCTATTGGTCACTAGTTGCGCCAGAGTCCGGGTGTC
CATCGTCATGCAACTACGCAGGAACATACAGTGATAGCAAGTGCCGATCGAACTGTGGAA
TCGCTACACAAAGCTGGTACCACATACCACGCGAATGGTTGCAAGAGTCAGGCAATCTAT
TGGTACTCTTCGAGGAAACAGGGGGAGACCCATCTCAGATATCGCTGGAGGTTCATTACA
CCAAGACAATCTGCTCAAAAATATCTGAGACTTACTATCCTCCCCTTTCTGCCTGGTCAC
GTGCCGCCAACGGTCGCCCCTCAGTAAATACGGTAGCACCAGAGCTTCGCTTGCAGTGCG
ATGACGGGCATGTGATCTCGAAGATTACATTTGCGAGTTACGGGACCCCTACAGGAGGTT
GCCAGAACTTCTCTGTAGGGAATTGCCATGCATCGACTACTCTAGACTTGGTGGTAGAGG
CCTGCGAAGGCAAGAACAGATGCGCGATCAGTGTTACCAACGAAGTATTCGGAGATCCAT
GCCGCAAAGTCGTCAAGGATTTGGCAGTTGAAGCCGAGTGCTCCCCGCCATCGGTTAACC
AAGAACCTCGATACGATATATGATCACGGTACTGTATTGTGGTGCTCAGGTCTTGGTGGA
CGTTGCCGCAGCTTTGCAGGGCCGTGCACAATGGTCCTGCATCGTTGTCTCCTATACCTC
TGCACCCATATTATATGTAAACAGTGACCTACATGTAAATCTAAAGAAGAGGAGGGATTG
AAAAGAAATGAGATGGAAAAGGAATAAAGTTGCTT