Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041842_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:140251579:140253329:1 gene:Zm00001d041842 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

ATGAGGAGGCAGAGCTCGCTAGCTCGCTCGTGCTCCTCAGTGGCACCGGCGTCGCCGCCG
CCTCAAAACGGAGGAGTGAACAGCAAGCACCTGGTCCCCCCCATGGAGGTGTCGGCGGAG
GCCGGGAACGCCGGTGCCGCCGAGTGGCTAGACGACGACGGCCGCCCCCGCCGCAAGGGC
ACGTTCTGGACGGCCAGCGCGCACATCATCACCGCCGTCATCGGCTCCGGCGTGCTGTCC
CTGGCCTGGGCCATCGCGCAGCTGGGCTGGGTCGCCGGCCCCACCGCCATGCTCCTCTTC
GCCTTCGTCACCTACTACACCGCCACGCTGCTCGCCGAGTGCTACCGCACCGGCGACCCC
GACACGGGCAAGCGCAACTACACGTACATGGACGCCGTGCGCTCCAACCTCGGCGGCGCC
AAGGTCGCCTTCTGCGGCGTCATCCAGTACGCCAACCTCGTCGGCGTCGCCATCGGGTAC
ACCATCGCGTCGTCCATCAGCATGAAGGCCATCAGGAGGGCGGGCTGCTTCCACACCCAC
GGCCACGGCGACCCCTGCAAGAGCTCCAGCACGCCATACATGATCCTCTTCGGCGCTGCG
CAGGTCGTCTTCTCCCAGATACCGGACTTCGATCAGATATGGTGGCTCTCCATTGTCGCT
GCAGTCATGTCCTTCACTTACTCGTCTATCGGACTGTCCCTCGGAATCGTACAGACCGTC
TCCAACGGTGGGTTCAAGGGCAGTCTCACCAGCATCGGCTTCGGCGCCGGCGTGAACTCC
ACGCAGAAGGTCTGGCACACGCTGCAGGCCTTCGGCGACATCGCGTTCGCCTACTCCTTC
TCCAACATCCTCATCGAGATCCAGGACACGATCAAGGCGCCGCCACCGTCGGAGTCGAAG
GTGATGCAGAAGGCGACGCGCCTCAGCGTGGCGACGACGACCGTGTTCTACATGCTGTGC
GGGTGCATGGGGTACGCGGCGTTCGGCGACGACGCGCCCGACAACCTGCTCACCGGCTTC
GGCTTCTACGAGCCCTTCTGGCTGCTGGACGTGGCCAACGTGGCCATCGTGGTGCACCTC
GTGGGCGCGTACCAGGTGTTCTGCCAGCCCATCTTCGCCTTCGTCGAGCGCCGCGCCGCC
GCGGCCTGGCCGGACAGCGCCTTCGTCTCGCGGGAGCTCCGCGCCGGCCCGTTCGCCCTC
AGCCCTTTCCGCCTCGCGTGGCGGTCGGCGTTCGTGTGCGTCACCACCGTCGTCGCCATG
CTGCTGCCTTTCTTCGGCGACGTGGCGGGGCTCCTCGGTGCCGTCTCCTTCTGGCCGCTC
ACCGTCTACTTCCCCGTCGAGATGTACATCAAGCAGCGCCGCGTGCCTCGTGGCAGCGCC
AGATGGATCAGCCTCCAGACGCTCAGCGTCACGTGCCTCCTCGTCTCCATCGCCGCCGCC
GCCGGTTCCATCGCCGACGTCGTCGACGCGCTCAAGGTGTACCGGCCGTTCAGCGGCTAA

Peptide Sequence

PEP ID

Zm00001d041842_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:140251579:140253329:1 gene:Zm00001d041842 transcript:Zm00001d041842_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

MRRQSSLARSCSSVAPASPPPQNGGVNSKHLVPPMEVSAEAGNAGAAEWLDDDGRPRRKG
TFWTASAHIITAVIGSGVLSLAWAIAQLGWVAGPTAMLLFAFVTYYTATLLAECYRTGDP
DTGKRNYTYMDAVRSNLGGAKVAFCGVIQYANLVGVAIGYTIASSISMKAIRRAGCFHTH
GHGDPCKSSSTPYMILFGAAQVVFSQIPDFDQIWWLSIVAAVMSFTYSSIGLSLGIVQTV
SNGGFKGSLTSIGFGAGVNSTQKVWHTLQAFGDIAFAYSFSNILIEIQDTIKAPPPSESK
VMQKATRLSVATTTVFYMLCGCMGYAAFGDDAPDNLLTGFGFYEPFWLLDVANVAIVVHL
VGAYQVFCQPIFAFVERRAAAAWPDSAFVSRELRAGPFALSPFRLAWRSAFVCVTTVVAM
LLPFFGDVAGLLGAVSFWPLTVYFPVEMYIKQRRVPRGSARWISLQTLSVTCLLVSIAAA
AGSIADVVDALKVYRPFSG

Transcript Sequence

Transcript ID

Zm00001d041842_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:140251579:140253329:1 gene:Zm00001d041842 gene_biotype:protein_coding transcript_biotype:protein_coding description:Amino acid permease 2
Sequence

CACTAGCAGCCTCCCTCCTCACTCGCAGAGCATTTGCCGGCTAGCCCGCCTAGCCGCGCT
CTCCACAACGATGAGGAGGCAGAGCTCGCTAGCTCGCTCGTGCTCCTCAGTGGCACCGGC
GTCGCCGCCGCCTCAAAACGGAGGAGTGAACAGCAAGCACCTGGTCCCCCCCATGGAGGT
GTCGGCGGAGGCCGGGAACGCCGGTGCCGCCGAGTGGCTAGACGACGACGGCCGCCCCCG
CCGCAAGGGCACGTTCTGGACGGCCAGCGCGCACATCATCACCGCCGTCATCGGCTCCGG
CGTGCTGTCCCTGGCCTGGGCCATCGCGCAGCTGGGCTGGGTCGCCGGCCCCACCGCCAT
GCTCCTCTTCGCCTTCGTCACCTACTACACCGCCACGCTGCTCGCCGAGTGCTACCGCAC
CGGCGACCCCGACACGGGCAAGCGCAACTACACGTACATGGACGCCGTGCGCTCCAACCT
CGGCGGCGCCAAGGTCGCCTTCTGCGGCGTCATCCAGTACGCCAACCTCGTCGGCGTCGC
CATCGGGTACACCATCGCGTCGTCCATCAGCATGAAGGCCATCAGGAGGGCGGGCTGCTT
CCACACCCACGGCCACGGCGACCCCTGCAAGAGCTCCAGCACGCCATACATGATCCTCTT
CGGCGCTGCGCAGGTCGTCTTCTCCCAGATACCGGACTTCGATCAGATATGGTGGCTCTC
CATTGTCGCTGCAGTCATGTCCTTCACTTACTCGTCTATCGGACTGTCCCTCGGAATCGT
ACAGACCGTCTCCAACGGTGGGTTCAAGGGCAGTCTCACCAGCATCGGCTTCGGCGCCGG
CGTGAACTCCACGCAGAAGGTCTGGCACACGCTGCAGGCCTTCGGCGACATCGCGTTCGC
CTACTCCTTCTCCAACATCCTCATCGAGATCCAGGACACGATCAAGGCGCCGCCACCGTC
GGAGTCGAAGGTGATGCAGAAGGCGACGCGCCTCAGCGTGGCGACGACGACCGTGTTCTA
CATGCTGTGCGGGTGCATGGGGTACGCGGCGTTCGGCGACGACGCGCCCGACAACCTGCT
CACCGGCTTCGGCTTCTACGAGCCCTTCTGGCTGCTGGACGTGGCCAACGTGGCCATCGT
GGTGCACCTCGTGGGCGCGTACCAGGTGTTCTGCCAGCCCATCTTCGCCTTCGTCGAGCG
CCGCGCCGCCGCGGCCTGGCCGGACAGCGCCTTCGTCTCGCGGGAGCTCCGCGCCGGCCC
GTTCGCCCTCAGCCCTTTCCGCCTCGCGTGGCGGTCGGCGTTCGTGTGCGTCACCACCGT
CGTCGCCATGCTGCTGCCTTTCTTCGGCGACGTGGCGGGGCTCCTCGGTGCCGTCTCCTT
CTGGCCGCTCACCGTCTACTTCCCCGTCGAGATGTACATCAAGCAGCGCCGCGTGCCTCG
TGGCAGCGCCAGATGGATCAGCCTCCAGACGCTCAGCGTCACGTGCCTCCTCGTCTCCAT
CGCCGCCGCCGCCGGTTCCATCGCCGACGTCGTCGACGCGCTCAAGGTGTACCGGCCGTT
CAGCGGCTAACTT