Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041777_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:137266061:137269605:1 gene:Zm00001d041777 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

ATGGCTCCACTTCTTCTTGCTTCTCGCACAGCCTGTCGTCCTGGCCTTACAAGCCGCCAT
GCCCATGATAATGGCCGGCACGGCCTGTCTTCTTCACCACCAGGAAGTCGTAGTAAGCGA
AGCCGTAGCCTTAGCTTGAGGCCACGAGCTGAAAAGACGACGACAGGCGGTGGGGGTCAT
GTTGTGAGCGAAAAGCTGAGCCCCTGGCAAATCCCCAGGAGGGAGTGGTTCCCCCCTAGC
TTTATCTTTGGTGCTGCCACTTCAGCATACCAAATTGAAGGGGCTTGGAACGAAGGTGGA
AAGGGGCCAAGCACTTGGGACGACTTCTGCCACAACCATCCGGAGTGGATAGCGGACGGG
AGCAGTGGGGATGTTGGAGCAAACTCCTACTATCTGTATAGGGAGGACGTCAGATTGCTG
AAGGAAATGGGTATGGACGCCTACAGGTTCTCCATCTCTTGGCCCAGAATATTGCCAAAG
GGGACACTCGAGGGAGGCATTAACCATAAAGGCATCGAGTACTACAAAAAGCTGATCAAC
TTGTTGAAAGAGAACGGCATAGAACCATATGTGACACTTTTCCACTGGGACACACCTCAA
GCGCTGGTGGACAGCTACGGTGGCTTCTTAGATGATAGGATTGTAAAAGACTACACAGAC
TTCGCCAAGGTGTGCTTTGTGCACTTCGGCGACGTCGTGAAGAACTGGTTTACCTTCAAC
GAGCCACAGACATTCTCCTCTTTTTCCTACGGAACCGGGATCTGTGCCCCAGGGCGGTGC
TCCCCGGGACAGAAATGTGCTAACCCAGTTGGGAACTCGCTCACCGAGCCGTACATTGTT
GGCCACAACCTCCTCCGAGCTCATGCTGAGACTGTCCATCAGTACAACAAGTACTACAGA
GGTAACAAGGAAGGCCACATAGGGATGGCGTTTGACGTGATGGGTCGTGTGCCATATGAA
AAGATGTTCCTCGACGACCAGGCCCAGGAAAGGTCCATCGACTACAACCTAGGGTGGTTC
GTGGAGCCGGTGGTCCGTGGTGACTACCCCTTCTCCATGAGATCGTTGGTCAAGGATCGG
TTGCCCTACTTCACCGACGAAGAGAAAGAGAAGCTAGTGGGGTCGTATGACATAATGGGG
ATAAACTACTACACCTCGAGGTTCTCCAAGCACGTCGATATCTCGACAGGCTACACGCCG
GTACTCAACACCGACGACGCATATGCCACCCAGGAAACGAAAGGACCTGACGGGAATACT
ATTGGTCCATCTATGGGGAATTCGTGGATCTACATGTACCCTAACGGCCTGAAGGACATC
CTTATGGTCATGAAGAACAAATACGGGAACCCACCTATCTACATCACTGAGAATGGAATC
GGGGATATTGACAGCAAGGAGAAACCTCTACCCGTAAAAGATGCGTTGAATGACCACGCA
AGGCTAGATTACCTCCAGCGCCACATCTCAGTGCTCAAAGACGCAATAGACCTGGGAGCG
GACGTGCGTGGCCACTTCACCTGGTCTCTGCTGGACAACTTCGAGTGGTGCGGCGGTTAC
ACGGAGCGTTACGGCATCGTCTACGTGGACCGTAGCAACGGCTGCAAGCGCCGCATGAAG
CGCTCGGCCAAATGGTTGAAGAAATTCAACCGAGCCGCGCATTCCAAGAAGAAAGACAAG
ACGGGCATTATTCCGCCGCCGTCGGCTTATTAA

Peptide Sequence

PEP ID

Zm00001d041777_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:137266061:137269605:1 gene:Zm00001d041777 transcript:Zm00001d041777_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

MAPLLLASRTACRPGLTSRHAHDNGRHGLSSSPPGSRSKRSRSLSLRPRAEKTTTGGGGH
VVSEKLSPWQIPRREWFPPSFIFGAATSAYQIEGAWNEGGKGPSTWDDFCHNHPEWIADG
SSGDVGANSYYLYREDVRLLKEMGMDAYRFSISWPRILPKGTLEGGINHKGIEYYKKLIN
LLKENGIEPYVTLFHWDTPQALVDSYGGFLDDRIVKDYTDFAKVCFVHFGDVVKNWFTFN
EPQTFSSFSYGTGICAPGRCSPGQKCANPVGNSLTEPYIVGHNLLRAHAETVHQYNKYYR
GNKEGHIGMAFDVMGRVPYEKMFLDDQAQERSIDYNLGWFVEPVVRGDYPFSMRSLVKDR
LPYFTDEEKEKLVGSYDIMGINYYTSRFSKHVDISTGYTPVLNTDDAYATQETKGPDGNT
IGPSMGNSWIYMYPNGLKDILMVMKNKYGNPPIYITENGIGDIDSKEKPLPVKDALNDHA
RLDYLQRHISVLKDAIDLGADVRGHFTWSLLDNFEWCGGYTERYGIVYVDRSNGCKRRMK
RSAKWLKKFNRAAHSKKKDKTGIIPPPSAY

Transcript Sequence

Transcript ID

Zm00001d041777_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:137266061:137269605:1 gene:Zm00001d041777 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

GCAAGACTCAATACACAAGCAGAGCTCAAACAATTCTTGCTTCCCGCTAGCTAGCTCGCA
AGAAATAATGGCTCCACTTCTTCTTGCTTCTCGCACAGCCTGTCGTCCTGGCCTTACAAG
CCGCCATGCCCATGATAATGGCCGGCACGGCCTGTCTTCTTCACCACCAGGAAGTCGTAG
TAAGCGAAGCCGTAGCCTTAGCTTGAGGCCACGAGCTGAAAAGACGACGACAGGCGGTGG
GGGTCATGTTGTGAGCGAAAAGCTGAGCCCCTGGCAAATCCCCAGGAGGGAGTGGTTCCC
CCCTAGCTTTATCTTTGGTGCTGCCACTTCAGCATACCAAATTGAAGGGGCTTGGAACGA
AGGTGGAAAGGGGCCAAGCACTTGGGACGACTTCTGCCACAACCATCCGGAGTGGATAGC
GGACGGGAGCAGTGGGGATGTTGGAGCAAACTCCTACTATCTGTATAGGGAGGACGTCAG
ATTGCTGAAGGAAATGGGTATGGACGCCTACAGGTTCTCCATCTCTTGGCCCAGAATATT
GCCAAAGGGGACACTCGAGGGAGGCATTAACCATAAAGGCATCGAGTACTACAAAAAGCT
GATCAACTTGTTGAAAGAGAACGGCATAGAACCATATGTGACACTTTTCCACTGGGACAC
ACCTCAAGCGCTGGTGGACAGCTACGGTGGCTTCTTAGATGATAGGATTGTAAAAGACTA
CACAGACTTCGCCAAGGTGTGCTTTGTGCACTTCGGCGACGTCGTGAAGAACTGGTTTAC
CTTCAACGAGCCACAGACATTCTCCTCTTTTTCCTACGGAACCGGGATCTGTGCCCCAGG
GCGGTGCTCCCCGGGACAGAAATGTGCTAACCCAGTTGGGAACTCGCTCACCGAGCCGTA
CATTGTTGGCCACAACCTCCTCCGAGCTCATGCTGAGACTGTCCATCAGTACAACAAGTA
CTACAGAGGTAACAAGGAAGGCCACATAGGGATGGCGTTTGACGTGATGGGTCGTGTGCC
ATATGAAAAGATGTTCCTCGACGACCAGGCCCAGGAAAGGTCCATCGACTACAACCTAGG
GTGGTTCGTGGAGCCGGTGGTCCGTGGTGACTACCCCTTCTCCATGAGATCGTTGGTCAA
GGATCGGTTGCCCTACTTCACCGACGAAGAGAAAGAGAAGCTAGTGGGGTCGTATGACAT
AATGGGGATAAACTACTACACCTCGAGGTTCTCCAAGCACGTCGATATCTCGACAGGCTA
CACGCCGGTACTCAACACCGACGACGCATATGCCACCCAGGAAACGAAAGGACCTGACGG
GAATACTATTGGTCCATCTATGGGGAATTCGTGGATCTACATGTACCCTAACGGCCTGAA
GGACATCCTTATGGTCATGAAGAACAAATACGGGAACCCACCTATCTACATCACTGAGAA
TGGAATCGGGGATATTGACAGCAAGGAGAAACCTCTACCCGTAAAAGATGCGTTGAATGA
CCACGCAAGGCTAGATTACCTCCAGCGCCACATCTCAGTGCTCAAAGACGCAATAGACCT
GGGAGCGGACGTGCGTGGCCACTTCACCTGGTCTCTGCTGGACAACTTCGAGTGGTGCGG
CGGTTACACGGAGCGTTACGGCATCGTCTACGTGGACCGTAGCAACGGCTGCAAGCGCCG
CATGAAGCGCTCGGCCAAATGGTTGAAGAAATTCAACCGAGCCGCGCATTCCAAGAAGAA
AGACAAGACGGGCATTATTCCGCCGCCGTCGGCTTATTAATTAATTACAACAGTGCGCTG
GCATATGTTTTTAGATATATATAATATATATAATATACATGTGTGGTCTGTGGTACGTAC
GGTGTACGTATGTTGCTTGTAAAATAAACCCACCTGTGTTGTGGGAACGTACTAAAGTGA
AATACTCAACGGATCGGAGGCCTTTGGCTGTTTCCTAT