Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041700_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:3:133868250:133872480:-1 gene:Zm00001d041700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic
Sequence

ATGCGTGTACCGCCCGGCAGCCACGCGTACACTTCTGCCGCAGAGCTAAACGCGCCACTC
CGCGGCAAGCTGATCTGCTGCTCCCAAGTCCCACCAGCCACCGCACCGAGTGCCAATGGC
GACTGCAGCGACTTCTACGCCGGCGGCGTGGCAGTCTACTCTGGTCTACTCTGGTCTACG
CCATGCAGGGACCTGCCCGTGCTTCTCGCCCAGCCCCGCTCGCTCCCCGTCATCGTCACC
TACAGGCCGAATTGGGAGGGAGGCCAGTACGCAGGCGAAGATGAGCCACGGTTTGAGGCG
CTTCTACTGGCAATGGAGCTGGGAGCTGAATATGTCGATGTCGAGTTCAAGGTCGCCGAC
AAATTTATGAAGTATTTGTCTGGGAAGAAACCTCAAAACTGTAAGCTCATCATTTCAGCA
TACGACTACAAGACCACTCCATCGGTACATGAACTTCTGAATTTAGTAGCTCAGATACGA
GCAACGGGGGCTGACATTGTGAAAATTGAAACCACTGCTGCTGACATTGTAGACACATCA
AGAATGTTTCAAGTACTTGCACATTGCCATGAAAAGCAGGTGCCTATCATTGGGCTGGTG
AGGAAAGAACATGGTTTTATTTCTCGTATTATTTGCGCAAAATATGGCGGATACCTTACT
TTTGCATCTCTTGAAAATGGAAAAGAATCTACCACTGAGCAGCCGACAGTAGCAGACTTG
ATAAATAAGTACAAAATACGGCAGATAGGCCCAGATACTAAGGTCTTTGGTATTATTGGA
AATCCAGTTAGCCACAGTAAAAGCCCAATTGTGCAAAATCAAGCTTTCAGATCAGTGGGT
TTCGATGCTGTGTTTTTGCCATTTTTGTCAGATGACTTGGTTCAGTTTCTTTATACCTTC
TCAGCACCAGATTATGCCGGCTTCAGTTGCACAATGCCCCATAAAGAAACTGCACTTAGG
TGCTGTGACGATGTCGACCCTATCGCCAGGGACATCGGAGCTATTAATACAATCATTAGA
AGACCTGATGGAAAACTTGTAGGCTACAATACAGATTATTCTGGTGCTATTTCTGCTATT
GAGGATGGAATAAGAGGTTGTCACGTGCCACCCTTTGCAATATTGTGTTTTGCTGATCTA
TATATGGTTCATATAACTGCCTTTTAG

Peptide Sequence

PEP ID

Zm00001d041700_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:3:133868250:133872480:-1 gene:Zm00001d041700 transcript:Zm00001d041700_T007 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic
Sequence

MRVPPGSHAYTSAAELNAPLRGKLICCSQVPPATAPSANGDCSDFYAGGVAVYSGLLWST
PCRDLPVLLAQPRSLPVIVTYRPNWEGGQYAGEDEPRFEALLLAMELGAEYVDVEFKVAD
KFMKYLSGKKPQNCKLIISAYDYKTTPSVHELLNLVAQIRATGADIVKIETTAADIVDTS
RMFQVLAHCHEKQVPIIGLVRKEHGFISRIICAKYGGYLTFASLENGKESTTEQPTVADL
INKYKIRQIGPDTKVFGIIGNPVSHSKSPIVQNQAFRSVGFDAVFLPFLSDDLVQFLYTF
SAPDYAGFSCTMPHKETALRCCDDVDPIARDIGAINTIIRRPDGKLVGYNTDYSGAISAI
EDGIRGCHVPPFAILCFADLYMVHITAF

Transcript Sequence

Transcript ID

Zm00001d041700_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:133868250:133872480:-1 gene:Zm00001d041700 gene_biotype:protein_coding transcript_biotype:protein_coding description:Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic
Sequence

ACCTCCAGAGCCAAAAGAGCCGGCGGTGGCCGGCAGCCAAAACCCACGTCGGATTTCGCC
GCCGCCGCCAGGAGCTAGGGGACAAGGCAACGCCGGCAGGTGCAACATTTATGCGTGTAC
CGCCCGGCAGCCACGCGTACACTTCTGCCGCAGAGCTAAACGCGCCACTCCGCGGCAAGC
TGATCTGCTGCTCCCAAGTCCCACCAGCCACCGCACCGAGTGCCAATGGCGACTGCAGCG
ACTTCTACGCCGGCGGCGTGGCAGTCTACTCTGGTCTACTCTGGTCTACGCCATGCAGGG
ACCTGCCCGTGCTTCTCGCCCAGCCCCGCTCGCTCCCCGTCATCGTCACCTACAGGCCGA
ATTGGGAGGGAGGCCAGTACGCAGGCGAAGATGAGCCACGGTTTGAGGCGCTTCTACTGG
CAATGGAGCTGGGAGCTGAATATGTCGATGTCGAGTTCAAGGTCGCCGACAAATTTATGA
AGTATTTGTCTGGGAAGAAACCTCAAAACTGTAAGCTCATCATTTCAGCATACGACTACA
AGACCACTCCATCGGTACATGAACTTCTGAATTTAGTAGCTCAGATACGAGCAACGGGGG
CTGACATTGTGAAAATTGAAACCACTGCTGCTGACATTGTAGACACATCAAGAATGTTTC
AAGTACTTGCACATTGCCATGAAAAGCAGGTGCCTATCATTGGGCTGGTGAGGAAAGAAC
ATGGTTTTATTTCTCGTATTATTTGCGCAAAATATGGCGGATACCTTACTTTTGCATCTC
TTGAAAATGGAAAAGAATCTACCACTGAGCAGCCGACAGTAGCAGACTTGATAAATAAGT
ACAAAATACGGCAGATAGGCCCAGATACTAAGGTCTTTGGTATTATTGGAAATCCAGTTA
GCCACAGTAAAAGCCCAATTGTGCAAAATCAAGCTTTCAGATCAGTGGGTTTCGATGCTG
TGTTTTTGCCATTTTTGTCAGATGACTTGGTTCAGTTTCTTTATACCTTCTCAGCACCAG
ATTATGCCGGCTTCAGTTGCACAATGCCCCATAAAGAAACTGCACTTAGGTGCTGTGACG
ATGTCGACCCTATCGCCAGGGACATCGGAGCTATTAATACAATCATTAGAAGACCTGATG
GAAAACTTGTAGGCTACAATACAGATTATTCTGGTGCTATTTCTGCTATTGAGGATGGAA
TAAGAGGTTGTCACGTGCCACCCTTTGCAATATTGTGTTTTGCTGATCTATATATGGTTC
ATATAACTGCCTTTTAGCCCCATGTGCAGCATCACAACCAACAGATTCGATCACTTCACC
ACTGGCTGGAAGACTTTTTGTTGTTATTGGGGCTGGTGGTGCAGGAAAAGCACTAGCATA
TGGTGCAAAAGAGAAGGGAGCAAGAGTTGTGATTGCAAACCGTACATTTGCACGAGCTCA
AGAACTCGCCCACATCATTGGCGGGACTGCTTTGACCCTGTCAGAGTTGGAAAGCTACCA
TCCGGAGAAAGGGATGATTCTTGCAAACGCGACATCTGTGGGGATGCATCCAAACGTCGA
TGAAACCCCTTTATCTAAGCACGCGCTAAAATCCTATGCCGTTGTCTTCGACGCGGTCTT
CGTGCCGAGAGAGACCAGACTTCTCCGAGAAGCTGCAGTGTGTGGAGCCACAGTCATCGA
CGGTTTGGAGATGCTAATCAGGCTAGTGATGGTTCAGTTTAAGCTTTTCACGGGGGGCAT
GACAGCTCCAGAAAGGTTGATGCGTGAGGCTATCCTGACGAAGACACATTGAGGGTTTGT
TCAAATAACAAGATCTCTACACTACAGATGTCCCTGCAAAAAAAAAGGTCCCAGTTGTAC
ATGTCCTCCTTCTTGCTTCTTCCTCGGCGTCTGGGAAGCACCGTATCTCATTTTCAACCC
AAGCAAGGAGAGGAGGTGCAGGTTCGGGCCTCGTCCTGCTTCTCCTGCTGCCTGCCATGA
TGCAGTGTCGTTTGTTGTTCAGTAGACGGTATGCTCTAGTTCAACAGAGTAAAGATGTTT
TGTTTTCTCAGGTTGCAAAACAACGAATGGTCATGTTCAATAAGGAATGGAATGTGATTT
GG