Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041649_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:3:131635311:131638801:-1 gene:Zm00001d041649 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCCCGTCTTCCTTTATCTACACGAACGCGGAAGAGAAATTTGACATTTAGAAATGTG
ACATCTGCCATTATGCTTATGTACTATTATATCTTGGCTTTATTAGTACTATCACATAAG
TGGAAGTGTTGGAAGATAGAAAGGAGGATAAAGGTTAAAGAACTTAGAAGTCAACGTATG
TACCATCTAATCTGTGAGAGCGATGTTAAGTGTATAAATGACCTTCGCATGGATAGGAGA
ACATTTCATATATTGTGTGATATGCTTAGAGATGTTGGTGGTTTGAGGGGTACAAGAAAT
ACACCATTGGAAGAGATAGTAGCGGCATTCTTACACACACTGGCTCATCATGTGAAAAAT
AGAACAATAGAGGGTTTCTTCTTAAGGAGTGGTGAGACAGTGAGCAGAAACTTCAATGCA
TGCCTCCTAGCAGTATTGAAGCTTCACCAATTGCTCCTTAAGAAACCAGAACCTATACCT
GAGGGCTGCACAGACTTTAGATGGAATCACTTCAAGAGTTGTTTGGGTGCATTGGATGGC
ACACATGTAAAGGTGACTGTCCCAACTAAGTTGAAGGGGAGATATAGGTCAAGAAAAGGA
GAAATTGTGACAAATGTGTTGGGTGTTTGTGCACCTGACATGCAGTTTATATATGTCTTA
CCTGGTTGGGAGGGTTCTGCACATGACGGGCGTGTGCTTCGAGATGCCATCTCGAGGCCG
AATGGATTACGTGTCCCTCAAGGTTGCTATTATCTTGTTGATGCTGGTTACACAAATGCA
AATGGTTTCTTAGCACCATATCGAGGACAGAGGTATCATCTAGGAGGTTTCACTACTCAA
AACCCACCACATAGTGCTGAGGAGTACTTCAACTTGTGCCATGCTAGAGCTAGGAATATT
GTTGAGAGGGCATTTGGAAGGCTCAAGGGTCGGTGGGCAATTTTAAGAGACCCATTTGAA
AATGATGAGGAGCCAGCTATGGATGCATCATTTGAAGTTATGGATGGAGAAATCAGTGAA
CCAGAATTTATCACAGGTGTCTCAACATCTAATGAATGGACTGATTTCCGCAATAATCTT
GCTCAGGGGATGTATAATAGATATAGAGCTAGGTCTAATAACTAA

Peptide Sequence

PEP ID

Zm00001d041649_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:3:131635311:131638801:-1 gene:Zm00001d041649 transcript:Zm00001d041649_T006 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MARLPLSTRTRKRNLTFRNVTSAIMLMYYYILALLVLSHKWKCWKIERRIKVKELRSQRM
YHLICESDVKCINDLRMDRRTFHILCDMLRDVGGLRGTRNTPLEEIVAAFLHTLAHHVKN
RTIEGFFLRSGETVSRNFNACLLAVLKLHQLLLKKPEPIPEGCTDFRWNHFKSCLGALDG
THVKVTVPTKLKGRYRSRKGEIVTNVLGVCAPDMQFIYVLPGWEGSAHDGRVLRDAISRP
NGLRVPQGCYYLVDAGYTNANGFLAPYRGQRYHLGGFTTQNPPHSAEEYFNLCHARARNI
VERAFGRLKGRWAILRDPFENDEEPAMDASFEVMDGEISEPEFITGVSTSNEWTDFRNNL
AQGMYNRYRARSNN

Transcript Sequence

Transcript ID

Zm00001d041649_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:131635311:131638801:-1 gene:Zm00001d041649 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

AATCAATACCACTCGGTCCGCGACGCTTTCCTCTCCCTTCGCGATGCCGACGATTTCCTC
GCGTTGCCTCCCTTCGCGCCGCCGCCTCCCTCGCGTCGGCCGTCGCCTCCCCCCACATCG
GCCGTCACCCCTCACCGGTGAGTATCGTCCTCTCCCTCCCTCCCTCTCTAGCTGTTTCCT
TTCTCTGACGATGCGGATCCCCGTCGGATGGTGTGGATCTAGGCGACCAACCTACCCTCG
ACCTCCTCTGCTGATGCGGATCCCCAGCGGGTGCTGACCGTGACGGGACCTCCCCGTGAC
CGTGCTCTGCTGCGTGGTGCGCGCCCCGCTCCGCGTTCGGCTGCCCGGCGGCGGCTCGCA
CCAAAACAGTTCATGTTTTGATGCATCCATACGAGCGCTTCCCAGTCGATTCAATGCATC
CATGTTCGCGTTCGGTTCGGCGGCCAAAACAGTCGCCGTGTGCTCCGTCAGGCATCAGCA
TCAGGCTTCCCAATCGAAAAATGTGCATCAGCATCAGGCTTGTCCGTTAGTTAAGTTCAA
AGAGGCATTCCATACCAGCGCGCAACATCATTCAGATATCCCACCACTACTCCTTGTTTC
TAGTATAAATAAATGTGCATCCAAGTCACTCATGAGGAGCAACAAGCTGGAGTAGCTAGC
AACTCGAGGGATGAAGACTAGTTGATAGGCTAGCTTTCTCCTTCTGTGCCACTCATAAAA
CAACAGCTAGGTAGCACCTTTTTGTTGCCAAGCAATGCAAGATCTATCTGCTGAGATCAA
TCTGAATACCTAAAATATCTATCTGGCCGGTCATCAGCTCGATCTTAAGCAGGTGATCTT
CATTTCACATGCATGCTTGTTCCTTACCAAAACTTGTTTCTTCCAATTCTTTCTCATATA
TCCTGCGCTTAGTGATGGTTACTAATCAGGGATGCTCTTTATTGAGCAACTAGTCTAGTC
TAGTCTAGGGATGCAAATTTGCCCTCTATATTTTCTTGTCTTGTTTATATATTGTGCTCA
AAGAAATCTGATTTTTCTATACTAACCTTGAACAACACTATGGCCCGTCTTCCTTTATCT
ACACGAACGCGGAAGAGAAATTTGACATTTAGAAATGTGACATCTGCCATTATGCTTATG
TACTATTATATCTTGGCTTTATTAGTACTATCACATAAGTGGAAGTGTTGGAAGATAGAA
AGGAGGATAAAGGTTAAAGAACTTAGAAGTCAACGTATGTACCATCTAATCTGTGAGAGC
GATGTTAAGTGTATAAATGACCTTCGCATGGATAGGAGAACATTTCATATATTGTGTGAT
ATGCTTAGAGATGTTGGTGGTTTGAGGGGTACAAGAAATACACCATTGGAAGAGATAGTA
GCGGCATTCTTACACACACTGGCTCATCATGTGAAAAATAGAACAATAGAGGGTTTCTTC
TTAAGGAGTGGTGAGACAGTGAGCAGAAACTTCAATGCATGCCTCCTAGCAGTATTGAAG
CTTCACCAATTGCTCCTTAAGAAACCAGAACCTATACCTGAGGGCTGCACAGACTTTAGA
TGGAATCACTTCAAGAGTTGTTTGGGTGCATTGGATGGCACACATGTAAAGGTGACTGTC
CCAACTAAGTTGAAGGGGAGATATAGGTCAAGAAAAGGAGAAATTGTGACAAATGTGTTG
GGTGTTTGTGCACCTGACATGCAGTTTATATATGTCTTACCTGGTTGGGAGGGTTCTGCA
CATGACGGGCGTGTGCTTCGAGATGCCATCTCGAGGCCGAATGGATTACGTGTCCCTCAA
GGTTGCTATTATCTTGTTGATGCTGGTTACACAAATGCAAATGGTTTCTTAGCACCATAT
CGAGGACAGAGGTATCATCTAGGAGGTTTCACTACTCAAAACCCACCACATAGTGCTGAG
GAGTACTTCAACTTGTGCCATGCTAGAGCTAGGAATATTGTTGAGAGGGCATTTGGAAGG
CTCAAGGGTCGGTGGGCAATTTTAAGAGACCCATTTGAAAATGATGAGGAGCCAGCTATG
GATGCATCATTTGAAGTTATGGATGGAGAAATCAGTGAACCAGAATTTATCACAGGTGTC
TCAACATCTAATGAATGGACTGATTTCCGCAATAATCTTGCTCAGGGGATGTATAATAGA
TATAGAGCTAGGTCTAATAACTAAGGACATGAACCAATTAGAGAGCTCAAGTGTTACTCG
GGGAAGAGGGAAAAACAAAAGGATCTGGACTTATTATGAGGATGAGGAGTTAATTAAAGC
ACTATATGAGATATCTTTAGATCCAAAGTGGAAAAGTGAGGGAGGTTTTAAGAATGGGTA
TTGTTCTGTTCTAGAAAATGAACTCAAAGCAAGGCTACCAGGGTGTGGTCTCAGTGCTAT
TCCACACATTGAGTCTAGAGTGAGGCATTTTAGGACCAAGTATGGTTCTATTGAGGTCAT
GCTTGCTAAGAGTGGTTTTAATCAGATGACGATGCTTTTCGCGCTTCCTGAGACTCTTAG
GAGAGAATTCATCCTGAACATGATTGCAGATGAAGCTCAAAGGAAGTGACTTGTCAAATT
ATCAATGAAGAATGTCAGGAGCATTTGGTGAAGAGTGATCGGCATATCAACTTCTGGAAG
TTGAATTTTGAAGACGTTTGAAGTCCTAAGACATTTCTAGAACATGAAAATTATGAATTC
CTAAGGCTAGCTTTTTTTGACTGACTGTGTTGTTGACTTTGTGTGAAAATAACCCGTTGT
TTGAAACCTATTATATTTGCTAGCTTTATTTGCTATTCAGCAAGACATATAAAGTTGCTA
GCTTTATTGGTTGTCTGTGTTTTCAACTGTTTGTGAAAATAACCAGTATAAAGTTGTTGT
TTAGAACATGTTATTTGTGCTAGCGCAAAGCTGAAAATAAAATCAGTATTTTTGTGCGC