Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041612_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:129682628:129687971:1 gene:Zm00001d041612 gene_biotype:protein_coding transcript_biotype:protein_coding description:Late embryogenesis abundant protein (LEA) family protein
Sequence

ATGGGGTGGGCGACGCGGTTCCTGGCGGCGGTGTGCTTCTTTGCTGCGGGCGTCCTCTTC
GTCCCAGAGGCTATCGGTTCCCCATCCGGCGCAGGAGCCGTCACCGCCGCCAAGCTGGCC
CACGTCCTCTCCTTTGCCACCTCCTGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGC
ATCATAATGTTCAAGAACCTGCCGAGGCACATGTTCGGCAACTTGCAGAGCAAGATGTTC
CCGGCCTACTTCACGCTTATATCTGCATGCGCAGCCATCTCCGTCGCCGCCTTCGCGTAC
CTTCACCCGTGGAAGACGGCGTCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCA
GCGCTCGGCTGCAACCTCTCCAACCTTCTAGTCTTCACTCCCATGACCATCGAGGTGAAC
GTATCCCGCTTCTTAGGCATTGGCCTCTTTCCATAA

Peptide Sequence

PEP ID

Zm00001d041612_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:129682628:129687971:1 gene:Zm00001d041612 transcript:Zm00001d041612_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Late embryogenesis abundant protein (LEA) family protein
Sequence

MGWATRFLAAVCFFAAGVLFVPEAIGSPSGAGAVTAAKLAHVLSFATSWGAALWATFIGG
IIMFKNLPRHMFGNLQSKMFPAYFTLISACAAISVAAFAYLHPWKTASTVQRYQLGFLLS
ALGCNLSNLLVFTPMTIEVNVSRFLGIGLFP

Transcript Sequence

Transcript ID

Zm00001d041612_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:129682628:129687971:1 gene:Zm00001d041612 gene_biotype:protein_coding transcript_biotype:protein_coding description:Late embryogenesis abundant protein (LEA) family protein
Sequence

GCTGGAATCAAACAAACACAGCTCTGACCTCTGACCGTAATTACCAACCACTGCCAGCGA
CCTCTCCTCGGAGGCGTGACCGTAATTGCTCCGCAACTACCCCGATACCATTCCCAAATC
CTCCGTCGACCCCTCTACACCGGCGATCGGCGGCGAACGATGGGGTGGGCGACGCGGTTC
CTGGCGGCGGTGTGCTTCTTTGCTGCGGGCGTCCTCTTCGTCCCAGAGGCTATCGGTTCC
CCATCCGGCGCAGGAGCCGTCACCGCCGCCAAGCTGGCCCACGTCCTCTCCTTTGCCACC
TCCTGGGGCGCCGCCCTCTGGGCCACCTTCATCGGCGGCATCATAATGTTCAAGAACCTG
CCGAGGCACATGTTCGGCAACTTGCAGAGCAAGATGTTCCCGGCCTACTTCACGCTTATA
TCTGCATGCGCAGCCATCTCCGTCGCCGCCTTCGCGTACCTTCACCCGTGGAAGACGGCG
TCCACTGTGCAGCGCTACCAGCTTGGATTCCTCCTCTCAGCGCTCGGCTGCAACCTCTCC
AACCTTCTAGTCTTCACTCCCATGACCATCGAGGTGAACGTATCCCGCTTCTTAGGCATT
GGCCTCTTTCCATAATTCCATCGAGATTAAGAATTATATGAGAACCTTAGGATTTGTCAT
GTAGTAGTGGTTCATGGTTTGTAAATTTCACATGACCGTAGAAGTGGGCCTAATTGGTTG
CCGTATCTGAGCAGCCTGGCCGTGCGAGCCAGGCCGGTGGGGCCTGGCTGTGCATCACGC
GAGCCTGGTTCTCCAAATGCGGAGATTTTGGCCGCCTCTCCACAGCCTGGCCCGAGGTGT
TTTTTTTGCATCGCTAGACACAAGCTCAGCTGCATATGCGACAAACCAAACAAACGATAA
AGTAACACGAGCCTGGCTGCATGGATACGACCTACAACCAAACGCACTGCGGCTGCACAC
CGTGAGCCTGGTTGGCCTATACGCAGGCTACAAATAGGGATTATTAGCAGTAACTGTACA
AAGTTGAGTAATGCTTTAGAGATTGAAACTGATTTGTGCTGTGCTATAAATGTCAGGTGA
ATGCAATAATTTGTAGTTAATTTAACTAACAATGGTGCTTTTTAGTTTGTTGCAGCCAAG
TCAGGTAATATCGGGCTTCTGTCAAAAAAATATCGGCCTTTTAGTTCGTTGCATCTAGTT
ATGCTGATTGATTTCTTGTTCCCTAATACTAGCAGCCAAGTCACATAATATCGGGCTTCT
GTCAAAAAAATATCGGGCTTTTGTCTGATTTTGTGATGTTCTATTAGAAAGTTAATTTTG
GATAGTCTTGGTTCGAACAATGCAGCCTTTATGTTACTGCTTTTACTTGTGTGTAACCTC
TTCACAAAATAGGAGTCACTGTCAAAAGCTATTGTTTCACGCAAATGACAAATATATCTT
GTGAAATCATTTTATATTATTTTCTGCAGCTTGAAACATATACCTTTAACATAATTAGGC
CTTGTATAATATGGTTGCTATTGCTATGATTCACATTGTTTATGGAAATGGTTTCTCAAG
CATTGTGGTTGAATAGCTTTCGTCGTTAAAAACCAAGGGTATTTCAATCCAGATGTCCTT
TAAAGTATTCTGGTGGAAAATACCATTATAATTATTCCTCTAATGAATAATTATACTTCA
TAATTGATACTACAGTCCAAGTTAAAGTTAAATGACACAGGTTGACATCACATTATCGCA
ATGTCTCACACAACACAGTGAGTGAATGTTATTAATTTGGTATAAGATAGCTTGCCAGAA
ATAGAACAAATGCTACAAGAATTCAGTATTTGTGATGACTATGATATGATTACAGGAATG
TATACAAGCTAAATAACTCACTGATCACTCCTTATCTTAACTTGGAAATTGAGTAATGCT
TTATTTGGTGTGCAATTTATTAGAGAATAGAAATAAAAGTCACTGTTTCATCGTTGATTG
GTAGTTGAATGCAAATCTGTATGTAGTCAATGGGCTAACAATAGGGTGGTTTAGTTTAAC
TGTTCATGTGAATTTGATAGCTTTCTTATAAGTTCGTACTAGTGACCTAGGTGCTGGAAG
GTGATAAATCACTAAATCAGGCCATAGTTTTTTTTTCTAGGCTTCTCGAGTCTTAAAAGG
CGTTTCATGCTAGTCTACTATAAAGCTGGTATCGCCAGTCTTGGTTTGTGCTGTATGTAT
TGCTCAACCCTTAGTGAGCAAATCAGCTATCAATATATTGTTTTTGCTTTGCTCGTGTAG
CTTTTAAAAAACTGGAGTTATTGTGAAAACTATTTTCTGAATGCAATTATATGGTTTTGA
TTGGTGCGCAGCAGCCCATTTCATTTCGAGCAAATATGATTTTATGATATGATGCTTGTT
ATGATACATTCATGTTTCTGTAATGATTATCTAATATTGTTAAATGGCTTTGATGGTGGT
TCTATACCATTGACTTGTGGTTGCACAGATGGTTCTGCAATCTGCATTAGGTTTTTTTAC
CATTTACAAAATAATATATGCTAAGGTTAAGTTGGTGATAACCAAATGTTTTAAATTTAG
TAATTCATGATGGAAATTAGAATTCAAGCTAATTTCTATATGACCATTGACCAATGTTGA
CAGCACAATGTCTCACACGACCCAAGTGGGTATTAGTTGGCATTAGCATTACACAGCTGA
GTTACTGAACCTATCATTGTTTTGGATAAAATGGTGTAGTTTTAGTATATTGCAAGTGAA
TGTGGTGTTGTGTAAACCATCTGTGGCCCATGACTACTTGTCAGGCACAGGGTGCTCTGC
ATGCTCGCACGAGAATATTTGTGTTTATGCACACACCAACGTATGCCTTGGAAAAAGACT
TCACTGTGGCCAATACAACATTGCCTGTGAGGGAGCATATAATTTATCATTTTCGTCCAA
CAAAATTAGCGTTTTCTGATGCAATATATGATCAACTTGTGGTAGTACAAGTGTTTTCTC
ATGGGTTTTGTCACAACTATTTAAATTTGTGTTGGTGCCTTTTTGTTCACCAAACACTAT
AATGAACCGCCTGGCGGTACTTGGCACCTTTAGATGATGTAGGGTCAAATAAAGTGGTTA
TCCTAAATGTGGGGCAACACATCTATGATGGTCACCACCTATTTGGGACCAAACAGCAAC
GAACTCTAGGGCCTTCTCGTGATGAGCAATACCTTGGGTTTGGCTCCGCGAGGTAAACAG
TGGTGGCGGTCTGCGACGGGTCGCCGGGTCGCAGTGAAGGCGCTGCGTGGGCGCGGACGG
TCCGCGACTCTGGGCCGGACGGTCCGCAACCTGGCGGTAGAAGCGGCGCCTTCACTGCGC
GCAGTCCGGACGGTCCGCGATGGCGCAGGGTCGTCTTCTTCTCCTCGTATGACCTAGATT
TCGTCTCCTGGGGGAGAGACCTTAGGGTGCTCCAGGTCAGCAGGTCACCCGGGGCGTCTC
CAGATGACGTAGAGTCACCTAGAAATTAAGAGATCAATTCGAAGAAGAGATCTTGATTGA
AGTACACGAAGTAGATCTTGCCCCTCAGGAGGGGTAAAGATCATAGAGTTGTCCTGGGGT
CGGCAGGCCACCCCAGGACGAATCTAGACGACGTAGAGTCGAATAGGGGTGGAGGTGGAT
ATGTGGAAGGCTACAACTAGAACTAAGCTACATCTACTCCTAGAACAGGAAAAATAAATA
GAGTAATTGGTTCGATTGGAATGTGTTCGGGGGTTCTCAATCGGTCGTACCCCTTTATAT
TTATAGGGGAGGAGGTCTGAACCTTTTCCTAAGAGATAGCCAACAAACTCTCACGTGATT
AGATGGATAACCACGCACGAGATAAGGATAAACATCCGAGTTAATCTAATCTCGGGACAC
GCGGACCGTCCGGGCCCAAGGACTGGACCGTCCGCTCATTTTGGTGTCCAACAATTTGAA
AACCAGAATTATGGTGCCAATATATCAAAAAATAAATACACTTCAGTCAAAATTCTGTAA
TACTGCAATGAAAAAAACTACAATTCTTTTTTCTTGAACATCTTGCTGTTTGAACTTGAA
TTGAAGGTAAGCTTTAGATGATAGATTGACGCTACGGTGTCTTACTCGACCCAATGTGAA
TGCTAGCTGGTATAGGATACTACTATTGGATCAAATTCTATTATTTTAGGGATCTTGCAA
GTGATCAGGGGTGTTCTGTGAACCCAGTGTAGCACATGTACAGTTTGGCAAGCACAGGGT
GCCTTCTACCAGACAAAAAAAATCATTCTATTGCATTTGTGTGAACAAACAATATGTGGC
CAAACAAGTTCATGTTTCTCTCGTCATGGTATTGTCTAGGGGAAAGTTTACCCAAAATTT
CTTTATATCTGCGGAAAGGCTTCCCCAAATATTCAGCACATAATCGGGATGTTGCTGGCA
ATGGCCAGTCCAACATTTTGTACTATGAGGTCATGCAACAATTAGCTTAAATTTTTCGCA
ATGCAATAGTTGTATAAATATGACAGTTACACAACAGCTATGCTTTATTTTCTACTACCA
ACCAAAGTTCTAATGGGAAGTCTGAAACTAATTTGAGACTAACTAGAACATGCCCTCTTC
TCCTACATCTTTTTTCACGCAATTTCACTTGACGTGGTTGATCGCTGCTCGCAGATGATG
AAGAAGAGGCACAAGATCGAGCGGGACCTGAGTATCGGCGAGGAAGTCGGATGGTCAAAG
AACCAGCAGGTGGCTAAATCCAACCCCACCCTCGCTGCAATGAACAAGAAGTTTGGGATG
ATCCACGGGCTGTCATCACTGGCCAACATCATGTCGTTTGGCAGCTTGGCCATGCACTCC
TGGTACCTGGCCAGCAAGCTAGAGCTGTGAAGAAGGGGAGACAAGACGACACCTTTCTCC
GCCTTGTTGTGAATCTTGTCAGTTGTCACGATGGTGTTGCTTGCTGCTCTCAAACCAGTT
TCAAAATTGGAATAACTAGAAAATGGCCAGACACATACAGACAGGGTTTTGTAAAATCAC
ACTATCTCCGATCTCGAATATTTTGCAAAACTGCATGTCCTCGTGCAAAACCATGTCCAC
ATGATGACACCGTTCTCGAATATTCTGTCGACACCAAAACCACATGTGGATTTATGCCAT
TATGAAAGCTAGGTTTTTCC