Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041601_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:129401378:129403931:1 gene:Zm00001d041601 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIT zinc finger ;PAPA-1-like conserved region
Sequence

ATGGAAGGCGGCGAGGGATCCGGATTCGATGGGGCACACATGAAGAAGCGGCGGAGCAGC
GCGGTGAGGCGGCCGAGGCCGGAGGGCGGCCCTGCCGCGGTGCAGCGGGACAACGGCTCC
CCTCCGCCGCTGTCGGTGACATCCAGGAGCGCCCCGAGGAGTCTGCTGTTGACTTCGGAC
GAGAACGCCACCGGCCCCGACGGGGGCAACCGTAGGCGTGAGTTCCTCCTGAACGCTCCG
TCGCCGGAGCGCGCGACCAAGGGGAGCATCCGGCTGCGTTCCGAGGCCGCAGCCGGTGGC
TCCAGGAAGAGCGACGGTAGCAGCCATGCCCCTGAGGGGAACCGTGAGAAGCTGGGGAAG
GTGAAGCTCAAGATTCGTAATGTGCTACCGAAACCGAACCCTGATACGTCGCCTGTGAAG
CCCCCACGGCCTGTAGATTCGCGGCACCAGCAAAAGCATGGCCATCTGAAGGAAGGCACA
AAAGATTCTGACAGGCCAACCTCTTCACGAGACAAGAAAGCCAGAAAGGAGAGGTCGATT
CAAGAAACAATGGCACATGTGCAAGCAGACAAATTTCAGAGAGAACCTACTTCAGATCCT
GTACGGAAGAGTAGGAGGCTTGCTAAGAAATCTGTGGACAATGAATTTGACGAGGACTTT
GGTACAAGCAATCTTGGAACTCCTGAAGATTGGGATGGTACTCGTGAGTCTAAGAGCAAA
GGAAGTGGCTCTAAGAAGAGTGCCTCAAGGAAAGGGAAAAATAGGAGCAAGGTGTATGGG
GCTGATAACGATTTTGTTACTTCCCGATCTGGCAAGAAAAGATCTAGAGAATCAGCTGAT
GATGATAATACTGAAGAAGAACCAACCTCAGACAGTGAACCTGACGTTGAAGACACTGAA
CAGAAAACAACGGCGACTGAATCACCTGTCAATATTAGAAGTGAACCTCTCACGACACGT
CGCCGCGCCCTTCAATCATGGATGGATGGCAGCAGCATCAGTACTGTCGAGTTCCCTGAT
GGGCTACCTCCAGCTCCTTCGAGAAGCAAGAAGGACAAGCTTTCTGAAGAGGAAATGCTT
GCGAAGAAGGCTGAAGCTGCTCAGAGGCGCAGGATGCAAGTGGAAAAGGCCACTAAAGAA
AGTGAGGCGGAAGCTATAAGGAAAATATTGGGCATTGACTCTGAGAAGAAGAAAGAAGAG
AGGAAGCAGAAGGAGCGAGGAGAGAAGGAGCGAGCTAGCAGAGCACAAAACATGGCGGCA
AACTCGATCCGCTGGGTCATGGGGCCCACCGGAACAGTTATTTCGTTTCCACACGCAGTA
GGCCTCCCCAGCATCTTCGACTCCAAGCCACACAGCTATCCTCCTCCACGGGAGAAATGC
GCTGGGCCATCGTGCACGAACGATTACAAGTACAGGCACTCCAAGCTGAACCTCCCCCTC
TGCAGCCTCAAGTGCTACAAGGCCGTCCAAGGAAATGCTTGA

Peptide Sequence

PEP ID

Zm00001d041601_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:129401378:129403931:1 gene:Zm00001d041601 transcript:Zm00001d041601_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIT zinc finger ;PAPA-1-like conserved region
Sequence

MEGGEGSGFDGAHMKKRRSSAVRRPRPEGGPAAVQRDNGSPPPLSVTSRSAPRSLLLTSD
ENATGPDGGNRRREFLLNAPSPERATKGSIRLRSEAAAGGSRKSDGSSHAPEGNREKLGK
VKLKIRNVLPKPNPDTSPVKPPRPVDSRHQQKHGHLKEGTKDSDRPTSSRDKKARKERSI
QETMAHVQADKFQREPTSDPVRKSRRLAKKSVDNEFDEDFGTSNLGTPEDWDGTRESKSK
GSGSKKSASRKGKNRSKVYGADNDFVTSRSGKKRSRESADDDNTEEEPTSDSEPDVEDTE
QKTTATESPVNIRSEPLTTRRRALQSWMDGSSISTVEFPDGLPPAPSRSKKDKLSEEEML
AKKAEAAQRRRMQVEKATKESEAEAIRKILGIDSEKKKEERKQKERGEKERASRAQNMAA
NSIRWVMGPTGTVISFPHAVGLPSIFDSKPHSYPPPREKCAGPSCTNDYKYRHSKLNLPL
CSLKCYKAVQGNA

Transcript Sequence

Transcript ID

Zm00001d041601_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:129401378:129403931:1 gene:Zm00001d041601 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIT zinc finger ;PAPA-1-like conserved region
Sequence

TTGGCCAACGAACTCACGGTCTCTCTCCCCTTTTCCCTGCGTCCAGATTCCGGCCAGATG
GAAGGCGGCGAGGGATCCGGATTCGATGGGGCACACATGAAGAAGCGGCGGAGCAGCGCG
GTGAGGCGGCCGAGGCCGGAGGGCGGCCCTGCCGCGGTGCAGCGGGACAACGGCTCCCCT
CCGCCGCTGTCGGTGACATCCAGGAGCGCCCCGAGGAGTCTGCTGTTGACTTCGGACGAG
AACGCCACCGGCCCCGACGGGGGCAACCGTAGGCGTGAGTTCCTCCTGAACGCTCCGTCG
CCGGAGCGCGCGACCAAGGGGAGCATCCGGCTGCGTTCCGAGGCCGCAGCCGGTGGCTCC
AGGAAGAGCGACGGTAGCAGCCATGCCCCTGAGGGGAACCGTGAGAAGCTGGGGAAGGTG
AAGCTCAAGATTCGTAATGTGCTACCGAAACCGAACCCTGATACGTCGCCTGTGAAGCCC
CCACGGCCTGTAGATTCGCGGCACCAGCAAAAGCATGGCCATCTGAAGGAAGGCACAAAA
GATTCTGACAGGCCAACCTCTTCACGAGACAAGAAAGCCAGAAAGGAGAGGTCGATTCAA
GAAACAATGGCACATGTGCAAGCAGACAAATTTCAGAGAGAACCTACTTCAGATCCTGTA
CGGAAGAGTAGGAGGCTTGCTAAGAAATCTGTGGACAATGAATTTGACGAGGACTTTGGT
ACAAGCAATCTTGGAACTCCTGAAGATTGGGATGGTACTCGTGAGTCTAAGAGCAAAGGA
AGTGGCTCTAAGAAGAGTGCCTCAAGGAAAGGGAAAAATAGGAGCAAGGTGTATGGGGCT
GATAACGATTTTGTTACTTCCCGATCTGGCAAGAAAAGATCTAGAGAATCAGCTGATGAT
GATAATACTGAAGAAGAACCAACCTCAGACAGTGAACCTGACGTTGAAGACACTGAACAG
AAAACAACGGCGACTGAATCACCTGTCAATATTAGAAGTGAACCTCTCACGACACGTCGC
CGCGCCCTTCAATCATGGATGGATGGCAGCAGCATCAGTACTGTCGAGTTCCCTGATGGG
CTACCTCCAGCTCCTTCGAGAAGCAAGAAGGACAAGCTTTCTGAAGAGGAAATGCTTGCG
AAGAAGGCTGAAGCTGCTCAGAGGCGCAGGATGCAAGTGGAAAAGGCCACTAAAGAAAGT
GAGGCGGAAGCTATAAGGAAAATATTGGGCATTGACTCTGAGAAGAAGAAAGAAGAGAGG
AAGCAGAAGGAGCGAGGAGAGAAGGAGCGAGCTAGCAGAGCACAAAACATGGCGGCAAAC
TCGATCCGCTGGGTCATGGGGCCCACCGGAACAGTTATTTCGTTTCCACACGCAGTAGGC
CTCCCCAGCATCTTCGACTCCAAGCCACACAGCTATCCTCCTCCACGGGAGAAATGCGCT
GGGCCATCGTGCACGAACGATTACAAGTACAGGCACTCCAAGCTGAACCTCCCCCTCTGC
AGCCTCAAGTGCTACAAGGCCGTCCAAGGAAATGCTTGATAGGGCTCAGGGAACATAATG
GTGGGGACTGGGGAGTTTGTGCTGTCTCCATTGGCATGCCATCTATGGCTGGAAATAAGG
CATGAAGATGATGTGCATCTATGGTGGGAGTTCTAAAGGATGCAATGCAATAAGGGTCTG
CCTGCAAATGTATAGAAATGGATATCTATCTACATGTAGATTTGTGGGGTAGAGATGTAG
AAGATCTTTTTGCTGAACCTGTGATTAAAGATGCCGGATGTTATTGCTATCCCACAATAC
GCATCCTGTTTTTAGTTCTTTTGAGAGAAAAAGGTGTTTTTGTTGTAGATACTGCACGTA
CGTTTCATATGTATAATAAAGAGCAGAATAAGTTTTT