Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041590_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:128629144:128633470:1 gene:Zm00001d041590 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear2 description:Boron transporter 1
Sequence

ATGGCGGTTTGCCAACGGAATGTTTGCAATTGTGTTGTCGTTTGGCCTTTTACTCACTGC
CCTGAGGAGCAGGAAGGCACGGTCATGGCGCTATGGAGCAGGCTGCGTGGCTTCATCGCT
GACTATGGTGTTCCACTGATGGTGCTAGTTTGGACTGGAGTGTCTTACATACCATATGGA
AATGTACCAAAAGCAATTCCGCGACGCCTTTTCAGTCCTAATCCATGGTCCCCTGGTGCA
TACGATAACTGGACAGTCATCAAGGATATGACACAAGTTCCACTCCTCTACATCATTGGT
GCCTTCATACCAGCAACAATGATTGCTGTTCTCTACTACTTCGATCATAGCGTTGCATCT
CAGCTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCTCCATCCTTCCACTATGATTTG
CTTCTCTTAGGCTTCCTGACGTTAATGTGTGGCCTTATTGGTATCCCTCCATCAAATGGT
GTCATTCCACAATCACCCATGCACACGAAGAGTTTGGCTACTCTCAAGCATCAGCTGCTT
CGTAACCGGCTAGTAGCCACTGCACGAAAGAGCATGAGCCAGAATGCGAGCTTGAGCCAA
CTGTATGGCAGCATGCAGGATGCTTATCAGCAGATGCAGACACCACTGGTTTATCAGCAA
CAGTCTGTCAGAAGAGGCTTAAATGAGCTCAAGGACTCAACAGTCCAGCTAGCTTCGAGT
ATGGGTAACATTGATGCACCAGTTGATGAGACAGTCTTTGACATAGAGAAAGAAATTGAT
GATCTGCTTCCCATTGAGGTCAAGGAGCAGCGCTTGAGCAACTTGCTACAGGCTTCCATG
GTGGGTGGTTGTGTCGCTGCTATGCCACTACTCAAGAAGATCCCTACATCTGTCCTCTGG
GGCTATTTTGCCTTCATGGCCATTGAGAGCTTGCCTGGTAACCAGTTTTGGGAAAGGATC
TTGCTGCTCTTCACTGCTCCCAGCAGAAGATACAAGGTGCTTGAAGAGTACCACACCACG
TTCGTCGAGACAGTGCCATTCAAGACGATAGCCATGTTCACAATGTTCCAGACAGCGTAC
CTGTTGGTCTGCTTTGGAATCACATGGATTCCAATAGCTGGAGTTCTTTTCCCCCTCATG
ATCATGCTCCTGGTTCCAGTCAGGCAGTACATCCTCCCCAAGCTCTTCAAAGGTGCGCAT
CTAACTGACCTAGATGCAGCTGAATATGAGGAATCGCCGGCTATACCATTCAGCCTTGCT
GCGCAAGACATCGATGTTGCATTCGGAAACACCCAGAGTGCAGAAATCCTAGACAACATG
GTCACAAGAAGCCGGGGTGAGATCAAACGCATCAACAGCCCGAAGATCACCAGCTCAGGT
GGCACGCCTGTGGCAGAACTGAAAGGCATCCGCAGCCCATCCATTTCTGAAAAAGCATAC
AGCCCTCGTGTCATTGAGCTCTGGCATGAGCGCAGCCCTAGGACGCCGTCCATGCTGGGT
GAAGGCTCAACACCAAAGTGA

Peptide Sequence

PEP ID

Zm00001d041590_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:128629144:128633470:1 gene:Zm00001d041590 transcript:Zm00001d041590_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear2 description:Boron transporter 1
Sequence

MAVCQRNVCNCVVVWPFTHCPEEQEGTVMALWSRLRGFIADYGVPLMVLVWTGVSYIPYG
NVPKAIPRRLFSPNPWSPGAYDNWTVIKDMTQVPLLYIIGAFIPATMIAVLYYFDHSVAS
QLAQQKEFNLRKPPSFHYDLLLLGFLTLMCGLIGIPPSNGVIPQSPMHTKSLATLKHQLL
RNRLVATARKSMSQNASLSQLYGSMQDAYQQMQTPLVYQQQSVRRGLNELKDSTVQLASS
MGNIDAPVDETVFDIEKEIDDLLPIEVKEQRLSNLLQASMVGGCVAAMPLLKKIPTSVLW
GYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEEYHTTFVETVPFKTIAMFTMFQTAY
LLVCFGITWIPIAGVLFPLMIMLLVPVRQYILPKLFKGAHLTDLDAAEYEESPAIPFSLA
AQDIDVAFGNTQSAEILDNMVTRSRGEIKRINSPKITSSGGTPVAELKGIRSPSISEKAY
SPRVIELWHERSPRTPSMLGEGSTPK

Transcript Sequence

Transcript ID

Zm00001d041590_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:128629144:128633470:1 gene:Zm00001d041590 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:rotten ear2 description:Boron transporter 1
Sequence

GTAGCGGTTACCTCCCTTTCGCTCTACTGCTCTCTCTCTCTCTCTGGACCTTGCCGTTCT
CTCCCTCGTCGGCAATCAGCCCGCTTCCTGTGCTCTCTATGCTCCCCTTCCGTTCGTAGC
CTCGGCCTTCGTCTCCCTCCATGGACCCGCGCTAAATGCATCGCGAGATTCCAAACCGGT
AGCGTTTCTTCCTGCTCCATCCGCCGCAAGATGTAAGCAAGGGCCTCACTTCACACCCGG
AGTGGGAGACCATCCAGAATACATCCTCAGATCTTCTTGTGTCTGAGAAAAAAGCGACGC
CCTTCAATGGAGGAGAGCTTCGTGCCCTTGCGGGGCATCAAGAACGACCTCCACGGGAGG
CTCGCCTGCTACAAGCAGGACTGGGCCGGAGGGTTCCGTGCCGGTATCAGGATCCTGGCG
CCGACGACCTACATATTCTTCGCGTCCGCGATACCGGTCATATCGTTCGGGGAGCAATTG
GAGAGGAACACTGATGGAGTCCTCACGGCAGTGCAGACGTTGGCATCCACTGCGCTGTGC
GGCGTAATCCACTCCATCGTGGGAGGGCAGCCGCTGCTGATCCTGGGAGTCGCCGAACCG
ACGGTGCTCATGTACACATTCATGTTCAGCTTCGCCAAGGACAGGCCCGACCTCGGGCGG
AGTCTGTTCCTGGCCTGGACCGGTTGGGTTTGCGTGTGGACTGCCATCCTACTCTTCTTG
CTGGCCATACTAGGCGCGTGCTCCATCATCAACCGGTTCACCCGCGTCGCTGGCGAGCTG
TTTGGGCTTCTGATCGCTATGCTCTTCATGCAGCAGGCTATCAAGGGACTTATCGATGAG
TTCCGCATTCCTGAGAGGGAAGACCGAAAGGCGCTAGAGTTTGTTCCATCATGGCGGTTT
GCCAACGGAATGTTTGCAATTGTGTTGTCGTTTGGCCTTTTACTCACTGCCCTGAGGAGC
AGGAAGGCACGGTCATGGCGCTATGGAGCAGGCTGCGTGGCTTCATCGCTGACTATGGTG
TTCCACTGATGGTGCTAGTTTGGACTGGAGTGTCTTACATACCATATGGAAATGTACCAA
AAGCAATTCCGCGACGCCTTTTCAGTCCTAATCCATGGTCCCCTGGTGCATACGATAACT
GGACAGTCATCAAGGATATGACACAAGTTCCACTCCTCTACATCATTGGTGCCTTCATAC
CAGCAACAATGATTGCTGTTCTCTACTACTTCGATCATAGCGTTGCATCTCAGCTTGCTC
AGCAGAAAGAGTTCAATTTGAGGAAACCTCCATCCTTCCACTATGATTTGCTTCTCTTAG
GCTTCCTGACGTTAATGTGTGGCCTTATTGGTATCCCTCCATCAAATGGTGTCATTCCAC
AATCACCCATGCACACGAAGAGTTTGGCTACTCTCAAGCATCAGCTGCTTCGTAACCGGC
TAGTAGCCACTGCACGAAAGAGCATGAGCCAGAATGCGAGCTTGAGCCAACTGTATGGCA
GCATGCAGGATGCTTATCAGCAGATGCAGACACCACTGGTTTATCAGCAACAGTCTGTCA
GAAGAGGCTTAAATGAGCTCAAGGACTCAACAGTCCAGCTAGCTTCGAGTATGGGTAACA
TTGATGCACCAGTTGATGAGACAGTCTTTGACATAGAGAAAGAAATTGATGATCTGCTTC
CCATTGAGGTCAAGGAGCAGCGCTTGAGCAACTTGCTACAGGCTTCCATGGTGGGTGGTT
GTGTCGCTGCTATGCCACTACTCAAGAAGATCCCTACATCTGTCCTCTGGGGCTATTTTG
CCTTCATGGCCATTGAGAGCTTGCCTGGTAACCAGTTTTGGGAAAGGATCTTGCTGCTCT
TCACTGCTCCCAGCAGAAGATACAAGGTGCTTGAAGAGTACCACACCACGTTCGTCGAGA
CAGTGCCATTCAAGACGATAGCCATGTTCACAATGTTCCAGACAGCGTACCTGTTGGTCT
GCTTTGGAATCACATGGATTCCAATAGCTGGAGTTCTTTTCCCCCTCATGATCATGCTCC
TGGTTCCAGTCAGGCAGTACATCCTCCCCAAGCTCTTCAAAGGTGCGCATCTAACTGACC
TAGATGCAGCTGAATATGAGGAATCGCCGGCTATACCATTCAGCCTTGCTGCGCAAGACA
TCGATGTTGCATTCGGAAACACCCAGAGTGCAGAAATCCTAGACAACATGGTCACAAGAA
GCCGGGGTGAGATCAAACGCATCAACAGCCCGAAGATCACCAGCTCAGGTGGCACGCCTG
TGGCAGAACTGAAAGGCATCCGCAGCCCATCCATTTCTGAAAAAGCATACAGCCCTCGTG
TCATTGAGCTCTGGCATGAGCGCAGCCCTAGGACGCCGTCCATGCTGGGTGAAGGCTCAA
CACCAAAGTGAATGAAAGCAACGATACATTGCTTAAGCTATTCAACCACTGGTCATCAGT
TATATGAGTGGTTTTAAAGTGGTTTCAGTGTTAGTATCCTTATATGAAGATGTCCTCTGA
TGAGATTACTACTTATGTGTATCTCCAGTCTCTCTTTTTTTTGTTCTCCTGATTAAAGGA
GTGATATACCTGTAATCTCTGAACTAGCAGAATATTAGAGTGGCTACT