Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041525_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:125901674:125905287:-1 gene:Zm00001d041525 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGATAAGCAGGGCAACGCCAAGAACGGGGAAGTGGGGAACAATGTGTTTCACAGGATG
ATTCTTAATCAGTTTGCTGGGGACTTAGGTCTCGACGAGGACAATGTGCCTTGCAATACT
CCAAGAAACTCCGCTCGCTCTGCATTTGGTGGCAGGGCAGTTGCTTCTACTAGCAGCAAC
CACAGCACTGATTCATTGAGCCCAGGCGAATATGTGAGGGATCCTGGATCCCTTCTAAGT
TTACAACCATGGATTTTTAGAAGAAACGGCTCACAGAACCATGGGGAAAGTGTGCTTGCG
AGCGGTAAGGGCAAGAATCGGGTCGATGTCCTTCGAGAGGGTCATGCTGTTGGAATCTCA
CCAAGGAGTCCTGGTCTTGGTTCTGGGCCTGGAAGAGGTTGTGGAGCTGTTAGGAGCAGA
AGATCTCGTTCGAATTTGATGAAGCCACTTGTGCCAATGGACAACTCCTACGTCCCACAG
CTTTACAGTGAGAACTTTGAAATCGAAGAATGCACATTTGCTCCAGCTCCTTCCCCAGCT
TCTGCTAGGCCATTCATTGTGACAGATGGTACAAGGATAATTAGTAAATCACGCTATGAG
CCAGTACCTCTGCCCTTTAATATCGGAATAGACAAGGAGGAATGTAGAGGCACCTCAGCG
ATGCTAGGAGGTCTGATTGGAATTGTTCCTCTACCTGAGTTGAAGAAACTCAAACATGAG
TGCAGAAATTCACATGATGGAAGGCTTGGTCTGTCTGGTTCTCAGCGAAGTAGCAGCTCA
CATGAACAAGCAGGTTTACATGATCGATTCCTCCTATTCTCTACTGGGGTGAGCATTGGT
ATTCTATGGTCTTCTCTGTCAAACAAGAAGGAATTTGATACGCTGAAGGGCACACTAAAA
CGAATGGAAAACTTAGTTCAGGATTTACAAGATGAACTGGAGATGAAAGAGGGTTTAACT
GTGAAGGAATTGCCTAATGAAACTTCTAGCGAACATGATGATGATAATAGCAAACCACAA
GTAGTTGATTCAGAGGCAATGAGCAAAATTGAAGCGGAGCTTGAAGCTGAGCTTGCAAGA
CTGGAACTGAATATCACTTCGAAACGTTTGGAAGAAGAAACATCTGACTTCAATGAGGCT
GACAAGGAGTTCATTGGTGACATTGTTTGTGGGGAACTGAAAGCTGATATGGTCCCCCGG
GACGTCACAGATTACAGCAGTGAATGTGACTATGGCAGGGACAGCAGGGAAAGTTCCCCA
GACTACACATGTGGAGCAAACTATCCCGTCTCACCTAGAGATCTCAGCATTCGTCTCCAC
AAGGTGATCCAACGTAGGCTTGAAGACCGAGTCAAGGAGCTTGAATCATCAATTGCCCAC
AGACAGAAGCAGGCGCAACTACAGATGATGGTGACTGATGAAATATTCTCTGAACCGATA
TGCTCAAACAGTGAATCAGGTTCTTCAGGACGAGGAAGTCCCATTTTCATACAAGAAATT
AGCTCCTTGGCAGAACCATATTGTCTAAACCTATCTGGAGACGCGCTTGAAGCTTATGAC
GAAGCTTACGAAGAATTCATGAGAATTGCGGACTCCCCTTGCACTACAAGTACAAATGGG
AAGGCACAGGCAACCGAAGATTACCTGGTAGACCGTGGTTTAATCTGGGGAATGGAGGAC
AGCTCTACGAAGCTGAAAGAAGTACCCACTTGGGAGAGAGTTCTAAAGAGCACAGATCCT
AACAGGGATCAAGAGAGCGATAGAGATGAGTCGGACGACGAAGACGACGACTGTAAAGTG
CTGATTCAGCAGATTGTAGAGAGAACTAAACAAGGTTCCCCTGTACTTGTTAACGCTCAA
AAACTTCTGTTTTCTGTGGATCAATAG

Peptide Sequence

PEP ID

Zm00001d041525_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:125901674:125905287:-1 gene:Zm00001d041525 transcript:Zm00001d041525_T001 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MDKQGNAKNGEVGNNVFHRMILNQFAGDLGLDEDNVPCNTPRNSARSAFGGRAVASTSSN
HSTDSLSPGEYVRDPGSLLSLQPWIFRRNGSQNHGESVLASGKGKNRVDVLREGHAVGIS
PRSPGLGSGPGRGCGAVRSRRSRSNLMKPLVPMDNSYVPQLYSENFEIEECTFAPAPSPA
SARPFIVTDGTRIISKSRYEPVPLPFNIGIDKEECRGTSAMLGGLIGIVPLPELKKLKHE
CRNSHDGRLGLSGSQRSSSSHEQAGLHDRFLLFSTGVSIGILWSSLSNKKEFDTLKGTLK
RMENLVQDLQDELEMKEGLTVKELPNETSSEHDDDNSKPQVVDSEAMSKIEAELEAELAR
LELNITSKRLEEETSDFNEADKEFIGDIVCGELKADMVPRDVTDYSSECDYGRDSRESSP
DYTCGANYPVSPRDLSIRLHKVIQRRLEDRVKELESSIAHRQKQAQLQMMVTDEIFSEPI
CSNSESGSSGRGSPIFIQEISSLAEPYCLNLSGDALEAYDEAYEEFMRIADSPCTTSTNG
KAQATEDYLVDRGLIWGMEDSSTKLKEVPTWERVLKSTDPNRDQESDRDESDDEDDDCKV
LIQQIVERTKQGSPVLVNAQKLLFSVDQ

Transcript Sequence

Transcript ID

Zm00001d041525_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:125901674:125905287:-1 gene:Zm00001d041525 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GTGGTCCTGTACTGTATACTCCTGTGCTTGGTGGTTTGGCTCCTCGGGATGTTCTTCCTG
CCTGCCCTGCCCCCTCCGGACCAAACCCAAGCGCCCAAATCCGACCCCCCCAAATGCCTT
CTCTGTGATGGTCTGATTCTGATGGATGCTCCCCACCTGCTCTAGCGGTCTAGCCCCAGC
TCGCGCCGCCTCGCTTCCTCCGTTCGCGACGCCGGCATTTCGTGGCGCCTTATCCTTCTC
TGCCCTTCTGGTGGGTGAGATAAAGGGGCAGCGGGTTGTTTTTTCTGAAGGTTTCGCGGC
CACTTCCAGCCGGATCCACGGCCGCGGCCACCGCCGCCGCTCCCTCGGCCTGGTGGAGAG
GAGGGGTGATCCATCCGAAGGTGGCGGTTCCATTTCTTGTTTTCCTGATTGCCTGAGTAA
TTGTGGACATGAAGAGACTTCTGTGGTGCTGTTGAAGAATTAGTGCCAGTCTCGATTTCT
CCTGATGGATAAGCAGGGCAACGCCAAGAACGGGGAAGTGGGGAACAATGTGTTTCACAG
GATGATTCTTAATCAGTTTGCTGGGGACTTAGGTCTCGACGAGGACAATGTGCCTTGCAA
TACTCCAAGAAACTCCGCTCGCTCTGCATTTGGTGGCAGGGCAGTTGCTTCTACTAGCAG
CAACCACAGCACTGATTCATTGAGCCCAGGCGAATATGTGAGGGATCCTGGATCCCTTCT
AAGTTTACAACCATGGATTTTTAGAAGAAACGGCTCACAGAACCATGGGGAAAGTGTGCT
TGCGAGCGGTAAGGGCAAGAATCGGGTCGATGTCCTTCGAGAGGGTCATGCTGTTGGAAT
CTCACCAAGGAGTCCTGGTCTTGGTTCTGGGCCTGGAAGAGGTTGTGGAGCTGTTAGGAG
CAGAAGATCTCGTTCGAATTTGATGAAGCCACTTGTGCCAATGGACAACTCCTACGTCCC
ACAGCTTTACAGTGAGAACTTTGAAATCGAAGAATGCACATTTGCTCCAGCTCCTTCCCC
AGCTTCTGCTAGGCCATTCATTGTGACAGATGGTACAAGGATAATTAGTAAATCACGCTA
TGAGCCAGTACCTCTGCCCTTTAATATCGGAATAGACAAGGAGGAATGTAGAGGCACCTC
AGCGATGCTAGGAGGTCTGATTGGAATTGTTCCTCTACCTGAGTTGAAGAAACTCAAACA
TGAGTGCAGAAATTCACATGATGGAAGGCTTGGTCTGTCTGGTTCTCAGCGAAGTAGCAG
CTCACATGAACAAGCAGGTTTACATGATCGATTCCTCCTATTCTCTACTGGGGTGAGCAT
TGGTATTCTATGGTCTTCTCTGTCAAACAAGAAGGAATTTGATACGCTGAAGGGCACACT
AAAACGAATGGAAAACTTAGTTCAGGATTTACAAGATGAACTGGAGATGAAAGAGGGTTT
AACTGTGAAGGAATTGCCTAATGAAACTTCTAGCGAACATGATGATGATAATAGCAAACC
ACAAGTAGTTGATTCAGAGGCAATGAGCAAAATTGAAGCGGAGCTTGAAGCTGAGCTTGC
AAGACTGGAACTGAATATCACTTCGAAACGTTTGGAAGAAGAAACATCTGACTTCAATGA
GGCTGACAAGGAGTTCATTGGTGACATTGTTTGTGGGGAACTGAAAGCTGATATGGTCCC
CCGGGACGTCACAGATTACAGCAGTGAATGTGACTATGGCAGGGACAGCAGGGAAAGTTC
CCCAGACTACACATGTGGAGCAAACTATCCCGTCTCACCTAGAGATCTCAGCATTCGTCT
CCACAAGGTGATCCAACGTAGGCTTGAAGACCGAGTCAAGGAGCTTGAATCATCAATTGC
CCACAGACAGAAGCAGGCGCAACTACAGATGATGGTGACTGATGAAATATTCTCTGAACC
GATATGCTCAAACAGTGAATCAGGTTCTTCAGGACGAGGAAGTCCCATTTTCATACAAGA
AATTAGCTCCTTGGCAGAACCATATTGTCTAAACCTATCTGGAGACGCGCTTGAAGCTTA
TGACGAAGCTTACGAAGAATTCATGAGAATTGCGGACTCCCCTTGCACTACAAGTACAAA
TGGGAAGGCACAGGCAACCGAAGATTACCTGGTAGACCGTGGTTTAATCTGGGGAATGGA
GGACAGCTCTACGAAGCTGAAAGAAGTACCCACTTGGGAGAGAGTTCTAAAGAGCACAGA
TCCTAACAGGGATCAAGAGAGCGATAGAGATGAGTCGGACGACGAAGACGACGACTGTAA
AGTGCTGATTCAGCAGATTGTAGAGAGAACTAAACAAGGTTCCCCTGTACTTGTTAACGC
TCAAAAACTTCTGTTTTCTGTGGATCAATAGGCCACTTCACTATACACCATTTATTTTTG
AGATATAGCATGTAGTGTCGAATTATTATTGAGAAAGGAAAATTATTAATTGTT