Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041510_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:3:125021035:125028016:1 gene:Zm00001d041510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 13
Sequence

ATGAGGCTTGTGAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAGCACCT
CTTGACTTGAAGGTTCCAGAAACTTTTGATGAATTTATCTGGGACATGAAGAATAATGAT
TATGATTTAAGGTCATTTGCTTTTAAGCTGAAGGCTACGATGGAGAGCATGGATAAGGAA
TTGAGGTCATCAAGGCTATCAGAGCAGTTGAACAAGCACTATGCTGCAATTGCTATTCCT
AAAGGCCTTTATTGCCTTTCATTGCGTTTAACTGATGAATACTCCTCAAATGCCCTTGCA
AGGAAACAATTACCGCCCCCAGAGTTGGTGCCTTGTCTTTCAGACAACTCCTATTTCCAT
TTTGTGTTAGCATCAGATAACATCCTTGCAGCCTCAGTTGTGGTCAGATCAACAATTAGA
TCATCACTGAAGCCTGAGAGGATTGTTTTCCATGTTATTACTGATAAAAAGACCTATCCT
GCCATGCATTCATGGTTTGCTTTAAATTCTCTCAGTCCTGCTATTGTTGAGGTGAAAGGT
GTTCATCAATTTGATTGGTTAACACAAGAAAATGTTCCTGTACTTGAATCAATAGAAACT
CAGCGCGCTGCCAGAGATCGTTACCATGGAAGTCGCCGCCCAATAACCAGTGCTAATGAT
AGCCCAAGGGTTTTTGCTGCCAAGCTTCAGGCAGGAAGTCCAACATATACTAATGTGCTC
AATCATATTCGAATATACATGCCTGAGTTGTTCCCAAGCCTCAACAAAGTCGTATTTCTT
GATGATGATGTTGTTGTCCAGCATGACCTATCACCACTTTGGGATATTGATCTATCTGGG
AAGGTTAATGGCGCTGTTGAGACTTGCAGAGGTGGAGATAGTTGGGTGATGTCTAAGAGG
TTCAGGAATTATTTAAACTTTTCTCATCCCCTCATTGCAAAAAACTTTGATCCTTCAGAG
TGTGCTTGGGCATATGGTATGAATATTTTTGACCTGAATGCATGGAGGAAGACAACAATC
AAAGACAAATACCATCATTGGGTCAAGGAGAACCTGAAGTCAAACTTCACACTTTGGAGG
CTGGGAACATTACCACCAGGCCTTATAGCATTTAAAGGCCATGTTCACCCAATTGATCCA
TCATGGCATCTGTTAGGTTTGGGGTATCAGGAAAAGACAGATATCAGTAGTGTTGAACAA
GCAGCAGTTATACATTATAACGGGCAAAGTAAACCATGGCTGGAGATTGGTTTTAAACAT
CTTCAGCCATTTTGGACAAAATATGTGAACTACTCAAATGAATTCTTAAGAAACTGCCAT
ATAATGGAGCCACAGTTGTAG

Peptide Sequence

PEP ID

Zm00001d041510_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:3:125021035:125028016:1 gene:Zm00001d041510 transcript:Zm00001d041510_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 13
Sequence

MRLVRDLYVMLDKVNSEEAPLDLKVPETFDEFIWDMKNNDYDLRSFAFKLKATMESMDKE
LRSSRLSEQLNKHYAAIAIPKGLYCLSLRLTDEYSSNALARKQLPPPELVPCLSDNSYFH
FVLASDNILAASVVVRSTIRSSLKPERIVFHVITDKKTYPAMHSWFALNSLSPAIVEVKG
VHQFDWLTQENVPVLESIETQRAARDRYHGSRRPITSANDSPRVFAAKLQAGSPTYTNVL
NHIRIYMPELFPSLNKVVFLDDDVVVQHDLSPLWDIDLSGKVNGAVETCRGGDSWVMSKR
FRNYLNFSHPLIAKNFDPSECAWAYGMNIFDLNAWRKTTIKDKYHHWVKENLKSNFTLWR
LGTLPPGLIAFKGHVHPIDPSWHLLGLGYQEKTDISSVEQAAVIHYNGQSKPWLEIGFKH
LQPFWTKYVNYSNEFLRNCHIMEPQL

Transcript Sequence

Transcript ID

Zm00001d041510_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:125021035:125028016:1 gene:Zm00001d041510 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable galacturonosyltransferase 13
Sequence

AATCCACAATCCGGAACCTCACCGTGGAGAACCCCAGATCAAACCCTTTCCCCGCCCATT
CCCCTTCGCACTTCCACTCTCCCAGTCCTCCGGTGCGATTCGTTTCTTCCTTACTTCCCT
GCCCGCCCGAGGGAGAAGACGAAATCGGGCGAGGAATCCGGCCGCCAGGGTTTCTTGATC
CGGGCGCGTGATTCGTCGTGCCCAGGCACCAGTGAGAAATCAAATCAAGAACACGCCAGC
GGAAGTGAGACGAGGGCGCGGGGAGGAATCAAGATCGCTTCTTTGAGCTGCCAGTTCCCC
CGCGCCAATGCCGGATCCGGCCGGCGGCGCCGGGCTGGCATGTTCCCTCTAACTGCCCCT
GTCCGCCGCCGCGGCTCCCGATGCTCGTGTGGTCTTCGGGAGCAGGAGAGGGAGCAGCGG
CCGTCGTGGGCGGCGGCTAGGAGCGAAGATGCAGATCCGGCTGTCGCCGAGCATGAGGAG
CATCACCATCTCCACTAGCCATGGCCTGCTAGACTTGATGAGGCTCAAGGTCGCCGCGCG
ACACTTTTCCTACCGCACCGTCTTCCACACCGTCCTCATCCTCGCCTTCCTCCTGCCCTT
CGTCTTCATACTCACCGCCATCATGACGCTAGAGGGCTTCAACAAGTGCTCCTCACTAGG
TACATACGTCAGCAGCAGCTGCTGCTGCTTCTGTTTTGAAATGATGCATATAGCTGCTTC
CAATTCCATTCTCCTAAAAAGTTCGCTGGTTACTGAAGTGGCTGCCGTGTGCTGCTACTT
CTGTTCCTGAAATGAGGTCAATACTGAAACAGTTCGAGACAGTGCATTGCTTGACTATCG
GTGCTCCATGTGCATGTGGTAGCACGAGATGCCTGATTCGGTTGGTGTGGATAACAGGAA
TGAGGTTAATAAACTTGGCTTTGTTAACCTGAATTATTGCGCACATGTAACTGCATTGGT
CTTGGTCATGACTAGCGTGTTTTGTGCTGCTCCAATGCTTCTTTGGGCAGCTTGGTCGTT
TACATGGTTATTTGCTGATCAGCCACCAAGGTGCCATCTTTGATTGCTCAAGCATCCAAA
AACCGCTTATTTTTGGCATATGTATGTAAAAAGTAACTCTACAGAGTGGTTGCTGCTTAT
ATGTGCCATATTAGGTTGTTGCTGGTTTGAGCCTATATGCAGTTCAGCTTAGGATTGTCT
AGGAAGACGTTTAGGTCCGCGCCTTCTTGGTAGGGGAAACGATGGTTCCATGAGGCTTGT
GAGGGATTTATATGTGATGCTTGATAAAGTAAATTCTGAGGAAGCACCTCTTGACTTGAA
GGTTCCAGAAACTTTTGATGAATTTATCTGGGACATGAAGAATAATGATTATGATTTAAG
GTCATTTGCTTTTAAGCTGAAGGCTACGATGGAGAGCATGGATAAGGAATTGAGGTCATC
AAGGCTATCAGAGCAGTTGAACAAGCACTATGCTGCAATTGCTATTCCTAAAGGCCTTTA
TTGCCTTTCATTGCGTTTAACTGATGAATACTCCTCAAATGCCCTTGCAAGGAAACAATT
ACCGCCCCCAGAGTTGGTGCCTTGTCTTTCAGACAACTCCTATTTCCATTTTGTGTTAGC
ATCAGATAACATCCTTGCAGCCTCAGTTGTGGTCAGATCAACAATTAGATCATCACTGAA
GCCTGAGAGGATTGTTTTCCATGTTATTACTGATAAAAAGACCTATCCTGCCATGCATTC
ATGGTTTGCTTTAAATTCTCTCAGTCCTGCTATTGTTGAGGTGAAAGGTGTTCATCAATT
TGATTGGTTAACACAAGAAAATGTTCCTGTACTTGAATCAATAGAAACTCAGCGCGCTGC
CAGAGATCGTTACCATGGAAGTCGCCGCCCAATAACCAGTGCTAATGATAGCCCAAGGGT
TTTTGCTGCCAAGCTTCAGGCAGGAAGTCCAACATATACTAATGTGCTCAATCATATTCG
AATATACATGCCTGAGTTGTTCCCAAGCCTCAACAAAGTCGTATTTCTTGATGATGATGT
TGTTGTCCAGCATGACCTATCACCACTTTGGGATATTGATCTATCTGGGAAGGTTAATGG
CGCTGTTGAGACTTGCAGAGGTGGAGATAGTTGGGTGATGTCTAAGAGGTTCAGGAATTA
TTTAAACTTTTCTCATCCCCTCATTGCAAAAAACTTTGATCCTTCAGAGTGTGCTTGGGC
ATATGGTATGAATATTTTTGACCTGAATGCATGGAGGAAGACAACAATCAAAGACAAATA
CCATCATTGGGTCAAGGAGAACCTGAAGTCAAACTTCACACTTTGGAGGCTGGGAACATT
ACCACCAGGCCTTATAGCATTTAAAGGCCATGTTCACCCAATTGATCCATCATGGCATCT
GTTAGGTTTGGGGTATCAGGAAAAGACAGATATCAGTAGTGTTGAACAAGCAGCAGTTAT
ACATTATAACGGGCAAAGTAAACCATGGCTGGAGATTGGTTTTAAACATCTTCAGCCATT
TTGGACAAAATATGTGAACTACTCAAATGAATTCTTAAGAAACTGCCATATAATGGAGCC
ACAGTTGTAGATTGTCGTGACAAAATAAATAAAAAGCATATATCAAGTGAAATTAAATTC
GTTATTTTGGAAGTCAACATCAGAGAGTTTATGAAGGGTAACTGGGGAGCTCAGTAACCC
CCCTCCATGGTCATATGCGTTGATGGTGAATATCCAATGAACAGAGCATCTTTCCCCTCA
TAGGACCCCTTCCCTTTTAATTTATTCCATTTGTATCATAGCTCATGAAATTATGATATT
GTTTAGGATGGTTCTTTTGTATTCGATGGAGCAATATATGAGTTGAATTGATGGTAGTCC
CATCATTATTGTAATTGATTAAGAGTATACACAGTTCATGTGAAAAGCATGGATTTTGAT
TAT