Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041506_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:124671506:124674990:-1 gene:Zm00001d041506 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Zinc finger C2H2 type family protein expressed
Sequence

ATGCCATCCAGAAGGCCTCAAAAGTACTGGTGTAAAATCTGCAATAAGAACTTCCCTTCA
GGGAGGGTTCTCGGAGGCCACATGTCGTGCCACCGGCATGCTGGCAAGCAGCTGAAGAGC
ACTCCTGACCTTGTCGTCAATCTGCCTGTGCCCCTGCTGGGTTCCAGTGATGAGAAGTCT
TCACTGTCATCTTTAGAATCTCAAAGCCTGCACTGCTCAAAGGTGTTATCTTCTTGCCAA
TCTCCGAGGGGGGACTTGGGGATTAACAGTGAGAAGAAGGTGGTGACAAAGTCTGAAGAA
CCTGAACCAGCTGGGTTGATGGAATCTTGGGCCAATGGTAATGGTGATCATGGGCACAGT
GTGATGCTATTTTCTCCAGTGAAGCGTAAGCGATCAAAAAGGATGATGCCAGTCCTCAAA
TCAGAGATGGACGCTGCAGTTGCTCTCTTGATGCTGGCAGAGCATTCTGACAAGACTTCT
GCTTATGAGGATTGCTGTGGGGGAGATAAGGATCGCAACATTTCAACACCCATGGTGTCG
AAGGAGATAAATCTGAATGCTTTTGATCAGCTGGTTCAATCTGACGAGTCCACAAACAGT
GCAAGGCTGCAATCTGACAAGAATCCAGCTTATGAGGGTTTTGATGAATACTGTGAGAAG
GAAAAGGAAAACAGTTTGAATTTGGCTGCTGATGATCCCAAGAAGGAAGTGCTGTTGGAT
GTGTTTGATTATGAGATGGATGTAGATGCTGAGTTCATGAAGCCAGGGGATGGCATTTCA
GTTGAGGAGTTGAAGTCCAGTGAACTTTCAGCTGAAACGAACATCAAGAGGTACCAGTGC
AAGGTGTGCAGAAAGTTATTAAGTTCAAGGTATGCATTGGGATGCCACATTAGGTTACAC
TGTGAGAAGGAAAGCAGTTTGAATTTGGTCACTGATGCTCCCAAAAAAGAAGTGCTGCTT
GATGTGTTTGATCATGGGATGGATGTAGATGCTGAGTTTATCAAGCCAGGGACTGACATT
TCAGTTGAGGAGTTGAAGTCCAGTGACCTTTCAGCTGCAATGAACATCAAGAAGCACCAG
TGCAAGGTCTGTAGAAAGTTACTGAGGTCAGGACATGCATTGGGAGGCCACATGTCGCTA
CACTTTAAGAAGAAGAACAAGTTGAATTCGGGTGTTGATGTTCCAAAGGAGGTTCTTCTG
GATGCATTTGTTCATGAGGTTGATGCAGATATTGAGTTCATGAAGCCAGCTACAGATTTG
GAGTTGAAATCCAGTGACATTTCAGCTGCAGTGAACGTCAAGACACACCAGTGCAAGGTC
TGTGGAAAGGTATTTGGGTCAGGGCATGCTTTAGGAGGACACATGAGGTTACACTATGTT
CGGAAGAGCAATCCTCAACAAGAGGTTGCTGATTGA

Peptide Sequence

PEP ID

Zm00001d041506_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:124671506:124674990:-1 gene:Zm00001d041506 transcript:Zm00001d041506_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Zinc finger C2H2 type family protein expressed
Sequence

MPSRRPQKYWCKICNKNFPSGRVLGGHMSCHRHAGKQLKSTPDLVVNLPVPLLGSSDEKS
SLSSLESQSLHCSKVLSSCQSPRGDLGINSEKKVVTKSEEPEPAGLMESWANGNGDHGHS
VMLFSPVKRKRSKRMMPVLKSEMDAAVALLMLAEHSDKTSAYEDCCGGDKDRNISTPMVS
KEINLNAFDQLVQSDESTNSARLQSDKNPAYEGFDEYCEKEKENSLNLAADDPKKEVLLD
VFDYEMDVDAEFMKPGDGISVEELKSSELSAETNIKRYQCKVCRKLLSSRYALGCHIRLH
CEKESSLNLVTDAPKKEVLLDVFDHGMDVDAEFIKPGTDISVEELKSSDLSAAMNIKKHQ
CKVCRKLLRSGHALGGHMSLHFKKKNKLNSGVDVPKEVLLDAFVHEVDADIEFMKPATDL
ELKSSDISAAVNVKTHQCKVCGKVFGSGHALGGHMRLHYVRKSNPQQEVAD

Transcript Sequence

Transcript ID

Zm00001d041506_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:124671506:124674990:-1 gene:Zm00001d041506 gene_biotype:protein_coding transcript_biotype:protein_coding description: protein; Zinc finger C2H2 type family protein expressed
Sequence

CGCCCTCAAGAAGTAGCAGCAGCGGCGAGGGTGAGCCGGGCACTGGGAGGCGCGCGGCGT
GCGTGGGCTCGTCTATCGCCGAGCTCCAGGAAACCGCAGGGTTTCGCCGCGGAGCTAGAT
TGTGCGGGGTTCCAGTGTCAAGCCCTGCCTGCACTGCGCATCCTGATCGTGCACATTCTT
TGGCTTTCTCTTCTCCTGGATACCGATGAACCAAGTACTCAAGATATGCCATCCAGAAGG
CCTCAAAAGTACTGGTGTAAAATCTGCAATAAGAACTTCCCTTCAGGGAGGGTTCTCGGA
GGCCACATGTCGTGCCACCGGCATGCTGGCAAGCAGCTGAAGAGCACTCCTGACCTTGTC
GTCAATCTGCCTGTGCCCCTGCTGGGTTCCAGTGATGAGAAGTCTTCACTGTCATCTTTA
GAATCTCAAAGCCTGCACTGCTCAAAGGTGTTATCTTCTTGCCAATCTCCGAGGGGGGAC
TTGGGGATTAACAGTGAGAAGAAGGTGGTGACAAAGTCTGAAGAACCTGAACCAGCTGGG
TTGATGGAATCTTGGGCCAATGGTAATGGTGATCATGGGCACAGTGTGATGCTATTTTCT
CCAGTGAAGCGTAAGCGATCAAAAAGGATGATGCCAGTCCTCAAATCAGAGATGGACGCT
GCAGTTGCTCTCTTGATGCTGGCAGAGCATTCTGACAAGACTTCTGCTTATGAGGATTGC
TGTGGGGGAGATAAGGATCGCAACATTTCAACACCCATGGTGTCGAAGGAGATAAATCTG
AATGCTTTTGATCAGCTGGTTCAATCTGACGAGTCCACAAACAGTGCAAGGCTGCAATCT
GACAAGAATCCAGCTTATGAGGGTTTTGATGAATACTGTGAGAAGGAAAAGGAAAACAGT
TTGAATTTGGCTGCTGATGATCCCAAGAAGGAAGTGCTGTTGGATGTGTTTGATTATGAG
ATGGATGTAGATGCTGAGTTCATGAAGCCAGGGGATGGCATTTCAGTTGAGGAGTTGAAG
TCCAGTGAACTTTCAGCTGAAACGAACATCAAGAGGTACCAGTGCAAGGTGTGCAGAAAG
TTATTAAGTTCAAGGTATGCATTGGGATGCCACATTAGGTTACACTGTGAGAAGGAAAGC
AGTTTGAATTTGGTCACTGATGCTCCCAAAAAAGAAGTGCTGCTTGATGTGTTTGATCAT
GGGATGGATGTAGATGCTGAGTTTATCAAGCCAGGGACTGACATTTCAGTTGAGGAGTTG
AAGTCCAGTGACCTTTCAGCTGCAATGAACATCAAGAAGCACCAGTGCAAGGTCTGTAGA
AAGTTACTGAGGTCAGGACATGCATTGGGAGGCCACATGTCGCTACACTTTAAGAAGAAG
AACAAGTTGAATTCGGGTGTTGATGTTCCAAAGGAGGTTCTTCTGGATGCATTTGTTCAT
GAGGTTGATGCAGATATTGAGTTCATGAAGCCAGCTACAGATTTGGAGTTGAAATCCAGT
GACATTTCAGCTGCAGTGAACGTCAAGACACACCAGTGCAAGGTCTGTGGAAAGGTATTT
GGGTCAGGGCATGCTTTAGGAGGACACATGAGGTTACACTATGTTCGGAAGAGCAATCCT
CAACAAGAGGTTGCTGATTGACCTGATTATGTTGTGATGGAAGAGCAAATACAGAAGCTT
GAATTGGATCCTCTCCTTTTTTATCTACGGAGACCACATTCACATGGTACAAATTAAATC
TGATTCTGAGCCATAGTGTGTGCTGAGCAGCTTTCAGCAGGCTGTGTGGGCCTGTGGCCA
AACCTGGTTCCACATTTTGTCCAAAACAGATACCTATTCAGTTACTGATAGATTCATTAG
TGGTTAGGAAACTAAAGAACTCCATCTGTTGTAGACAGTAGAGATTTTGATACTGATACT
TTCTTCTCTTGATCAACAAATTTTGCTGGATAGGAAGGCAAGGGTCTTCTTTAAGTCACT
GCCTGATTCTGAAACAATGTAGCAGGTAATGTGTGGTATCATGCAGTGTAATGCAAAGCA
TGAGCTTGTGATAGGTCTGAAGATCCCTCACAGTTCTCATTGGCTGTACAGTGATATTGT
TCTGTACATAGTTACATACTTATACAGAGCATATTCTTGTCTTGAAATAATAGTTCAATA
CAAATACTCGGATGAAAACTTAAA