Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041504_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:124540297:124543804:1 gene:Zm00001d041504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase GALT2
Sequence

ATGAAGCGCGCGCGCAGCTCCGAGGTATTCATCGGCGTAGGCCGGCTGCGCGCACGCAGG
GGCCTGGCGCCGCTTCTCGCAGCGGCGGCTTTCGCCTACCTACTGTTCGTGTCCGTCAAG
CTCACTTACCTCGGCAGCGCTGGGCCCGCGCCTGCCGTCGGCCGCCTGGCCACCACCGGC
GCGGGCGAGCCAGCTGCGCGCGCGCGCTCGAGCGGCGGCGGGGCCGTGTCCGGGTACGGC
CGCATCACCGGCGAGATCCTCCGGCGGCACGAAGCCTTCGAGGAGCGGCGGAAGCGGTGG
GGGCAGCTGGGGAACTTCACGGAGCTCGAGCGCGTGGCGGCCGAAGCGTGGGCGCTCGGG
GCCGCCGCGTGGGAGGAGGCCTCTGCGTTCGACGGCGACGTCGACTACATCGCCTCCCGC
GACGTCGCCGGGGAGGGCACGGCCAAGTGCCCAGGCTCGCTCGCGCTCGGCGCCGGGGAG
ACCACGGCGTTCCTGCCGTGCGGGCTGGCCGCCGGGTCGGCAGTTACCGTGGTTGGGACA
GCGCGGACGGCGCGGCCGGAGTACGTCGAGGCGCTGGAGCGGAGCGGCACGGGCAACGGG
ACGGTGCTGGTGGCGCAGTTCGCGGTGGAGCTGCGCGGCCTGCGCGCTACCGACGGCGAG
GAGCCGCCTAGGATACTGCACCTCAACCCGCGCCTGCGCGGCGACTGGAGCAGCCGCCCC
GTGCTAGAGATGAACACCTGCTTCCGAATGCAGTGGGGCAGGGCACAGCGCTGCGACAGT
ACCCCTTCCGGAGACGATGACCTGGAACCTGGATTCGCCCTCGAAGACGCAACAGGTTTA
GCCGTGACAGGGGGCATAGATGTTCACTCTGTGTACGCAACAGCGCTTCCAAAGGCACAT
CCTAGCTTTTCTCTCCAGCAAGTCTTGGAAATGTCTGAAAGGTGGAAGGCTCGCCCTGTG
CCAGAGGAACCAATCCATCTTTTCATCGGCATCCTCTCCGCCACAAACCATTTCGCCGAG
CGCATGGCTATTAGGAAAACTTGGATGCAGTTTCCGGCTATCCAATCGGGGAATGCGGTT
GCTCGGTTCTTTGTTGCGCTGAGCCACAGAAAGGAGATAAATGCAGCACTGAAGAAGGAA
GCAGAGTATTTTGGAGACATAGTCATTCTGCCGTTCATCGACCGGTATGAGCTAGTGGTT
CTGAAAACGGTTGCGATATGTCAATACGGGGTGCACAATGTCACTGCAGATTACATCATG
AAGTGCGACGATGACACCTTTGTGCGGCTGGATATAGTACTGCACCAAATCAGTACCTAC
AACAAAACCTCACCTCTGTATCTGGGCAACCTGAATCTCTTGCACAGGCCTCTAAGAAGG
GGCAAATGGGCCGTCACCTACGAGGAATGGCCAGAAGCGGTGTATCCCCCGTACGCCAAT
GGACCTGGGTACGTTATCTCGGCCGGCATTGCGAGAGACGTAGCATCCCGGCATACAAAC
CACTCCCTACGGCTGTTCAAGATGGAGGACGTGAGCATGGGCATGTGGGTGGAGGACTAC
AACGCCAGCGCCCCCGTGCAGTATGTCCACAGCTGGAGGTTCTGCCAGTTCGGCTGCGTG
GACAACTACTTCACGGCGCACTACCAGTCCCCCAGGCAGATGCTGTGCCTCTGGGAGAAG
CTGTCAGCGGGGAGAGCGCACTGCTGTAACTACAGATAA

Peptide Sequence

PEP ID

Zm00001d041504_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:124540297:124543804:1 gene:Zm00001d041504 transcript:Zm00001d041504_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase GALT2
Sequence

MKRARSSEVFIGVGRLRARRGLAPLLAAAAFAYLLFVSVKLTYLGSAGPAPAVGRLATTG
AGEPAARARSSGGGAVSGYGRITGEILRRHEAFEERRKRWGQLGNFTELERVAAEAWALG
AAAWEEASAFDGDVDYIASRDVAGEGTAKCPGSLALGAGETTAFLPCGLAAGSAVTVVGT
ARTARPEYVEALERSGTGNGTVLVAQFAVELRGLRATDGEEPPRILHLNPRLRGDWSSRP
VLEMNTCFRMQWGRAQRCDSTPSGDDDLEPGFALEDATGLAVTGGIDVHSVYATALPKAH
PSFSLQQVLEMSERWKARPVPEEPIHLFIGILSATNHFAERMAIRKTWMQFPAIQSGNAV
ARFFVALSHRKEINAALKKEAEYFGDIVILPFIDRYELVVLKTVAICQYGVHNVTADYIM
KCDDDTFVRLDIVLHQISTYNKTSPLYLGNLNLLHRPLRRGKWAVTYEEWPEAVYPPYAN
GPGYVISAGIARDVASRHTNHSLRLFKMEDVSMGMWVEDYNASAPVQYVHSWRFCQFGCV
DNYFTAHYQSPRQMLCLWEKLSAGRAHCCNYR

Transcript Sequence

Transcript ID

Zm00001d041504_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:124540297:124543804:1 gene:Zm00001d041504 gene_biotype:protein_coding transcript_biotype:protein_coding description:Hydroxyproline O-galactosyltransferase GALT2
Sequence

AACCCGTCACTTTCCCTTCTGTCTGGCTCCGCATCCCAGTCCCAGACCCGGCAAGCGCCG
GCCATCGCCATTTCGGATCCGGGCCCGCTCAGCGCGCGGGTTCCCGAACCCGGCCGGCCG
GCCGCGCTCCTCGCCACCGCCGCCGCCGGCCATGAAGCGCGCGCGCAGCTCCGAGGTATT
CATCGGCGTAGGCCGGCTGCGCGCACGCAGGGGCCTGGCGCCGCTTCTCGCAGCGGCGGC
TTTCGCCTACCTACTGTTCGTGTCCGTCAAGCTCACTTACCTCGGCAGCGCTGGGCCCGC
GCCTGCCGTCGGCCGCCTGGCCACCACCGGCGCGGGCGAGCCAGCTGCGCGCGCGCGCTC
GAGCGGCGGCGGGGCCGTGTCCGGGTACGGCCGCATCACCGGCGAGATCCTCCGGCGGCA
CGAAGCCTTCGAGGAGCGGCGGAAGCGGTGGGGGCAGCTGGGGAACTTCACGGAGCTCGA
GCGCGTGGCGGCCGAAGCGTGGGCGCTCGGGGCCGCCGCGTGGGAGGAGGCCTCTGCGTT
CGACGGCGACGTCGACTACATCGCCTCCCGCGACGTCGCCGGGGAGGGCACGGCCAAGTG
CCCAGGCTCGCTCGCGCTCGGCGCCGGGGAGACCACGGCGTTCCTGCCGTGCGGGCTGGC
CGCCGGGTCGGCAGTTACCGTGGTTGGGACAGCGCGGACGGCGCGGCCGGAGTACGTCGA
GGCGCTGGAGCGGAGCGGCACGGGCAACGGGACGGTGCTGGTGGCGCAGTTCGCGGTGGA
GCTGCGCGGCCTGCGCGCTACCGACGGCGAGGAGCCGCCTAGGATACTGCACCTCAACCC
GCGCCTGCGCGGCGACTGGAGCAGCCGCCCCGTGCTAGAGATGAACACCTGCTTCCGAAT
GCAGTGGGGCAGGGCACAGCGCTGCGACAGTACCCCTTCCGGAGACGATGACCTGGAACC
TGGATTCGCCCTCGAAGACGCAACAGGTTTAGCCGTGACAGGGGGCATAGATGTTCACTC
TGTGTACGCAACAGCGCTTCCAAAGGCACATCCTAGCTTTTCTCTCCAGCAAGTCTTGGA
AATGTCTGAAAGGTGGAAGGCTCGCCCTGTGCCAGAGGAACCAATCCATCTTTTCATCGG
CATCCTCTCCGCCACAAACCATTTCGCCGAGCGCATGGCTATTAGGAAAACTTGGATGCA
GTTTCCGGCTATCCAATCGGGGAATGCGGTTGCTCGGTTCTTTGTTGCGCTGAGCCACAG
AAAGGAGATAAATGCAGCACTGAAGAAGGAAGCAGAGTATTTTGGAGACATAGTCATTCT
GCCGTTCATCGACCGGTATGAGCTAGTGGTTCTGAAAACGGTTGCGATATGTCAATACGG
GGTGCACAATGTCACTGCAGATTACATCATGAAGTGCGACGATGACACCTTTGTGCGGCT
GGATATAGTACTGCACCAAATCAGTACCTACAACAAAACCTCACCTCTGTATCTGGGCAA
CCTGAATCTCTTGCACAGGCCTCTAAGAAGGGGCAAATGGGCCGTCACCTACGAGGAATG
GCCAGAAGCGGTGTATCCCCCGTACGCCAATGGACCTGGGTACGTTATCTCGGCCGGCAT
TGCGAGAGACGTAGCATCCCGGCATACAAACCACTCCCTACGGCTGTTCAAGATGGAGGA
CGTGAGCATGGGCATGTGGGTGGAGGACTACAACGCCAGCGCCCCCGTGCAGTATGTCCA
CAGCTGGAGGTTCTGCCAGTTCGGCTGCGTGGACAACTACTTCACGGCGCACTACCAGTC
CCCCAGGCAGATGCTGTGCCTCTGGGAGAAGCTGTCAGCGGGGAGAGCGCACTGCTGTAA
CTACAGATAACACGAGGCCCCCAGCCCCCAGGGGGGAAATGGTGACCTAGCCGCCTAGGT
GCATCAAGGCTCATGACCTTCGTTCCATTCGCCTGGCTTCGGTGGTTCGGTTCCATACGA
CCATCTGCTCAGATGACTAATGCCAGAAACCATGATCTCGACACCGCATGTTCTTTGGTT
CTTAGATTGAAGGTATACGGGATAAGGGTGTTACCAACTGCTGCTTCATCTTCAATTCTT
CACTGAGGTGAATGCTGGCATGAGGATAGAAGGGGAGGGGGCGTGAATTCACATTGGCTG
TTTGTACAGGCCGCCGGCCTATTTGTAGAACTGCAAATCCGTACCCACTGGAACGGGAAA
TTGTCTCCCCTGTGTGGCTGTGTATGCAGATCTGTGTGTACTATTCGTGCGAATCGGTGG
TGTATGTGTATTTGACATCCAACAAAGTTAACTTAGACGGCA