Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041475_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:122403802:122410495:1 gene:Zm00001d041475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Septin and tuftelin-interacting protein 1 homolog 1
Sequence

ATGCCCACCCAGGAGCCCGAGCCTGAGGAGAGGCCGGGGCTCGGGCGCGCCGCCGCCGCT
GCTGCCGATAAGGAGGAGGAGGAGGAGGAGGAGGATCAGGACGATGAGGGGGACACCGAG
ATGCTGCCGGCGATGTTCGGCAAGATCAGGGACGGCGCGCGCGCGAGGCGGGAGGAGAAG
GAGCGGGAGCGGGAGATGGCGGCCCGTCGGCGACAGGCAGCGGGTCTCGGGGCCGGGGAG
CCATCCGCCGCTCCTGGGAGCCTGGAGTCCAACTCCAAGGTGGCCAAGATGATGCGGATG
ATGGGGTACAAGAAAGGCATGGGCCTTGGCAAGAATCAGCAGGGGATCACTGCGCCGGTT
GAGTCCACTCTGCGACCCAAGAACGCTGGCCTGGGGAGCGTTGAGGGGTTCAGGGAGCCC
AAGATCATGTCTGCTAAGGAGAATGTGCCAGCCCCACCACCTCCACCGGCATCAGCGAAG
AAGAAGCGTTGGTCCAAGAAGGCTACCACAAAGAAGGCTCCAATCTTGACGAAAAATGAG
CTCCTGGCTATGCGTGCTGAGCAGGAACAGGAGGAACAGCCCGCTGTTGTCCAGAAGGTG
ATTGACATGCGAGGGCCACAGGCGCGGGTGCTGACAGACTTGAAGGGTCTCAATGAAGAA
CAAGAGATGGAGGCGAATGACGTGCCCATGCCAGAGCTGCAGTACAATGTCCGCATGCTT
GTTGATGAGGCTAGGGCTGATATTGTGAGGTTGGACGCCCAGCTGCGGCGGGAGCAGGAG
AAGGTGGCTAGCTTGGTGCGGGAGAAGGAAAAAGTGGCTAAGCAAGAGGCATCGCAGAAA
CGCCAGTTGCTTGTGATGGAGAGAATTGCAGAGACACTGGAGAAGGTCCAGGACGATGAT
GCATCCGGCATGCTCACTCTGGATGGGTTGATTCAGACATTCCACGGATTGAAGGTGCAG
TTTGAGGAGGAGTTCAAGATGTGTAGCATCGCATGGATTGCTTGCAGATACGCTCATCCG
CTCCTAATCCGCGTCTTCCAGGGGTGGCAGCCCCTGCATGATCCAAAATTTGGGTTAGAA
GTCATGAAAAAATGGAAGGACCTGCTGCAGGGGGACCAACCATATGACTTCTCAGATAGT
GCCGCATCAATGACACCATATGTGCAGCTTGTTAGTGAAGTCATCCTACCGGCTGTGAGG
ATATCAGGAACCAATTCGTGGGAGGCTAGGGAACCGGAACCAATGCTCCACTTTCTTGAG
TTATGGGATAATAAGAAGTTGCTGCCGCCTGTTTTGCTTCAATCATTACTAGAGCATGTG
ATCATGCCAAAGCTCTCAGCTGCCGTGGATTCTTGGGATCCTCGCAGGGAAAGCATACCG
ATCCATGTCTGGGTGCATCCATGGCTGCCAATGCTAAGGGAAAGGATAGAGACCTTGTGC
CATTCTATTCGATACAAGTTGAGCACTGTCCTCCATGTATGGCAAGCACATGATGCTTCA
GCATATGCAGTGTTGTCTCCGTGGAAAGACGTGTTTGATTCGGCAAGCTGGGAAGACCTG
ATTGTGCGGTATATCATTCCTAAACTGAGATTGGCGTTGCAAGACTTTCAGATCAACCCA
GCAAACCAGAAGCTCGATCAGTTCAACTGGGTGATGTTGTGGACATCTGCAATCCCAGTA
CAGCTCATGGTCCATATGTTGGAAGTCGATTTCTTCAGCAAGTGGCAGCAGGTTCTTTAC
CACTGGTTGTGCTCACCAAATCCTGATTTCAATGAGATAATGAACTGGTATAAGGGATGG
AAGGGCCTTTTCCCACCAGAGTTACTTGCCAATGAGCGCATACGGATGCTTCTAACTGCT
GGTCTTGACATGATGAACCAAGCTGCTGAAGGACTTGAGGTGGTGCAACCTGGGGCTAGG
GAGAATGTGGGCTACTTGAGGGCAACGGAGAAGCGACAATTTGATGCAGCACAGCAAGCT
TACCATGCTGTGCCAGGAGCAGCCATGGCGGATTTGAGCTTCAAGGAGTCTATACAGGCA
TATGCAATGGAACAAGGTTTGCTATTTATGCCTAGAGTTGGCAAGTTCTATAATGGCATG
CCAGTGTATGAGTTCGGCACAGTTAGTATTTGCATAGACTCTGTGAAGCGACTACTCTAT
GCACAACTTCAAGAGGGAATCGACAGATGGAGTCCTGTAACTCTTACACAATTGATGGAC
ATGAACCGAATTGGAAGACCACACTAG

Peptide Sequence

PEP ID

Zm00001d041475_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:122403802:122410495:1 gene:Zm00001d041475 transcript:Zm00001d041475_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Septin and tuftelin-interacting protein 1 homolog 1
Sequence

MPTQEPEPEERPGLGRAAAAAADKEEEEEEEDQDDEGDTEMLPAMFGKIRDGARARREEK
EREREMAARRRQAAGLGAGEPSAAPGSLESNSKVAKMMRMMGYKKGMGLGKNQQGITAPV
ESTLRPKNAGLGSVEGFREPKIMSAKENVPAPPPPPASAKKKRWSKKATTKKAPILTKNE
LLAMRAEQEQEEQPAVVQKVIDMRGPQARVLTDLKGLNEEQEMEANDVPMPELQYNVRML
VDEARADIVRLDAQLRREQEKVASLVREKEKVAKQEASQKRQLLVMERIAETLEKVQDDD
ASGMLTLDGLIQTFHGLKVQFEEEFKMCSIAWIACRYAHPLLIRVFQGWQPLHDPKFGLE
VMKKWKDLLQGDQPYDFSDSAASMTPYVQLVSEVILPAVRISGTNSWEAREPEPMLHFLE
LWDNKKLLPPVLLQSLLEHVIMPKLSAAVDSWDPRRESIPIHVWVHPWLPMLRERIETLC
HSIRYKLSTVLHVWQAHDASAYAVLSPWKDVFDSASWEDLIVRYIIPKLRLALQDFQINP
ANQKLDQFNWVMLWTSAIPVQLMVHMLEVDFFSKWQQVLYHWLCSPNPDFNEIMNWYKGW
KGLFPPELLANERIRMLLTAGLDMMNQAAEGLEVVQPGARENVGYLRATEKRQFDAAQQA
YHAVPGAAMADLSFKESIQAYAMEQGLLFMPRVGKFYNGMPVYEFGTVSICIDSVKRLLY
AQLQEGIDRWSPVTLTQLMDMNRIGRPH

Transcript Sequence

Transcript ID

Zm00001d041475_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:122403802:122410495:1 gene:Zm00001d041475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Septin and tuftelin-interacting protein 1 homolog 1
Sequence

GGGCGCCGCAGACCCGGGATGACGCCATCTACGGGGTCTTCGCGGAGGGCGACTCCGACT
ACGATTCGGAGGACGACGAAGGTACCCGCCGCCGCCGCCGGAAGCGCCGCAAGGACGGCG
GCGGGGAGGCCGACCTCACCAAGCCCGTCCAGTTCGTCTCCACCGGTAAGTTCATGCCCA
CCCAGGAGCCCGAGCCTGAGGAGAGGCCGGGGCTCGGGCGCGCCGCCGCCGCTGCTGCCG
ATAAGGAGGAGGAGGAGGAGGAGGAGGATCAGGACGATGAGGGGGACACCGAGATGCTGC
CGGCGATGTTCGGCAAGATCAGGGACGGCGCGCGCGCGAGGCGGGAGGAGAAGGAGCGGG
AGCGGGAGATGGCGGCCCGTCGGCGACAGGCAGCGGGTCTCGGGGCCGGGGAGCCATCCG
CCGCTCCTGGGAGCCTGGAGTCCAACTCCAAGGTGGCCAAGATGATGCGGATGATGGGGT
ACAAGAAAGGCATGGGCCTTGGCAAGAATCAGCAGGGGATCACTGCGCCGGTTGAGTCCA
CTCTGCGACCCAAGAACGCTGGCCTGGGGAGCGTTGAGGGGTTCAGGGAGCCCAAGATCA
TGTCTGCTAAGGAGAATGTGCCAGCCCCACCACCTCCACCGGCATCAGCGAAGAAGAAGC
GTTGGTCCAAGAAGGCTACCACAAAGAAGGCTCCAATCTTGACGAAAAATGAGCTCCTGG
CTATGCGTGCTGAGCAGGAACAGGAGGAACAGCCCGCTGTTGTCCAGAAGGTGATTGACA
TGCGAGGGCCACAGGCGCGGGTGCTGACAGACTTGAAGGGTCTCAATGAAGAACAAGAGA
TGGAGGCGAATGACGTGCCCATGCCAGAGCTGCAGTACAATGTCCGCATGCTTGTTGATG
AGGCTAGGGCTGATATTGTGAGGTTGGACGCCCAGCTGCGGCGGGAGCAGGAGAAGGTGG
CTAGCTTGGTGCGGGAGAAGGAAAAAGTGGCTAAGCAAGAGGCATCGCAGAAACGCCAGT
TGCTTGTGATGGAGAGAATTGCAGAGACACTGGAGAAGGTCCAGGACGATGATGCATCCG
GCATGCTCACTCTGGATGGGTTGATTCAGACATTCCACGGATTGAAGGTGCAGTTTGAGG
AGGAGTTCAAGATGTGTAGCATCGCATGGATTGCTTGCAGATACGCTCATCCGCTCCTAA
TCCGCGTCTTCCAGGGGTGGCAGCCCCTGCATGATCCAAAATTTGGGTTAGAAGTCATGA
AAAAATGGAAGGACCTGCTGCAGGGGGACCAACCATATGACTTCTCAGATAGTGCCGCAT
CAATGACACCATATGTGCAGCTTGTTAGTGAAGTCATCCTACCGGCTGTGAGGATATCAG
GAACCAATTCGTGGGAGGCTAGGGAACCGGAACCAATGCTCCACTTTCTTGAGTTATGGG
ATAATAAGAAGTTGCTGCCGCCTGTTTTGCTTCAATCATTACTAGAGCATGTGATCATGC
CAAAGCTCTCAGCTGCCGTGGATTCTTGGGATCCTCGCAGGGAAAGCATACCGATCCATG
TCTGGGTGCATCCATGGCTGCCAATGCTAAGGGAAAGGATAGAGACCTTGTGCCATTCTA
TTCGATACAAGTTGAGCACTGTCCTCCATGTATGGCAAGCACATGATGCTTCAGCATATG
CAGTGTTGTCTCCGTGGAAAGACGTGTTTGATTCGGCAAGCTGGGAAGACCTGATTGTGC
GGTATATCATTCCTAAACTGAGATTGGCGTTGCAAGACTTTCAGATCAACCCAGCAAACC
AGAAGCTCGATCAGTTCAACTGGGTGATGTTGTGGACATCTGCAATCCCAGTACAGCTCA
TGGTCCATATGTTGGAAGTCGATTTCTTCAGCAAGTGGCAGCAGGTTCTTTACCACTGGT
TGTGCTCACCAAATCCTGATTTCAATGAGATAATGAACTGGTATAAGGGATGGAAGGGCC
TTTTCCCACCAGAGTTACTTGCCAATGAGCGCATACGGATGCTTCTAACTGCTGGTCTTG
ACATGATGAACCAAGCTGCTGAAGGACTTGAGGTGGTGCAACCTGGGGCTAGGGAGAATG
TGGGCTACTTGAGGGCAACGGAGAAGCGACAATTTGATGCAGCACAGCAAGCTTACCATG
CTGTGCCAGGAGCAGCCATGGCGGATTTGAGCTTCAAGGAGTCTATACAGGCATATGCAA
TGGAACAAGGTTTGCTATTTATGCCTAGAGTTGGCAAGTTCTATAATGGCATGCCAGTGT
ATGAGTTCGGCACAGTTAGTATTTGCATAGACTCTGTGAAGCGACTACTCTATGCACAAC
TTCAAGAGGGAATCGACAGATGGAGTCCTGTAACTCTTACACAATTGATGGACATGAACC
GAATTGGAAGACCACACTAGTAGATCGCTCCTAGCCTTTGACTTGCATGATGTTTTTACT
TTCTTCCCTGTTGTGTAAAACTTTTCAGAGATGTCAATTCATTAGCTCTTTTGAACAATA
TCTCCGTTAAAGAAGAAAGGGGTTAGATCTATATCTAAATGTGCTGGATAATGTTGTATG
TCTCATTGTGCTGCTGGTATTTACGGTGGTGCTGTCAATATGACGTGGCTCTTTGGTAAT
TTTGATCCGTAAGATCTGTTGTAACTGCTGAAGGACTTATGCTTTATGCAGTTGCTGGCA
ATCCTAATTAACCTGAACACTTCTGGTTGTACACTGAAATGCTTTTGTGGTTATAGGTCC
CGAGTTCGATCCCCTCGGGGGCAAATTTCGGGGTTTGGTTAAAAAAATCTCCACGTTGTG
GCCCACCCGCTCTCGATGGTCGATATCCTGCGCGCCACCCTTCGGTTGGGCCGTTGCAGA
TTGGACAGTTGACTCGGCCTGTTAATGATGGGAGGCCAAGGTTCAGGAGTTTTCTCGGCC
GCGACCATATTTCACTCTCTTCTCTACTACTCCTTAAGAGGGTAAGGAGGGCGTCCACCA
CCTTCACCACGGCTCTCCCCTGCTAATCTCGCCGGCCGCCCTGTCCCAGCATTCCCCGCT
CTCCCCCACCTGCAATCCCACGCCCGCGTCGTCGATGGCTCGCGTCTAGGAAATCTCGTG
TCCACACTCCATGCCCTCGCCTCCCCCACGCGCCCTCGCGTTGACCGCCCGTCACCGCCA
CCACGTCTATCAAGCTGACACCGACGCCGCCGCACCCCCTCCCCCGCGTGCGTAGCCCCC
TGCCACCGGGGCTCGCACTGACCGGAGGTCCATGCCCACCCCCTCGGAGATTGCTCCCTC
CCTGAGGAGCTGGAGGCGGCGGTGTGGGGACAAGGAGGCCACCGAGGATGCCGCGCGGGG
GCTGCGGTAAGAGCTTGACGTCGAGTGGGCCTCCATAGAGACGACACCCAGATCCGACCA
TTGAGTCCCTCGACGCCGCTGCTTACTCCTCCATCGCCGCGGTGACCTCCTCGGGCTCGA
TGGCGCTGCCATCATCTTACTCCTCCGTCACCCGTGGTTAGCGCGTGGGTTTGAGTTCCG
ACATTTCCTTGCGAATTCGGGGGTGATTTGGGGCCCCTATATGGCGAGGATTTGAGTGGA
TTCGAGAGGAACAAGTGGAGGTCGGCGGCACGGCCATCACAAGCCTCCTGGTCCTGGACC
CCTACTTCCGAGGAAAGAAGCCGAGGGGAGACTACGGGACGGCGAGCGCAGAAGGCGGGC
TAGACGACGGTGCTGCCATCACGGGCCTCCTACTCCTGTACCCATACTTCTAGGGGAAGA
AGCCAGTGGCCGGGAGACAACAGACCAGCGCGAGGCGACGACAGTACGAGGCACGCCACC
CAGCCCGCAGAGAGTTTTGCTGTGGAAATCTCCAACTCTGCGTTCGTCTGAAATATCGGC
AGCACCATTTGTCGGCACCTGGATACTAGGCAAAGTTATCTGGATCCTTCACATGCATGG
GCTAGGAAGGGCATCAGTTTGTCCCATGCTCCCATGGTTGGAATAAATAAATACTGGGTC
ATCTGCACACCAACAGGGTCTACGACAATGTCTGGACCTTCATTCTAACAGATGCAACCT
TCAAGAGCGCTGAGATTCAAGAAACACTGAGCAAGATGGGTCTCAATGCCGTGGTGGCCG
CCTGCTACGTCTTTCCATTACTTGTCTTTGTGCTCACAGTCCGCTTCTTCTACGTACTGT
GGCACAGTGGCCAACCAGAGTCAAGGTTGTGCGCCACCAGATTGCGTTGTCTCATTGTCC
TTGGCTCCGAAAAGGTCCAGATTACCAGCTCCGGGTGATGCTGATGAGCTATCTGTCATT
GAAGACCAAATTGCATGGATAGTTCACATAATTGCATCCATTGTCAAGTAAGGCAGGTAA
CAGGTGTTAGGTGAGCAATATATATTTTCTTTTATTTGTAAACTTTGTTCTTTTAAATGT
TGTTCTTGCTTGCATATGCGATTCAGGAAGAGCCCGTAGAGAGGTCGAGGAGCAGCACTG
GCTGTTTCTCTGGCATTGATCAAGGCGAGCACATCAAGGGGTCTCAGGCACCTCCCTCTC
ATTGGTGTCGTCGTTGAACCAGTTATGGTACATTGGAATGGCTGCAAATTGAGGGAGAAA
GACCTGGAAACAGTGATGCAGCATGTTCACACGAAGATGGCAACAATGGTAACATTTGCA
TTGGTCCTGTAAATAAGGTATTGAATATGCTTGCTTGATGGATTGAAGATCCAAATTCGA
ATATAACTTCATAAGTTCATATCCCACGAGTCTAATTACTTGTGGCTTGCTGAAGATGGC
ATGAAGATGCAGGTGATTATTGCTTGTTCTGTGGCTTATTTCCTTTTACTTAGTTAACTT
CCTATTAGGCAGCTACTGCACCAGCAAACCTGTCAACATAGAGAGAGGCTTGTTCTGTAA
AACTACTAATCCAGGACTCGTGAGAACAAGAAAGCAAGGATGCCATGGATACAATATTTG
TGTGGCAACAATATTAGACATTGTACTCTTTTCTTTTCAAATTATAACCATTCTCTTCTT
TTTAAATTATAAGTCGTTCCAATATTTTTAGATATATAACAAAAACTATACATTTGAATA
GTATGTCTAGAGCATGTATACTTGAGTGACCAATGAGCATTGAATTTTACTGCATATGAT
GGATT