Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041420_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:3:118461098:118469995:-1 gene:Zm00001d041420 gene_biotype:protein_coding transcript_biotype:protein_coding description:H+-translocating pyrophosphatase

Sequence

ATGATACTTGGAGGAACAATGGCACAGCGCTGTAAAATTGAGGATCCGTCTGGCTTTATT
TTGTTTCCTCTTGTTGTGCATTCATTTGATTTGGTGGTGTCATCAGTCGGAATTCTCTCA
ATCAGAGGAACACGTGACTCTGGGCTCATTTCCCCTATCGAAGATCCCATGGCAATTATG
CAAAAAGGCTACTCTGTTACTATTATGCTTGCTGTTCTTACATTTGGAGTGTCTACTCGT
TGGCTCCTGTACACGGAACAAGCACCTTCTGCATGGCTAAATTTTGCATTGTGTGGCTTG
GTGGGGATCATCACAGCATATGCTTTTGTTTGGATTTCGAAGTATTACACGGATTATAAA
CACGAGCCGGTCCGCCTTTTAGCTCTTTCAAGTTCTACAGGACATGGAACTAATATTATT
GCTGGAGTAAGTTTGGGGATGGAATCAACAGCCCTACCAGTTCTAGTGATAAGTGTTGCC
ATTATATCATCCTATTGGCTGGGGCAGACCTCTGGCTTGGTGGACGAGTCTGGCAACCCA
ACTGGTGGTCTTTTTGGGACAGCTGTAGCGACAATGGGGATGCTTAGCACAGCAGGGTAT
GTTCTCACCATGGACATGTTTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATG
AGCCAGCAGCATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACA
ACTAAAGCTACTACAAAAGGATTTGCCATAGGATCAGCAGCACTGGCATCATTCCTCCTG
TTTAGTGCATACATGGACGAAGTAGCTTCTTTTGCTCAAATGCCGTTCAAGGAGGTTGAC
ATAGCAGTCCCGGAGATTTTTGTTGGTGGTTTATTAGGCTCGATGCTTATATTCCTGTTT
AGTGCATGGGCTTGTTCAGCAGTTGGCAAAACTGCACAGGAAGTTGTTAATGAGGTCAGG
AGACAATTTATCGAGAGGCCTGGTATTATGGACTACAAAGAGAAGCCCGATTATGGACGC
TGTGTCGCAATTGTGGCCTCTGCATCCTTAAGAGAAATGATAAAACCTGGGGCTCTAGCA
ATTATATCACCCATGGCCGTTGGCGTTGTCTTCCGGATTTTGGGCCACTCCACTGGTCAG
CCTCTTCTTGGAGCTAAAGTTGTAGCCTCCATGCTTATGTTTGCGACGGTTGCTGGTATT
CTTATGGCACTCTTCTTGAACACTGCTGGCGGCGCCTGGGATAATGCAAAGAAGTACATT
GAGACTGGTGCCCTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGAC
ACGTAA

Peptide Sequence

PEP ID

Zm00001d041420_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:3:118461098:118469995:-1 gene:Zm00001d041420 transcript:Zm00001d041420_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:H+-translocating pyrophosphatase

Sequence

MILGGTMAQRCKIEDPSGFILFPLVVHSFDLVVSSVGILSIRGTRDSGLISPIEDPMAIM
QKGYSVTIMLAVLTFGVSTRWLLYTEQAPSAWLNFALCGLVGIITAYAFVWISKYYTDYK
HEPVRLLALSSSTGHGTNIIAGVSLGMESTALPVLVISVAIISSYWLGQTSGLVDESGNP
TGGLFGTAVATMGMLSTAGYVLTMDMFGPIADNAGGIVEMSQQHESVREITDVLDAVGNT
TKATTKGFAIGSAALASFLLFSAYMDEVASFAQMPFKEVDIAVPEIFVGGLLGSMLIFLF
SAWACSAVGKTAQEVVNEVRRQFIERPGIMDYKEKPDYGRCVAIVASASLREMIKPGALA
IISPMAVGVVFRILGHSTGQPLLGAKVVASMLMFATVAGILMALFLNTAGGAWDNAKKYI
ETGALGGKGSESHKAAVTGDT

Transcript Sequence

Transcript ID

Zm00001d041420_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:118461098:118469995:-1 gene:Zm00001d041420 gene_biotype:protein_coding transcript_biotype:protein_coding description:H+-translocating pyrophosphatase

Sequence

ACCTAGCTTCGTGCTAATATCATCTTGTAGACTTGACGGCAAAAGGACCCTTTGAATCAA
AGAGAAGTTCGTCACTGAGGCTGAAGAAAATCTGGATGTGTTTACCTTTCAGGGCTTACT
AATTTTGAGAGGTGTCTGACATAGACTAAAAAAAAATCAGCGCCAGGGCTCAGGGAGCGA
CCTACCCCAAGGTGGGGAGTTGGTTCCTTTTCCAGTAATAATGAGGGCAAATTCATATCC
CATCATGATGGAAGAGGACATGGAAAATGGAAGGTCGTATCAAGAAAGACCAAGGGCTTT
TTCAACAGTACGAAGCAAATCATCTGTACCGCTGGCCTTCCGTTTGTTGATGAGGGTAAA
TCCCCGTGCCGTGATTATTCTTTCTCTTTTGGTCTTCAGTGGTGTTTTGTATGTGGGAGC
TAGTACATCACCAATTCTGGTCTTTGTGTTCTGTATATGTACTCTCAGTCTATTCTTCTC
TGTCTACCTTACAAAGTGGGTTCTTGCTAAGGACGAAGGACCTCCAGAAATGTCCGAGAT
ATCTGATGCCATAAGAGATGGCGCTGAAGGTTTTTTTAGGACACAATATGGAACTATTTC
TAAAATGGCATTTATTCTGGCCTTTGTCATCCTTGGCATTTATATTTTCCGCACTACCAC
CCCACAGCAGGAGGCATCTGGCTTGGGAAGGGCAACATTAGCCTATATTACAGTTGCCTC
TTTTCTCCTTGGAGCGTTATGTTCTGGAATAGCTGGTTTTGTTGGAATGTGGGTGTCCGT
ACGTGCAAATGTACGAGTTTCAAGTGCTGCTCGTCGCTCTGCAAGGGAATCATTGCAGAT
TGCCGTCCGTGCTGGTGGTTTCTCAGCCATTGTGGTTGTTTGCATGGCTGTATTTGGCGT
GGCAATACTGTACTCAACATTTTATGTTTGGCTTGGAGTAGATTCACCTGGGTCAATGAA
GGTTACCGACTGTAAGTTTCTTGTACACAATACACCTGAAAACACACTAGATTACAATCC
AACTTGTCCACCAATTATCTACTTATTTTATTGTTTTTGCAAATTGCAATACCATTTTGT
TATGTGAAAGGAACATTATTCTGCTGCTGATTCATATGTTTTTTTTGTGTGTAGTGCCTC
TTCTCCTTGTGGGATATGGTTTTGGTGCCTCTTTTGTTGCCCTTTTTGCTCAGTTGGGTG
GTGGAATATACACGAAAGCTGCTGATGTTGGAGCTGATCTGGTTGGAAAAGTTGAGCAGG
GAATACCAGAAGATGATCCTCGTAACCCAGCTGTCATTGCTGACTTGGTATTGATGTTCT
CAAGTAAAATTTGGAATGCTGTTTATTTTTAATTATTTTTCATTGAAGACTGATCAATTA
TGTTCAAATTACCTGTTATTAGCGATGAAGATCAGCATTGCTGTGCTTCTCAAAATTTAG
TGGGGATAAATTGATGTTAATAGCTTGCTTCTGTTTTGAAACTCACTGAACAATTATGTA
CTATGCTACTATATGTGCAAGAGTTGCCTTGTTGCCTAAGGTTTGGTAAAATTCTGAATC
ATAAACATTCTTGAGGACTGAATATTTCTTGTCTACGCTGCAATACTCAATACAATATTT
CTTTGCTCTACAACTTTACTTGCCTTGTTCTTGTTATCCTATAGTTCATCTTTTGCTACT
ATATATTCTTGTATAACAAAAGAAACTACTCAGGTTGGTGACAATGTTGGAGATTGTGCT
GCCCGAGGCGCTGATCTTTTTGAGAGCATAGCAGCAGAAATTATCAGTGCAATGATACTT
GGAGGAACAATGGCACAGCGCTGTAAAATTGAGGATCCGTCTGGCTTTATTTTGTTTCCT
CTTGTTGTGCATTCATTTGATTTGGTGGTGTCATCAGTCGGAATTCTCTCAATCAGAGGA
ACACGTGACTCTGGGCTCATTTCCCCTATCGAAGATCCCATGGCAATTATGCAAAAAGGC
TACTCTGTTACTATTATGCTTGCTGTTCTTACATTTGGAGTGTCTACTCGTTGGCTCCTG
TACACGGAACAAGCACCTTCTGCATGGCTAAATTTTGCATTGTGTGGCTTGGTGGGGATC
ATCACAGCATATGCTTTTGTTTGGATTTCGAAGTATTACACGGATTATAAACACGAGCCG
GTCCGCCTTTTAGCTCTTTCAAGTTCTACAGGACATGGAACTAATATTATTGCTGGAGTA
AGTTTGGGGATGGAATCAACAGCCCTACCAGTTCTAGTGATAAGTGTTGCCATTATATCA
TCCTATTGGCTGGGGCAGACCTCTGGCTTGGTGGACGAGTCTGGCAACCCAACTGGTGGT
CTTTTTGGGACAGCTGTAGCGACAATGGGGATGCTTAGCACAGCAGGGTATGTTCTCACC
ATGGACATGTTTGGTCCTATAGCTGACAATGCTGGTGGTATTGTTGAGATGAGCCAGCAG
CATGAAAGTGTGAGAGAAATCACAGATGTTCTAGATGCTGTGGGCAACACAACTAAAGCT
ACTACAAAAGGATTTGCCATAGGATCAGCAGCACTGGCATCATTCCTCCTGTTTAGTGCA
TACATGGACGAAGTAGCTTCTTTTGCTCAAATGCCGTTCAAGGAGGTTGACATAGCAGTC
CCGGAGATTTTTGTTGGTGGTTTATTAGGCTCGATGCTTATATTCCTGTTTAGTGCATGG
GCTTGTTCAGCAGTTGGCAAAACTGCACAGGAAGTTGTTAATGAGGTCAGGAGACAATTT
ATCGAGAGGCCTGGTATTATGGACTACAAAGAGAAGCCCGATTATGGACGCTGTGTCGCA
ATTGTGGCCTCTGCATCCTTAAGAGAAATGATAAAACCTGGGGCTCTAGCAATTATATCA
CCCATGGCCGTTGGCGTTGTCTTCCGGATTTTGGGCCACTCCACTGGTCAGCCTCTTCTT
GGAGCTAAAGTTGTAGCCTCCATGCTTATGTTTGCGACGGTTGCTGGTATTCTTATGGCA
CTCTTCTTGAACACTGCTGGCGGCGCCTGGGATAATGCAAAGAAGTACATTGAGACTGGT
GCCCTTGGTGGCAAAGGCAGTGAGTCCCATAAGGCTGCGGTTACAGGCGACACGTAAGTT
TCTAGTTTATGCTCTCCTTCGTGTCCTAATGACTTGGTTGGAGACCCATTCAAAGACACT
GCAGGACCATCGCTGCACGTTCTTATCAAGATGCTCGCCACGATCACACTGGTCATGGCT
CCCATATTCTTGTGATTAACCAACCAGATTTATCAAGCTTGCCATTAACCCTGCGGAGAT
GTATCTATGCGACTTGTAGATGAGGTGTTT