Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041343_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:113592188:113594266:1 gene:Zm00001d041343 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable disease resistance protein

Sequence

ATGAAGCTGTGGGAGCAGATCAGCGGCAACATGGTGCTCGGTGCATACAACCAGATCCCA
GAATGGCAGCTCAAGTTAGGACCAAGAGACCGAGGGCCTGTCCTTGTGATCCTTGACGAC
GTTTGGTCTCTCCCACAGCTCGAGGAGCTCACCTTCAGGTTCCCTGGGTGCAAGACTCTA
GTTGTATCGAGGTTCAAGTTCCCCACACTGGTAAAACAGACATACGAAATGCAGTTGCTA
GACGAGGCGGCGGCCTTGTCCGTCTTCTGCCGTGCCGCTTTCGATCAGGAGTGTGTTCCG
CGGACTGCTGACAAGAGATTGGTCAGGCAGGTCTCTGCAGAGTGCAGGGGCCTTCCACTG
GCTCTGAAGGTTATTGGTGCGTCATTGCGCGACCAGCCTCCTAAGATCTGGCTCAGCGCC
AAGAACCGGCTGTCTCGAGGAGAGGCTATTTCCGACTCCCATGAGACCAAGCTTCTAGAG
AGGATGGCGGCAAGTGTCGAGTGCTTGTCGGAGAAGGTCAGAGACTGCTTCCTTGATCTG
GGATGCTTCCCGGAGGACAAGAAGATCCCCCTTGATGTCTTGATCAACATCTGGATGGAG
GTTCATGATCTTGATGAACCAGATGCTTTCGCCATCTTGGTTGAGCTTTCGAACAAGAAC
CTTCTTACCCTCGTTAACGATGCACAGAACAAGGCTGGAGATTTGTACAGCAGCTACCAT
GACTACTCGGTGACACAGCATGATGTGCTGAGAGATCTTGCTCTTCACATGAGTGGGCGT
GACCCTCTGAACAAGCGTAGGCGGTTGGTGATGCCGAGAAGAGAAGAGACACTTCCAAAG
GACTGGCAGAGGAATAAGGATACCCCGTTTGAAGCTCAGATAGTTTCCATTCATACAGGT
GAAATGAAGGGATCTGACTGGTTCCAGATGAACTTCCCCAAGGCAGAAGTGCTCATCCTC
AACTTCGCCTCAAGCCTGTACTACCTCCCGCCGTTCATCGCGTCGATGCAGAACCTGAAA
GCCCTGGTGCTGATCAACTACGGCACCAGCAGCGCGGCCCTTGACAACCTATCCGCCTTC
ACCACGCTGAACGGCCTGAGGAGTCTCTGGCTGGAGAAGATCAGGCTCCCGCCGCTGCCG
AAGACCACCATCCCGCTGAAGAACCTGCACAAGATCTCGCTCGTCCTCTGCGAGCTGAAC
AGCAGCCTGAGAGGGTCGACGATGGACCTGTCCATGACATTCCCGCGCCTCTCCAACCTC
ACGATCGACCACTGCATAGACCTAAAGGAGCTGCCAGCAAGCATCTGCGAGATCGGCTCC
CTGGAGACCGTCTCCATCTCCAACTGCCACGACCTCACCGAGCTGCCATACGAGCTGGGC
AAGCTGCACTGCCTCAGCATCCTCCGGGTGTACGCCTGCCCGGCGCTGTGGCGGCTCCCG
GCGTCGGTGTGCAGCCTGAAGAGGCTCAAGTACCTCGACATATCCCAGTGCATCAACCTG
ACGGACCTCCCGGAGGAGCTCGGACACCTGACGAGCCTCGAGAAGATCGACATGCGGGAG
TGCTCGCGCCTGAGGAGCCTCCCGAGGTCGTCGTCCTCCCTCAAGTCCCTCGGCCACGTC
GTGTGCGACGAGGAGACGGCGCTGCTGTGGCGGGAGGCCGAGCAGGTCATCCCTGACCTC
CGGGTGCAGGTGGCCGAAGAGTGCTACAACCTGGACTGGCTAGCGGACTGA

Peptide Sequence

PEP ID

Zm00001d041343_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:113592188:113594266:1 gene:Zm00001d041343 transcript:Zm00001d041343_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable disease resistance protein

Sequence

MKLWEQISGNMVLGAYNQIPEWQLKLGPRDRGPVLVILDDVWSLPQLEELTFRFPGCKTL
VVSRFKFPTLVKQTYEMQLLDEAAALSVFCRAAFDQECVPRTADKRLVRQVSAECRGLPL
ALKVIGASLRDQPPKIWLSAKNRLSRGEAISDSHETKLLERMAASVECLSEKVRDCFLDL
GCFPEDKKIPLDVLINIWMEVHDLDEPDAFAILVELSNKNLLTLVNDAQNKAGDLYSSYH
DYSVTQHDVLRDLALHMSGRDPLNKRRRLVMPRREETLPKDWQRNKDTPFEAQIVSIHTG
EMKGSDWFQMNFPKAEVLILNFASSLYYLPPFIASMQNLKALVLINYGTSSAALDNLSAF
TTLNGLRSLWLEKIRLPPLPKTTIPLKNLHKISLVLCELNSSLRGSTMDLSMTFPRLSNL
TIDHCIDLKELPASICEIGSLETVSISNCHDLTELPYELGKLHCLSILRVYACPALWRLP
ASVCSLKRLKYLDISQCINLTDLPEELGHLTSLEKIDMRECSRLRSLPRSSSSLKSLGHV
VCDEETALLWREAEQVIPDLRVQVAEECYNLDWLAD

Transcript Sequence

Transcript ID

Zm00001d041343_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:113592188:113594266:1 gene:Zm00001d041343 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable disease resistance protein

Sequence

CAATCCGCAAACTTGGAGGCCATCAAGATGAAGCTGTGGGAGCAGATCAGCGGCAACATG
GTGCTCGGTGCATACAACCAGATCCCAGAATGGCAGCTCAAGTTAGGACCAAGAGACCGA
GGGCCTGTCCTTGTGATCCTTGACGACGTTTGGTCTCTCCCACAGCTCGAGGAGCTCACC
TTCAGGTTCCCTGGGTGCAAGACTCTAGTTGTATCGAGGTTCAAGTTCCCCACACTGGTA
AAACAGACATACGAAATGCAGTTGCTAGACGAGGCGGCGGCCTTGTCCGTCTTCTGCCGT
GCCGCTTTCGATCAGGAGTGTGTTCCGCGGACTGCTGACAAGAGATTGGTCAGGCAGGTC
TCTGCAGAGTGCAGGGGCCTTCCACTGGCTCTGAAGGTTATTGGTGCGTCATTGCGCGAC
CAGCCTCCTAAGATCTGGCTCAGCGCCAAGAACCGGCTGTCTCGAGGAGAGGCTATTTCC
GACTCCCATGAGACCAAGCTTCTAGAGAGGATGGCGGCAAGTGTCGAGTGCTTGTCGGAG
AAGGTCAGAGACTGCTTCCTTGATCTGGGATGCTTCCCGGAGGACAAGAAGATCCCCCTT
GATGTCTTGATCAACATCTGGATGGAGGTTCATGATCTTGATGAACCAGATGCTTTCGCC
ATCTTGGTTGAGCTTTCGAACAAGAACCTTCTTACCCTCGTTAACGATGCACAGAACAAG
GCTGGAGATTTGTACAGCAGCTACCATGACTACTCGGTGACACAGCATGATGTGCTGAGA
GATCTTGCTCTTCACATGAGTGGGCGTGACCCTCTGAACAAGCGTAGGCGGTTGGTGATG
CCGAGAAGAGAAGAGACACTTCCAAAGGACTGGCAGAGGAATAAGGATACCCCGTTTGAA
GCTCAGATAGTTTCCATTCATACAGGTGAAATGAAGGGATCTGACTGGTTCCAGATGAAC
TTCCCCAAGGCAGAAGTGCTCATCCTCAACTTCGCCTCAAGCCTGTACTACCTCCCGCCG
TTCATCGCGTCGATGCAGAACCTGAAAGCCCTGGTGCTGATCAACTACGGCACCAGCAGC
GCGGCCCTTGACAACCTATCCGCCTTCACCACGCTGAACGGCCTGAGGAGTCTCTGGCTG
GAGAAGATCAGGCTCCCGCCGCTGCCGAAGACCACCATCCCGCTGAAGAACCTGCACAAG
ATCTCGCTCGTCCTCTGCGAGCTGAACAGCAGCCTGAGAGGGTCGACGATGGACCTGTCC
ATGACATTCCCGCGCCTCTCCAACCTCACGATCGACCACTGCATAGACCTAAAGGAGCTG
CCAGCAAGCATCTGCGAGATCGGCTCCCTGGAGACCGTCTCCATCTCCAACTGCCACGAC
CTCACCGAGCTGCCATACGAGCTGGGCAAGCTGCACTGCCTCAGCATCCTCCGGGTGTAC
GCCTGCCCGGCGCTGTGGCGGCTCCCGGCGTCGGTGTGCAGCCTGAAGAGGCTCAAGTAC
CTCGACATATCCCAGTGCATCAACCTGACGGACCTCCCGGAGGAGCTCGGACACCTGACG
AGCCTCGAGAAGATCGACATGCGGGAGTGCTCGCGCCTGAGGAGCCTCCCGAGGTCGTCG
TCCTCCCTCAAGTCCCTCGGCCACGTCGTGTGCGACGAGGAGACGGCGCTGCTGTGGCGG
GAGGCCGAGCAGGTCATCCCTGACCTCCGGGTGCAGGTGGCCGAAGAGTGCTACAACCTG
GACTGGCTAGCGGACTGATGTCAGATTCTGGATGCTACCGCTTCCAAACTGACCATGTAC
ATATATGATGTTGCTTCCCCTGTGTAGTGCAGGGAAGAGAATCATCAATCCACTGGCCGA
TTTTGACATGTT