Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d041319_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:111919013:111920827:-1 gene:Zm00001d041319 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase3 description: nine-cis-epoxycarotenoid dioxygenase3
Sequence	ATGCAGGCCCTCACAGCGAGGTCCCCTGCTTCTTCGTCCTGCCCTTCCTCCTCCACCGTA CACCGCCGCGGCGGCACGCGCACGCGCAGCACCGCCCGCTTCGCCCCGCCCCGCGCCGCA GCGGCAGCGGCCAACTCGGTCTTCAGCGCGCCGCCCGCAGCCGTGCGCTACGCCGCGCCG CCCAAGCCGGCGGCGCCCATTGCGCCAGTGCCCGCTCCGGCGCCGGCGGCGGGCGGCGAG AAAGGCCTGAGCTTCCTGCAGCGCGCGGCGTCGGCGGCGCTGGACGCGTTCGAATCCGGC GTGATCGCGGGCCTCCTGGAGCGTCCCCGCGCGCTGCCCCGGTCGGCGGACCCGGCCGTG CAGATCGCCGGCAACTTCGCCCCCGTCGGCGAGCAGCCGCCCGTGCGGTCGCTGCCCGTG TCGGGCCGCATCCCGCCCTTCATCTCCGGCGTGTACGCGCGCAACGGCGCCAACCCCTGC TTCGACCCCGCCGCGGGGCACCACCTGTTCGACGGCGACGGCATGGTGCACGCGGTCCGC ATCCGCAACGGCGCCGCGGAGTCGTACGCGTGCCGCTTCACCGAGACGGCGCGGCTCCGG CAGGAGCGCGCCCTGGGGCGGGCCGTGTTCCCCAAGGCCATCGGCGAGCTGCACGGCCAC TCCGGGATCGCGCGCCTGGCGCTCTTCTACGCGCGCGGCCTCTGCGGCCTCGTCGACGCG TCCCGCGGCACGGGCGTCGCCAACGCCGGCCTCGTCTACTTCAACGGCCGCCTGCTGGCC ATGTCCGAGGACGACCTACCGTACCAGGTGCGCGTGACCGCCGACGGGGACCTCCGCACC GTCGGGCGCTACGACTTCGAAGGGCAGCTCGGGTGCGCCAGCATGATCGCGCACCCCAAG CTGGACCCGGCCTCCGGCGACCTCTTCGCGCTCAGCTACGACGTCATCCGGCGGCCCTAC CTGAGGTACTTCTACTTCCGGCCCGACGGCACCAAGTCCGACGACGTGGAGATCCCGCTG GAGCAGCCGACCATGATCCACGACTTCGCCATCACGGAGCGGTTCGTGGTGGTGCCCGAC CACCAGGTGGTGTTCAAGCTCGGCGAGATGCTCCGCGGCGGGTCCCCCGTGGTGCTGGAC CAGGGCAAGACGTCCCGCTTCGGCGTGCTGCCCAAGTACGCGCGCGACGCGTCGGAGATG GTGTGGGTGGACGTGCCGGACTGCTTCTGCTTCCACCTGTGGAACGCGTGGGAGGAGCCC GGCACGGGGGAGGTGGTGGTGGTCGGGTCCTGCATGACCCCCGCCGACTCCATCTTCAAC GACGACGGCGGCGAGGACGGGCGGCTCCAGAGCGTGCTGACCGAGATCCGGCTGGACACG CGCACGGGCGCGTCCACGCGCCGCGCCGTGCTGCCTCCGTCGGCGCAGGTGAACCTGGAG GTCGGGATGGTGAACCGCAACATGGTGGGGCGGAGGACGCGGTACGCGTACCTGGCCGTG GCGGAGCCGTGGCCCAAGGTGTCCGGGTTCGCCAAGGTGGACCTGGACACGGGCGACCTC GTCCGGTTCGACTACGGCGACGGCCGCTTCGGCGGGGAGCCCTGCTTCGTGCCCACCGAG GGCGCGCCGGCGCGCGGCGAGGACGACGGCTACATCCTGTCCCTCGTCCGCGACGAGCGG GCGGGCACGTCGGAGCTCCTGGTAGTGAACGCCGCCGACATGCGGCTGGAGGCCACGGTC CAGCTACCCTCCCGCGTGCCCTATGGCTTCCACGGCACCTTCATCGGCGAACGGGAGCTA GAGGCCCAGGCCTGA

Peptide Sequence

PEP ID	Zm00001d041319_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:111919013:111920827:-1 gene:Zm00001d041319 transcript:Zm00001d041319_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase3 description: nine-cis-epoxycarotenoid dioxygenase3
Sequence	MQALTARSPASSSCPSSSTVHRRGGTRTRSTARFAPPRAAAAAANSVFSAPPAAVRYAAP PKPAAPIAPVPAPAPAAGGEKGLSFLQRAASAALDAFESGVIAGLLERPRALPRSADPAV QIAGNFAPVGEQPPVRSLPVSGRIPPFISGVYARNGANPCFDPAAGHHLFDGDGMVHAVR IRNGAAESYACRFTETARLRQERALGRAVFPKAIGELHGHSGIARLALFYARGLCGLVDA SRGTGVANAGLVYFNGRLLAMSEDDLPYQVRVTADGDLRTVGRYDFEGQLGCASMIAHPK LDPASGDLFALSYDVIRRPYLRYFYFRPDGTKSDDVEIPLEQPTMIHDFAITERFVVVPD HQVVFKLGEMLRGGSPVVLDQGKTSRFGVLPKYARDASEMVWVDVPDCFCFHLWNAWEEP GTGEVVVVGSCMTPADSIFNDDGGEDGRLQSVLTEIRLDTRTGASTRRAVLPPSAQVNLE VGMVNRNMVGRRTRYAYLAVAEPWPKVSGFAKVDLDTGDLVRFDYGDGRFGGEPCFVPTE GAPARGEDDGYILSLVRDERAGTSELLVVNAADMRLEATVQLPSRVPYGFHGTFIGEREL EAQA

Transcript Sequence

Transcript ID	Zm00001d041319_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:111919013:111920827:-1 gene:Zm00001d041319 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:nine-cis-epoxycarotenoid dioxygenase3 description: nine-cis-epoxycarotenoid dioxygenase3
Sequence	ATGCAGGCCCTCACAGCGAGGTCCCCTGCTTCTTCGTCCTGCCCTTCCTCCTCCACCGTA CACCGCCGCGGCGGCACGCGCACGCGCAGCACCGCCCGCTTCGCCCCGCCCCGCGCCGCA GCGGCAGCGGCCAACTCGGTCTTCAGCGCGCCGCCCGCAGCCGTGCGCTACGCCGCGCCG CCCAAGCCGGCGGCGCCCATTGCGCCAGTGCCCGCTCCGGCGCCGGCGGCGGGCGGCGAG AAAGGCCTGAGCTTCCTGCAGCGCGCGGCGTCGGCGGCGCTGGACGCGTTCGAATCCGGC GTGATCGCGGGCCTCCTGGAGCGTCCCCGCGCGCTGCCCCGGTCGGCGGACCCGGCCGTG CAGATCGCCGGCAACTTCGCCCCCGTCGGCGAGCAGCCGCCCGTGCGGTCGCTGCCCGTG TCGGGCCGCATCCCGCCCTTCATCTCCGGCGTGTACGCGCGCAACGGCGCCAACCCCTGC TTCGACCCCGCCGCGGGGCACCACCTGTTCGACGGCGACGGCATGGTGCACGCGGTCCGC ATCCGCAACGGCGCCGCGGAGTCGTACGCGTGCCGCTTCACCGAGACGGCGCGGCTCCGG CAGGAGCGCGCCCTGGGGCGGGCCGTGTTCCCCAAGGCCATCGGCGAGCTGCACGGCCAC TCCGGGATCGCGCGCCTGGCGCTCTTCTACGCGCGCGGCCTCTGCGGCCTCGTCGACGCG TCCCGCGGCACGGGCGTCGCCAACGCCGGCCTCGTCTACTTCAACGGCCGCCTGCTGGCC ATGTCCGAGGACGACCTACCGTACCAGGTGCGCGTGACCGCCGACGGGGACCTCCGCACC GTCGGGCGCTACGACTTCGAAGGGCAGCTCGGGTGCGCCAGCATGATCGCGCACCCCAAG CTGGACCCGGCCTCCGGCGACCTCTTCGCGCTCAGCTACGACGTCATCCGGCGGCCCTAC CTGAGGTACTTCTACTTCCGGCCCGACGGCACCAAGTCCGACGACGTGGAGATCCCGCTG GAGCAGCCGACCATGATCCACGACTTCGCCATCACGGAGCGGTTCGTGGTGGTGCCCGAC CACCAGGTGGTGTTCAAGCTCGGCGAGATGCTCCGCGGCGGGTCCCCCGTGGTGCTGGAC CAGGGCAAGACGTCCCGCTTCGGCGTGCTGCCCAAGTACGCGCGCGACGCGTCGGAGATG GTGTGGGTGGACGTGCCGGACTGCTTCTGCTTCCACCTGTGGAACGCGTGGGAGGAGCCC GGCACGGGGGAGGTGGTGGTGGTCGGGTCCTGCATGACCCCCGCCGACTCCATCTTCAAC GACGACGGCGGCGAGGACGGGCGGCTCCAGAGCGTGCTGACCGAGATCCGGCTGGACACG CGCACGGGCGCGTCCACGCGCCGCGCCGTGCTGCCTCCGTCGGCGCAGGTGAACCTGGAG GTCGGGATGGTGAACCGCAACATGGTGGGGCGGAGGACGCGGTACGCGTACCTGGCCGTG GCGGAGCCGTGGCCCAAGGTGTCCGGGTTCGCCAAGGTGGACCTGGACACGGGCGACCTC GTCCGGTTCGACTACGGCGACGGCCGCTTCGGCGGGGAGCCCTGCTTCGTGCCCACCGAG GGCGCGCCGGCGCGCGGCGAGGACGACGGCTACATCCTGTCCCTCGTCCGCGACGAGCGG GCGGGCACGTCGGAGCTCCTGGTAGTGAACGCCGCCGACATGCGGCTGGAGGCCACGGTC CAGCTACCCTCCCGCGTGCCCTATGGCTTCCACGGCACCTTCATCGGCGAACGGGAGCTA GAGGCCCAGGCCTGA