Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041214_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:3:105721754:105727634:-1 gene:Zm00001d041214 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

ATGTGGAACCCACTGTCCTGGGTCATGGAGGCTGCAGCAATCATGGCCATTGCTCTTGCC
AATGGAGGGGGGAAGCCACCAGATTGGCAGGACTTTGTCGGTATCATAACTCTGCTTGTC
ATCAACTCAACAATCAGTTTTATCGAGGAAAACAATGCTGGTAATGCTGCAGCAGCCCTC
ATGGCTCGCCTCGCACCTAAAGCCAAGGTTCTTCGTGATGGCCGATGGACCGAGGAAGAC
GCAGCCATTCTTGTACCAGGAGACATTGTTAGTATTAAACTCGGAGATATTATACCTGCA
GATGCACGCCTCCTTGAGGGGGATCCTTTGAAGATCGATCAGTCTGCTCTGACCGGAGAG
TCACTGCCGGTCACTAAAGGTCCCGGTGATGGTGTCTATTCTGGTTCGACGGTCAAGCAA
GGTGAAATCGAAGCTGTTGTGATTGCCACAGGTGTCCACACTTTCTTCGGAAAGGCTGCT
CACCTTGTTGACTCCACAAACCAAGTTGGCCATTTCCAGAAGGTCCTGACGGCTATCGGG
AACTTCTGTATTTGCTCAATTGCTGTGGGGATGTTTGTTGAGATCATTGTCATGTATCCT
ATCCAGCACAGGGCTTACCGCCCTGGGATCGACAACCTCCTCGTCCTTCTCATTGGAGGC
ATCCCCATAGCCATGCCGACCGTCTTATCTGTAACTATGGCTATTGGGTCCCATCGTTTG
TCTCAACAGGGGGCTATCACAAAAAGAATGACTGCAATCGAGGAGATGGCTGGCATGGAT
GTTCTTTGCAGCGATAAAACAGGAACCTTGACCCTGAATAAGCTTACTGTGGATAGGAAC
CTTGTTGAGGTTTTTGAAAGGGGCACTACTCAGGACCAAGTGATTCTCATGGCTGCCAGA
GCGTCTCGCACAGAAAACCAAGATGCTATTGATACTGCTATAGTTGGGATGCTAGCTGAT
CCTAAAGAGGCACGCGCTGGAATCCAAGAAGTTCACTTCCTGCCATTCAATCCTACTGAC
AAAAGAACAGCACTGACATACATTGATGGTGATGGGAAAATGTATCGTGTTAGTAAGGGT
GCACCTGAGCAGATTCTCCACTTGGCTCACAATAAGTCAGATATAGAGAGGAGAGTACAT
GCTATGATTGATAAATTTGCAGAGCGTGGACTTAGATCACTTGCTGTAGCATATCAGGAA
GTGCCTGAGGGGAGGAAAGAAAGTCCTGGTGGTCCATGGCACTTCGTTGGTCTCATGCCA
CTTTTTGACCCTCCAAGACATGACAGTGCTGAAACAATTAGAAGGGCACTCAACCTTGGT
GTTAATGTTAAGATGATCACAGGGGATCAGTTGGCAATCGGAAAGGAAACAGGACGTCGT
CTAGGAATGGGTACAAATATGTACCCCTCTTCTGCTTTATTAGGACAGAACAAGGATGAG
TCTATTGCTGCTTTACCAGTTGATGATCTCATTGAGAAAGCCGATGGTTTTGCTGGTGTA
TTCCCTGAACATAAGTATGAGATCGTGAAACGTCTACAAGCACGGAAGCATATCTGTGGA
ATGACTGGGGATGGAGTAAATGATGCTCCAGCCCTGAAGAAAGCGGATATCGGTATTGCT
GTTGCCGATGCAACTGATGCAGCCAGGAGTGCTTCAGATATTGTCCTCACAGAACCTGGA
CTTAGTGTGATCATTAGTGCTGTGCTTACTAGTCGTGCAATTTTCCAGCGTATGAAGAAT
TACACGATCTATGCTGTCTCTATCACCATTCGTATTGTGCTTGGATTTATGCTCCTTGCC
CTCATTTGGAAATTTGATTTCCCCCCATTCATGGTCCTAATCATTGCAATTCTAAATGAT
GGTACCATAATGACTATATCCAAGGATCGTGTAAAGCCATCCCCATTACCTGACAGCTGG
AAGTTGGCTGAAATTTTCACAACTGGAGTTGTCCTTGGTGGATATCAGGCAATGATGACT
GTCATCTTCTTTTGGGCTGCATACAAGACAAACTTTTTCCCAAAAATATTTCATGTGGAA
AGCCTTGAGAAGACAGCTCAAGATGATTTCCAAAAGCTTGCATCTGCTGTTTACCTGCAA
GTTAGCACCATCAGCCAGGCCCTCATCTTCGTGACAAGGTCCCGGAGCTGGTCATTTGTC
GAGCGCCCAGGGTTTCTATTGGTCTTTGCTTTCTTGGTTGCGCAGCTGATTGCCACACTG
ATTGCTGTGTACGCCGACTGGGCGTTCACTTCGATCAAAGGCATTGGGTGGGGCTGGGCT
GGCATTGTGTGGCTGTACAACATCATCTTCTACTTCCCTCTCGATATCATCAAGTTCCTC
ATCAGATATGCTCTTAGTGGGAAAGCGTGGGATCTTGTCATTGAGCAGAGGATTGCGTTC
ACAAGGAAAAAGGACTTTGGTAGGGAGGAGAGGGAGCTGAAGTGGGCACATGCACAGAGG
ACCCTCCATGGGCTACAGGCACCTGATGCCAAGATGTTCCCAGAGAAGGCTGGGTACAAT
GAGCTGAACCAGATGGCTGAAGAGGCGAAGAGGAGGGCCGAGATTGCAAGGCTGCGGGAG
CTTCACACACTCAAGGGGCATGTGGAGTCTGTTGTGAAGCTGAAGGGACTCGACATCGAG
ACCATCCAGCAGTCCTACACAGTGTAA

Peptide Sequence

PEP ID

Zm00001d041214_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:3:105721754:105727634:-1 gene:Zm00001d041214 transcript:Zm00001d041214_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLVINSTISFIEENNAGNAAAAL
MARLAPKAKVLRDGRWTEEDAAILVPGDIVSIKLGDIIPADARLLEGDPLKIDQSALTGE
SLPVTKGPGDGVYSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIG
NFCICSIAVGMFVEIIVMYPIQHRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL
SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRNLVEVFERGTTQDQVILMAAR
ASRTENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDGDGKMYRVSKG
APEQILHLAHNKSDIERRVHAMIDKFAERGLRSLAVAYQEVPEGRKESPGGPWHFVGLMP
LFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDE
SIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIA
VADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLA
LIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGGYQAMMT
VIFFWAAYKTNFFPKIFHVESLEKTAQDDFQKLASAVYLQVSTISQALIFVTRSRSWSFV
ERPGFLLVFAFLVAQLIATLIAVYADWAFTSIKGIGWGWAGIVWLYNIIFYFPLDIIKFL
IRYALSGKAWDLVIEQRIAFTRKKDFGREERELKWAHAQRTLHGLQAPDAKMFPEKAGYN
ELNQMAEEAKRRAEIARLRELHTLKGHVESVVKLKGLDIETIQQSYTV

Transcript Sequence

Transcript ID

Zm00001d041214_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:105721754:105727634:-1 gene:Zm00001d041214 gene_biotype:protein_coding transcript_biotype:protein_coding description:ATPase 4 plasma membrane-type
Sequence

GTCTGTCTGTCGCGGTGTCGCCTGACACCTTCTTCTTCCTCACTCCCCCCTCAACCTCAT
CCCCATCCCGCCCTCGCACTTCCCACCCACCCCAATCCATCCATCCATCCACCCGTCTGA
AAACCAAACCCACATTCACCAGAGAGCAAATTCCTCAAGTTTCTGGGTTTCATGTGGAAC
CCACTGTCCTGGGTCATGGAGGCTGCAGCAATCATGGCCATTGCTCTTGCCAATGGAGGG
GGGAAGCCACCAGATTGGCAGGACTTTGTCGGTATCATAACTCTGCTTGTCATCAACTCA
ACAATCAGTTTTATCGAGGAAAACAATGCTGGTAATGCTGCAGCAGCCCTCATGGCTCGC
CTCGCACCTAAAGCCAAGGTTCTTCGTGATGGCCGATGGACCGAGGAAGACGCAGCCATT
CTTGTACCAGGAGACATTGTTAGTATTAAACTCGGAGATATTATACCTGCAGATGCACGC
CTCCTTGAGGGGGATCCTTTGAAGATCGATCAGTCTGCTCTGACCGGAGAGTCACTGCCG
GTCACTAAAGGTCCCGGTGATGGTGTCTATTCTGGTTCGACGGTCAAGCAAGGTGAAATC
GAAGCTGTTGTGATTGCCACAGGTGTCCACACTTTCTTCGGAAAGGCTGCTCACCTTGTT
GACTCCACAAACCAAGTTGGCCATTTCCAGAAGGTCCTGACGGCTATCGGGAACTTCTGT
ATTTGCTCAATTGCTGTGGGGATGTTTGTTGAGATCATTGTCATGTATCCTATCCAGCAC
AGGGCTTACCGCCCTGGGATCGACAACCTCCTCGTCCTTCTCATTGGAGGCATCCCCATA
GCCATGCCGACCGTCTTATCTGTAACTATGGCTATTGGGTCCCATCGTTTGTCTCAACAG
GGGGCTATCACAAAAAGAATGACTGCAATCGAGGAGATGGCTGGCATGGATGTTCTTTGC
AGCGATAAAACAGGAACCTTGACCCTGAATAAGCTTACTGTGGATAGGAACCTTGTTGAG
GTTTTTGAAAGGGGCACTACTCAGGACCAAGTGATTCTCATGGCTGCCAGAGCGTCTCGC
ACAGAAAACCAAGATGCTATTGATACTGCTATAGTTGGGATGCTAGCTGATCCTAAAGAG
GCACGCGCTGGAATCCAAGAAGTTCACTTCCTGCCATTCAATCCTACTGACAAAAGAACA
GCACTGACATACATTGATGGTGATGGGAAAATGTATCGTGTTAGTAAGGGTGCACCTGAG
CAGATTCTCCACTTGGCTCACAATAAGTCAGATATAGAGAGGAGAGTACATGCTATGATT
GATAAATTTGCAGAGCGTGGACTTAGATCACTTGCTGTAGCATATCAGGAAGTGCCTGAG
GGGAGGAAAGAAAGTCCTGGTGGTCCATGGCACTTCGTTGGTCTCATGCCACTTTTTGAC
CCTCCAAGACATGACAGTGCTGAAACAATTAGAAGGGCACTCAACCTTGGTGTTAATGTT
AAGATGATCACAGGGGATCAGTTGGCAATCGGAAAGGAAACAGGACGTCGTCTAGGAATG
GGTACAAATATGTACCCCTCTTCTGCTTTATTAGGACAGAACAAGGATGAGTCTATTGCT
GCTTTACCAGTTGATGATCTCATTGAGAAAGCCGATGGTTTTGCTGGTGTATTCCCTGAA
CATAAGTATGAGATCGTGAAACGTCTACAAGCACGGAAGCATATCTGTGGAATGACTGGG
GATGGAGTAAATGATGCTCCAGCCCTGAAGAAAGCGGATATCGGTATTGCTGTTGCCGAT
GCAACTGATGCAGCCAGGAGTGCTTCAGATATTGTCCTCACAGAACCTGGACTTAGTGTG
ATCATTAGTGCTGTGCTTACTAGTCGTGCAATTTTCCAGCGTATGAAGAATTACACGATC
TATGCTGTCTCTATCACCATTCGTATTGTGCTTGGATTTATGCTCCTTGCCCTCATTTGG
AAATTTGATTTCCCCCCATTCATGGTCCTAATCATTGCAATTCTAAATGATGGTACCATA
ATGACTATATCCAAGGATCGTGTAAAGCCATCCCCATTACCTGACAGCTGGAAGTTGGCT
GAAATTTTCACAACTGGAGTTGTCCTTGGTGGATATCAGGCAATGATGACTGTCATCTTC
TTTTGGGCTGCATACAAGACAAACTTTTTCCCAAAAATATTTCATGTGGAAAGCCTTGAG
AAGACAGCTCAAGATGATTTCCAAAAGCTTGCATCTGCTGTTTACCTGCAAGTTAGCACC
ATCAGCCAGGCCCTCATCTTCGTGACAAGGTCCCGGAGCTGGTCATTTGTCGAGCGCCCA
GGGTTTCTATTGGTCTTTGCTTTCTTGGTTGCGCAGCTGATTGCCACACTGATTGCTGTG
TACGCCGACTGGGCGTTCACTTCGATCAAAGGCATTGGGTGGGGCTGGGCTGGCATTGTG
TGGCTGTACAACATCATCTTCTACTTCCCTCTCGATATCATCAAGTTCCTCATCAGATAT
GCTCTTAGTGGGAAAGCGTGGGATCTTGTCATTGAGCAGAGGATTGCGTTCACAAGGAAA
AAGGACTTTGGTAGGGAGGAGAGGGAGCTGAAGTGGGCACATGCACAGAGGACCCTCCAT
GGGCTACAGGCACCTGATGCCAAGATGTTCCCAGAGAAGGCTGGGTACAATGAGCTGAAC
CAGATGGCTGAAGAGGCGAAGAGGAGGGCCGAGATTGCAAGGCTGCGGGAGCTTCACACA
CTCAAGGGGCATGTGGAGTCTGTTGTGAAGCTGAAGGGACTCGACATCGAGACCATCCAG
CAGTCCTACACAGTGTAACTTTGCCTGCCCTTCCCAGAGGAAGTTTCTTGTTCTTTTTAC
CCACCGGCGTGTGAATTTGATGGTGGCTGGCTTCTCTTTGTTTTATTTATTTATTTAACC
GAGCTGCAAGCACCGACAAGTAGCTGAAATGAGACAGACAGACCCCTCGCTGTAATCC