Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041201_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:105179821:105183171:-1 gene:Zm00001d041201 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

ATGAAGATGCTGCGGCGGCTCATGCTGAGCCTGAGCTTCATCCTCCTCCTCCCTTCCTAT
CTCGCCTACCCACTATGCACCGATGCAAGGGCGCCGGTGCTGCTCAACACCACGCTCAAG
TTTTGCGCCTCCCCCAGCAGGAACAGCAGAGGCTGCTGCGACGCCACCGCTGATGCCGCG
CTCAGCAAGCAGTTCGACGCCATGGCCATCTCCGACGCTGCCTGCGCTGCCGTCGTCAAG
TCAATCCTCTGCGCTAAATGCAGTCCATATTCCGCGGACCTGTTCGGCGCGGGGCCAAAG
ATCCGGACGGTTCCTTCCCTCTGCAACTCCACGTCGTCGGCAAACTCTGCTGAGTCCAAG
GAAACCACCACCACCACCACTCAGGACTACTGCAAACTCGTCTGGGATACTTGCAAGGAC
GTGAGCATCGCCAGCTCTCCCTTCCAACCCCCGCTGCAAGGCACCGCGCCGCCTCCTACT
TCACCGTCGAAGCTCACCGACGCGTGGCAGTCCCAGAGCGACTTCTGCGGCTCCTTCGGC
GGCCGGTCGTCTGTATGCCTCAGCGGCGACACGGTCTCGTTCAACGCCGCCGGACCTTCA
CCCTCCCCAAGACCAGAACCAAGAGGGGTATGCCTGGAGAGGATCGACAACGGGTCCTAC
CTTAGCCTGGCTCCTCACCCCGACGGCTCCAGCAGGATCTTCCTCGGCAGCCAAGCCGGG
AAGATATGGCTGGCCACCGTCCCCGAGCAAGGGTCCGGGGGCGCGCTGCAGTTCGAGGGC
GCAGGCCCATTTGTCGACCTGACCGACCAGGTGCACTTCGACTCGGCGTTGGGGCTCATG
GGCATGGCGTTCCACCCGGGTTTCGCGACCAACGGCCGCTTCTTCGCCTCGTACAACTGT
GACCGGACCAAGTCGCCCAGCTGCACCGGGAGGTGCTCCTGCAACTCCGACGTGGGCTGC
GACCCTTCCAAGCTTGGCACCGACAGCGGCGCCCAGCCGTGCCAGTACCAGGTCGTGGTG
TCAGAGTACTCAGCCAGAGGCTCCGCCGCGGCGAATGTTTCTCAGGCAACTTCTGCCGCC
GATCCATCTGAGGTGAGGAGAATCTTCGCGATGGGGCTGCCTTACACGTCCGGGCATGGA
GGCCAGGTACTGTTCGGCCCTGCCGATGGGTACCTCTACCTCATGCTGGGCGACGGAGGG
AAGGGGGACCCTTTCAACTTCGCCCAGAACAAGAAGTCGCTCCTGGGCAAGATCGTGAGG
CTTGATGTCGACAGCACGCCTTCTTCATCAGGAGGAGATCTCGGCAACACGAGTCTGTGG
GGCAATTACTCCATCCCGAAGGACAACCCTTACGCCGATGACAGCGAGCTAGAGCCAGAG
ATCTGGGCGCTGGGCCTTAGAAACCCGTGGAGGTGCAGCTTTGACTCCGAGAGGCCCTCC
TACTTCTACTGTGGAGATGTTGGGCAGGACGCGTACGAGGAGGTGGATCTCATCTCCAAA
GGCGGGAACTATGGATGGCGTGCGCTGGAGGGTCCGCTCGTCTATCACCCGCAGTGGGCG
CCTGGAGGAAACACCTCGCTCAGCTCCATTGACGCCATTCCTCCCATCATGGGATACAGC
CATTCAGATGTCAACAAGAATATCGGGTCGGCGTCGATCATGGGAGGTTACGTGTACAGA
GGGTCCGCTGATCCCTGCCTGTATGGAAGGTATTTGTATGCTGACCTGTACGCCTCGGCC
ATGTGGACCGGCGCGGAGGCTCCAGAGAGCAGTGGCAACTACACCTCCGCTCTGATCCCC
TTCAGCTGCTCCAAGGAGTCTCCGATACCATGCGACGCCGCTGCTGGGAGCCCTCTCCCG
TCGCTTGGCTACGTATACTCGTTCGGCGAGGACAACAGCAAGGACATGTATGTGTTGGCC
AGCAAAGGCGTCTACCGAGTTGTGAGGCCCAGCCTCTGCAGCTATACTTGCCCGGCAGAG
AGACAGGAGACATCGCCGCCTGCTGCTCCTTCATCCAACAAGGCGTCCATGGCGGAGATG
GGAATGGGAATGCTTTTGGTGTCTGTCATTGTGGTTTGGGTTTTGGTAACATAG

Peptide Sequence

PEP ID

Zm00001d041201_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:105179821:105183171:-1 gene:Zm00001d041201 transcript:Zm00001d041201_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

MKMLRRLMLSLSFILLLPSYLAYPLCTDARAPVLLNTTLKFCASPSRNSRGCCDATADAA
LSKQFDAMAISDAACAAVVKSILCAKCSPYSADLFGAGPKIRTVPSLCNSTSSANSAESK
ETTTTTTQDYCKLVWDTCKDVSIASSPFQPPLQGTAPPPTSPSKLTDAWQSQSDFCGSFG
GRSSVCLSGDTVSFNAAGPSPSPRPEPRGVCLERIDNGSYLSLAPHPDGSSRIFLGSQAG
KIWLATVPEQGSGGALQFEGAGPFVDLTDQVHFDSALGLMGMAFHPGFATNGRFFASYNC
DRTKSPSCTGRCSCNSDVGCDPSKLGTDSGAQPCQYQVVVSEYSARGSAAANVSQATSAA
DPSEVRRIFAMGLPYTSGHGGQVLFGPADGYLYLMLGDGGKGDPFNFAQNKKSLLGKIVR
LDVDSTPSSSGGDLGNTSLWGNYSIPKDNPYADDSELEPEIWALGLRNPWRCSFDSERPS
YFYCGDVGQDAYEEVDLISKGGNYGWRALEGPLVYHPQWAPGGNTSLSSIDAIPPIMGYS
HSDVNKNIGSASIMGGYVYRGSADPCLYGRYLYADLYASAMWTGAEAPESSGNYTSALIP
FSCSKESPIPCDAAAGSPLPSLGYVYSFGEDNSKDMYVLASKGVYRVVRPSLCSYTCPAE
RQETSPPAAPSSNKASMAEMGMGMLLVSVIVVWVLVT

Transcript Sequence

Transcript ID

Zm00001d041201_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:105179821:105183171:-1 gene:Zm00001d041201 gene_biotype:protein_coding transcript_biotype:protein_coding description:HIPL1 protein
Sequence

AGTGTGGACGCCAGACCCCGTCACTGTCAGTCGTCCTCTTCCACTCTAGTATTACCGGTA
GATCGACAAAGATTTCAGCCTCCGTTTTCGACGCCATCAGAGCAGGCTCCACAGATGAAG
ATGCTGCGGCGGCTCATGCTGAGCCTGAGCTTCATCCTCCTCCTCCCTTCCTATCTCGCC
TACCCACTATGCACCGATGCAAGGGCGCCGGTGCTGCTCAACACCACGCTCAAGTTTTGC
GCCTCCCCCAGCAGGAACAGCAGAGGCTGCTGCGACGCCACCGCTGATGCCGCGCTCAGC
AAGCAGTTCGACGCCATGGCCATCTCCGACGCTGCCTGCGCTGCCGTCGTCAAGTCAATC
CTCTGCGCTAAATGCAGTCCATATTCCGCGGACCTGTTCGGCGCGGGGCCAAAGATCCGG
ACGGTTCCTTCCCTCTGCAACTCCACGTCGTCGGCAAACTCTGCTGAGTCCAAGGAAACC
ACCACCACCACCACTCAGGACTACTGCAAACTCGTCTGGGATACTTGCAAGGACGTGAGC
ATCGCCAGCTCTCCCTTCCAACCCCCGCTGCAAGGCACCGCGCCGCCTCCTACTTCACCG
TCGAAGCTCACCGACGCGTGGCAGTCCCAGAGCGACTTCTGCGGCTCCTTCGGCGGCCGG
TCGTCTGTATGCCTCAGCGGCGACACGGTCTCGTTCAACGCCGCCGGACCTTCACCCTCC
CCAAGACCAGAACCAAGAGGGGTATGCCTGGAGAGGATCGACAACGGGTCCTACCTTAGC
CTGGCTCCTCACCCCGACGGCTCCAGCAGGATCTTCCTCGGCAGCCAAGCCGGGAAGATA
TGGCTGGCCACCGTCCCCGAGCAAGGGTCCGGGGGCGCGCTGCAGTTCGAGGGCGCAGGC
CCATTTGTCGACCTGACCGACCAGGTGCACTTCGACTCGGCGTTGGGGCTCATGGGCATG
GCGTTCCACCCGGGTTTCGCGACCAACGGCCGCTTCTTCGCCTCGTACAACTGTGACCGG
ACCAAGTCGCCCAGCTGCACCGGGAGGTGCTCCTGCAACTCCGACGTGGGCTGCGACCCT
TCCAAGCTTGGCACCGACAGCGGCGCCCAGCCGTGCCAGTACCAGGTCGTGGTGTCAGAG
TACTCAGCCAGAGGCTCCGCCGCGGCGAATGTTTCTCAGGCAACTTCTGCCGCCGATCCA
TCTGAGGTGAGGAGAATCTTCGCGATGGGGCTGCCTTACACGTCCGGGCATGGAGGCCAG
GTACTGTTCGGCCCTGCCGATGGGTACCTCTACCTCATGCTGGGCGACGGAGGGAAGGGG
GACCCTTTCAACTTCGCCCAGAACAAGAAGTCGCTCCTGGGCAAGATCGTGAGGCTTGAT
GTCGACAGCACGCCTTCTTCATCAGGAGGAGATCTCGGCAACACGAGTCTGTGGGGCAAT
TACTCCATCCCGAAGGACAACCCTTACGCCGATGACAGCGAGCTAGAGCCAGAGATCTGG
GCGCTGGGCCTTAGAAACCCGTGGAGGTGCAGCTTTGACTCCGAGAGGCCCTCCTACTTC
TACTGTGGAGATGTTGGGCAGGACGCGTACGAGGAGGTGGATCTCATCTCCAAAGGCGGG
AACTATGGATGGCGTGCGCTGGAGGGTCCGCTCGTCTATCACCCGCAGTGGGCGCCTGGA
GGAAACACCTCGCTCAGCTCCATTGACGCCATTCCTCCCATCATGGGATACAGCCATTCA
GATGTCAACAAGAATATCGGGTCGGCGTCGATCATGGGAGGTTACGTGTACAGAGGGTCC
GCTGATCCCTGCCTGTATGGAAGGTATTTGTATGCTGACCTGTACGCCTCGGCCATGTGG
ACCGGCGCGGAGGCTCCAGAGAGCAGTGGCAACTACACCTCCGCTCTGATCCCCTTCAGC
TGCTCCAAGGAGTCTCCGATACCATGCGACGCCGCTGCTGGGAGCCCTCTCCCGTCGCTT
GGCTACGTATACTCGTTCGGCGAGGACAACAGCAAGGACATGTATGTGTTGGCCAGCAAA
GGCGTCTACCGAGTTGTGAGGCCCAGCCTCTGCAGCTATACTTGCCCGGCAGAGAGACAG
GAGACATCGCCGCCTGCTGCTCCTTCATCCAACAAGGCGTCCATGGCGGAGATGGGAATG
GGAATGCTTTTGGTGTCTGTCATTGTGGTTTGGGTTTTGGTAACATAGGATCATGCTGTG
ATGAGACATGTCATATGCAACGACCAGTCCTGAGGAAGAATAAGAGTGCCAGTCAGTCAG
TGAGATTAGAATAGAAGTGATAGGCAGTCAGTTAGGCTGTCTCCAATAAATTGTGTATAT
GATCATGTAAAATATTATTTTATATTATAGACTGTATTGTTCACAGAACGAAGTTTGAAA
TACTTCTGAGATGGGTC