Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041173_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:102052605:102057121:1 gene:Zm00001d041173 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

ATGGCTCCACTCGTCGCTACTGCCACGATGAACCACGCTGTGGCCCATCTGCTAGGACCC
AATCATGAGAGTTTCTCACGGCACCATCTTTCTTCCTCGCTGCAGCAAAACAGTAAGCGA
AGGTGTAATCTTAGCTTCAGGCCACGAGCTGCTGAGAGTCAGAATGGAAGCCAAACGCTG
AGCCCCTCGGAAGTCCCTAAAAGAGACTGGTTCCCCTCTGACTTCATCTTTGGTGCCGCC
ACTTCAGCGTACCAAATTGAAGGTGGATGGAACGAGGATGGAAAGAAGCCAAGCACATGG
GATCACTTCTGCCACACTTTCCCAGATTGGATAGCGGATCACAGCAATGGGGATGTTGCA
GCAGATTCGTACCACATGTACAAGGAGGATGTCAGATTACTGAAGGAAATAGGGATGGAC
TCCTATAGGTTCTCCATCTCTTGGTCCAGAATACTGCCGAATGGCACACTCGAAGGAGGT
ATTAATCCATATGGCATCAAGTACTACAAAAATCTCATCAACTTGTTGGTAGAGAACGGC
ATAGAGCCATTTGTGACAATTTTCCACTGGGACACGCCTCAAGCACTGGTAGACAAGTAT
GGTGGCTTTTTAGATGAGAGGATTGTAAAAGATTACACAGACTTCGCTAAGGTGTGCTTT
GAGAACTTCGGTGATAAAGTAAACAATTGGTTGACCTTTAATGAGCCCCAAACGTTTTCT
TCTTTTTCATACGGAACCGGGCTATGCGCCCCAGGGCGGTGCACCCCAGGACAAAAATGT
GCTAACCCAATTGGAAACTCGCTCACTGAGCCATACACTGTTGGCCATAACCTTCTCCGA
GCCCACGCTGAGGCTGTTGATCTTTACAACAAGTATTACAAGGGTGAGAATGGACGCATA
GGGCTTGCATTTGACGTAATGGGTCGTGTCCCATACGAAAAGTCGGCGTTTACGGATCAA
CAGGCCGAACAAAGGTCCTGGGACATTAACCTAGGATGGTTCTTGGAGCCGGTTGTTCGT
GGTGACTATCCCTTCTCCATGAGATCATTGGCAAGGGAACGACTACCCTTCTTCACTGAC
AAAGAGCAAGAGAAGCTAGTGGGTTCCTATGACATGTTGGGGTTAAACTATTATACCTCA
AGGTTCTCTAAAAACATCGATATCTCACCAAACTACTCGCCAGTGCTCAACACTGACGAC
GCATATGCCAGTCAAGAAACGAATGGGCCTGACGGGAATCCCATTGGTCCTTGGATGGGG
AATTCGTGGATCTACCTATATCCTGAAGGCCTAAAGGATCTGCTTATGATCATGAAGAAC
AAATACGGAAACCCACCCATCTACATCACTGAGAACGGGATGGGTGACGTTGACCATGGC
GATCTACCCATGGAAGTTGCCTTGGATGACCACAAAAGAGTACATTACCTCCAGCGCCAC
ATCGCAACTCTTAAGGAGTCAAGAGACTTGGGAGCGAATGTGCAGGGCTACTTCGCTTGG
TCTCTATTGGACAACTTCGAATGGTTCTCCGGCTACACGGAACGTTACGGCATCGTCTAT
GTTGACCGCAACGATGGCTGCAAACGCTACATGAAGCGGTCAGCCAAGTGGTTCAAAGAG
TTCAATGCTGCGAAGAAAGCGGCTGCCAAGAAGATTCTTACGCCAGCTTAG

Peptide Sequence

PEP ID

Zm00001d041173_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:102052605:102057121:1 gene:Zm00001d041173 transcript:Zm00001d041173_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

MAPLVATATMNHAVAHLLGPNHESFSRHHLSSSLQQNSKRRCNLSFRPRAAESQNGSQTL
SPSEVPKRDWFPSDFIFGAATSAYQIEGGWNEDGKKPSTWDHFCHTFPDWIADHSNGDVA
ADSYHMYKEDVRLLKEIGMDSYRFSISWSRILPNGTLEGGINPYGIKYYKNLINLLVENG
IEPFVTIFHWDTPQALVDKYGGFLDERIVKDYTDFAKVCFENFGDKVNNWLTFNEPQTFS
SFSYGTGLCAPGRCTPGQKCANPIGNSLTEPYTVGHNLLRAHAEAVDLYNKYYKGENGRI
GLAFDVMGRVPYEKSAFTDQQAEQRSWDINLGWFLEPVVRGDYPFSMRSLARERLPFFTD
KEQEKLVGSYDMLGLNYYTSRFSKNIDISPNYSPVLNTDDAYASQETNGPDGNPIGPWMG
NSWIYLYPEGLKDLLMIMKNKYGNPPIYITENGMGDVDHGDLPMEVALDDHKRVHYLQRH
IATLKESRDLGANVQGYFAWSLLDNFEWFSGYTERYGIVYVDRNDGCKRYMKRSAKWFKE
FNAAKKAAAKKILTPA

Transcript Sequence

Transcript ID

Zm00001d041173_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:102052605:102057121:1 gene:Zm00001d041173 gene_biotype:protein_coding transcript_biotype:protein_coding description:Beta-glucosidase 17
Sequence

ACCAGCTCAAAGCTGCTTTAGCTAGCTAGCAAGAGAGAGAGAGAGAGAGAAAAAATATGG
CTCCACTCGTCGCTACTGCCACGATGAACCACGCTGTGGCCCATCTGCTAGGACCCAATC
ATGAGAGTTTCTCACGGCACCATCTTTCTTCCTCGCTGCAGCAAAACAGTAAGCGAAGGT
GTAATCTTAGCTTCAGGCCACGAGCTGCTGAGAGTCAGAATGGAAGCCAAACGCTGAGCC
CCTCGGAAGTCCCTAAAAGAGACTGGTTCCCCTCTGACTTCATCTTTGGTGCCGCCACTT
CAGCGTACCAAATTGAAGGTGGATGGAACGAGGATGGAAAGAAGCCAAGCACATGGGATC
ACTTCTGCCACACTTTCCCAGATTGGATAGCGGATCACAGCAATGGGGATGTTGCAGCAG
ATTCGTACCACATGTACAAGGAGGATGTCAGATTACTGAAGGAAATAGGGATGGACTCCT
ATAGGTTCTCCATCTCTTGGTCCAGAATACTGCCGAATGGCACACTCGAAGGAGGTATTA
ATCCATATGGCATCAAGTACTACAAAAATCTCATCAACTTGTTGGTAGAGAACGGCATAG
AGCCATTTGTGACAATTTTCCACTGGGACACGCCTCAAGCACTGGTAGACAAGTATGGTG
GCTTTTTAGATGAGAGGATTGTAAAAGATTACACAGACTTCGCTAAGGTGTGCTTTGAGA
ACTTCGGTGATAAAGTAAACAATTGGTTGACCTTTAATGAGCCCCAAACGTTTTCTTCTT
TTTCATACGGAACCGGGCTATGCGCCCCAGGGCGGTGCACCCCAGGACAAAAATGTGCTA
ACCCAATTGGAAACTCGCTCACTGAGCCATACACTGTTGGCCATAACCTTCTCCGAGCCC
ACGCTGAGGCTGTTGATCTTTACAACAAGTATTACAAGGGTGAGAATGGACGCATAGGGC
TTGCATTTGACGTAATGGGTCGTGTCCCATACGAAAAGTCGGCGTTTACGGATCAACAGG
CCGAACAAAGGTCCTGGGACATTAACCTAGGATGGTTCTTGGAGCCGGTTGTTCGTGGTG
ACTATCCCTTCTCCATGAGATCATTGGCAAGGGAACGACTACCCTTCTTCACTGACAAAG
AGCAAGAGAAGCTAGTGGGTTCCTATGACATGTTGGGGTTAAACTATTATACCTCAAGGT
TCTCTAAAAACATCGATATCTCACCAAACTACTCGCCAGTGCTCAACACTGACGACGCAT
ATGCCAGTCAAGAAACGAATGGGCCTGACGGGAATCCCATTGGTCCTTGGATGGGGAATT
CGTGGATCTACCTATATCCTGAAGGCCTAAAGGATCTGCTTATGATCATGAAGAACAAAT
ACGGAAACCCACCCATCTACATCACTGAGAACGGGATGGGTGACGTTGACCATGGCGATC
TACCCATGGAAGTTGCCTTGGATGACCACAAAAGAGTACATTACCTCCAGCGCCACATCG
CAACTCTTAAGGAGTCAAGAGACTTGGGAGCGAATGTGCAGGGCTACTTCGCTTGGTCTC
TATTGGACAACTTCGAATGGTTCTCCGGCTACACGGAACGTTACGGCATCGTCTATGTTG
ACCGCAACGATGGCTGCAAACGCTACATGAAGCGGTCAGCCAAGTGGTTCAAAGAGTTCA
ATGCTGCGAAGAAAGCGGCTGCCAAGAAGATTCTTACGCCAGCTTAGAAATCGTTGGGCC
TGATGTATGGTATGGTGCCACGCATGAAAGACCGGGCACGTTTTTCTTTGCACTATCTGA
GGAGGCAGCATCTGTTCTCTCCAGCACCGTGGATTGTTCCCGCCAGTTCAGTATTTCCTT
ATTATGCAATAAATGAAGTGATCGATTTCCCCTTTTCAGTATCATGTAATGTTGAATTAT
TATAGAATATATCTTTTTTTTTGTCAAACATTGGGAACAAAAGCTGCTAACTCTACCATC
ACCGGACGATGTGACGTGATACAT