Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041136_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:99759976:99779526:1 gene:Zm00001d041136 gene_biotype:protein_coding transcript_biotype:protein_coding description:proline-rich family protein
Sequence

ATGTGCTTCCTGCAAAATCAAAGGATGATGAACTCGCTTTGTTCTCTGATATGCAGAAAG
TTGAGACGGACAACTTCTTACTGGAACCGTCAATCAGAAAAATTGAGATATTTCCCGGAA
GTAAAACTTGGTGTCAACATTCCTGCCCATGGAGAAAGCCATGAATTGCTTAACACAGAC
GGCGATAAAAATGATTATGAGTGGTTATTAACTCCTCCTGAAACTCCACTTTTTCGATCT
TTGGATGACGAAGAAAACCAATCCATCACTCAGGTTTCTAGGGGCAGAGCTCAGAGCAAG
CCTATACAAATTTCAAGATCATCCATGGTAGATAATAATCAAAGAGCTAGTAGAAGCAGT
GCAAGCTCAAGTAGGCTTAGCCCATCGCCATGCTCTATGGGAAGGACAAGATCATCTAGT
TCAGCTTCTCGCTCTAGTCCACCACTTGCTGAAACACAAACACCATCACGAAGATTGTCA
ACCCCTCCGATTGCTAAGACATTAACACCTCCTCGAAGGTCTCCAAGTCCTGTCTCAAGA
AGGATGAGTACTGGTTCAAGTGGCCCAACTTTGAATGGAACAAGAGGAGCTTCACCAGTG
AAATCTAATCACAGGTCTTCTTCACCAAAGCTGCATGGATGGCAATCAAATGTTCCTGGT
TTCTCTTTCGATGCGCCTTTGAACCTTCGCACATCTCTAACTGATCGTCCAGTATGCCGG
TCAAGGGGTGGATCGCCTTCATCTTTTAGTGGACTAGAAAAGGGTTCAAGAGGTAGAAGA
CTGTCAATGTCTCCCACTCCACCTAGAAGAGCCAGTTCATCTCACAGCATTGAACGGGAC
CGAATGAGCTCTTATAGCAAAGCTTCTGCAACATCATCTGGTGAGGATGATCTGGAGTCT
ATGCAGTCTGTACCAATTAGCTACTCCAGTAGCCCAGTTGTGAAAAAGAGCTTGGTTGTG
ATGAAAACCAGAACCATTGCATCATCAAAGAATCTGTCCAAAAAATTGACACCTAGTTCT
GTCCCAAAGCGGTCATTTGACTCTGCACTTTGGTTAATGGATCATCGCAAAGCTCCACAA
GATAGGTTTCGGCCACTTCTATCAGGTGCCCCTGCCAACACATTTGGTGCTGGGAATGGA
AATGATGTGCACAAACCTATGTTCTCACACAATTCTTCTTTGACAACTAGCAGCACTGCA
AGCTCTTACCATGGTGCCACTTTTGGCTCTTATATGCATGGCAGCCAAGAACAACATGAT
TTTGCTGGTGAATGGGAAGCAGATGATATTTCTCAGGGTCATGAGGATATATTTATGTTT
GATAAATTGGATGAGCTAAATGAAGACATTCATTACAAGAGCATGGAATCTACGGATAAT
TCACTGGTAATAGTAAAACATCTAGTAAGTGGCAGACAGGACTTGGAAGGAAGCAGAAGA
CCTAATCAGTCCTTATGCCATTCTACTGATATTTCTCATGTTAGCTTTAAGGCTACTTGC
TCTAGATGTGGGAAGTTTTTCGATGCGATGGATGTTGATGAAGAGGGTGTCTATTGTGAT
GCATGTGCTACAAAGGATGGGAATATCCTCACCAGTCCTATTGTACAAACTATAGGAGAA
GAAAACCAACAATATGGTAAAACTGCAAATTTGAAACCTTGCATCGCATCTGATTCTCCT
GTACCCACAGATTGTGAAATCTATAGCAAAGAAGTATCTCTTGATCATCAACTAGTGAAC
AATGAATCTTACGCTGATTGCCTGGACCAGGCCCCTCCAATTCACTCAATGGGGCACACA
CCTCAGGAAATGCTACTGGGGCAGGAGGAAAACATTGACGCTGAGCATAGAAATAAACAT
GTTGGGGATTCGTTAGGAAATACAAACGATAATTCCTTTCATCGATCTAGTGTGGATGAA
TGTGAACAAACAGAACCAACATCTGTAGGGCAGGACCTTTTTATCATAGACCAAATGAAT
AACCATAATCGTGGACTATCCCAATGTAATGAAAATGTCTCTGAATCTGTGACCTGTGAC
AATTCTCATCAACTGGGATCAACTACATATCAGAACCCTAAGCTTGAAACTACCGAGGAT
ACTGGGATATCAGTATTGTTAGTCCCTAAGCCCAACAGTAATAAATGGCCAAATATGCTC
TGTTCAGAACCCTATTATGCAAGAGATGGTGTCAGTATGATGAAGCGTAGCTTTGGACTG
GGCAGCTCTTCAGCTGCTTCTTCCAGTGATCTTGGGTCTTCAAGACAGTCAATCATATGT
TTTGAGCGCCTTAGGAGTGGTAAGAAGGGTGACTTTGAGAAGTCCCAGATAAGCAGTACT
ATTAGTTGTCAAAGCATTGCTTCTGTGTCAGATATGTCAATTTGTAGCTCTTCAGCTTCA
CTTTGCCCTCAGAGTGATGCAGTAGGAGATTCCTGTTTCCCAATTGACACTTTGGAAAGC
GGCACTTCAGGAACTCTGATCTCTTCTCAAGAAAATGATGATGCTTTTTGTAAGGATACT
TTGCCAAGTGCTATGGAATGTCCGTCTTCTTCACAGTTTATTGCTGATGATGACAGTCCC
GGTGACATGAAAATCCAGAGCTACTTAAGTGAGGTAGGATATACAACAGTTGAGAACCAT
AGTGCTTGCAGAATGACTGACATGGATTGTACCAGTACAAATATGTATTCTTTAGATACT
GAAATGCCAAGTGATACCCTAGAATCATCAGGCCCAGTGGAAAGTAGCATGCCTGAAACT
GAAGAGGATGCTTACACTATCAGTCAGTGTAATAAAGGTAGTGCTCCAGAACATTCAAGT
GATGAGAATAACTTTGATAATATTCAAATGCAGTCTGAAATAGTTCAGGGTTCAGCGGAG
GAAAACAGATTGGATGATTGTTGCATGTCTGCTATCTCGGAGGAGGACGTATTGATTTCT
GGACAAGAAGATGACATAAGGAATCTTCCCAATGATGAAGAATTATGTGCGGAGGTAGAA
GGACCAAGGAAACAAATCCAGAGATGTTTTACATTGGAAGAAGCTGCTGATACAATTCTC
TTCTGTAGTTCCATTGTCCACGACCTTGCATACAAGGCTGCGACTATTGCGTTGGAAAAC
AAGAAGGAACCAAAGTTTGTGGACTCTATTCGTCCAACTGTTGCAATTGTTAGAGGATCT
TTTGCTAAGGAAGAGAGTTTACCAAAGCTGCCTCACAGACGAACCCCAAACCGTAAGGTC
AAAAGGAAAAGATTGGAAGGCGAAACAACTACAACGGAAACTACAGAGAAAGACGTTGTC
GCGAATGACTCCCCCCCTGTATGTTCTGCATCGGGTATTACAAGGAATTCCGATAATATG
AAGCCGCCAAAGCTGGAGTCCAAGTGCAACTGTATAATTATGTAA

Peptide Sequence

PEP ID

Zm00001d041136_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:99759976:99779526:1 gene:Zm00001d041136 transcript:Zm00001d041136_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:proline-rich family protein
Sequence

MCFLQNQRMMNSLCSLICRKLRRTTSYWNRQSEKLRYFPEVKLGVNIPAHGESHELLNTD
GDKNDYEWLLTPPETPLFRSLDDEENQSITQVSRGRAQSKPIQISRSSMVDNNQRASRSS
ASSSRLSPSPCSMGRTRSSSSASRSSPPLAETQTPSRRLSTPPIAKTLTPPRRSPSPVSR
RMSTGSSGPTLNGTRGASPVKSNHRSSSPKLHGWQSNVPGFSFDAPLNLRTSLTDRPVCR
SRGGSPSSFSGLEKGSRGRRLSMSPTPPRRASSSHSIERDRMSSYSKASATSSGEDDLES
MQSVPISYSSSPVVKKSLVVMKTRTIASSKNLSKKLTPSSVPKRSFDSALWLMDHRKAPQ
DRFRPLLSGAPANTFGAGNGNDVHKPMFSHNSSLTTSSTASSYHGATFGSYMHGSQEQHD
FAGEWEADDISQGHEDIFMFDKLDELNEDIHYKSMESTDNSLVIVKHLVSGRQDLEGSRR
PNQSLCHSTDISHVSFKATCSRCGKFFDAMDVDEEGVYCDACATKDGNILTSPIVQTIGE
ENQQYGKTANLKPCIASDSPVPTDCEIYSKEVSLDHQLVNNESYADCLDQAPPIHSMGHT
PQEMLLGQEENIDAEHRNKHVGDSLGNTNDNSFHRSSVDECEQTEPTSVGQDLFIIDQMN
NHNRGLSQCNENVSESVTCDNSHQLGSTTYQNPKLETTEDTGISVLLVPKPNSNKWPNML
CSEPYYARDGVSMMKRSFGLGSSSAASSSDLGSSRQSIICFERLRSGKKGDFEKSQISST
ISCQSIASVSDMSICSSSASLCPQSDAVGDSCFPIDTLESGTSGTLISSQENDDAFCKDT
LPSAMECPSSSQFIADDDSPGDMKIQSYLSEVGYTTVENHSACRMTDMDCTSTNMYSLDT
EMPSDTLESSGPVESSMPETEEDAYTISQCNKGSAPEHSSDENNFDNIQMQSEIVQGSAE
ENRLDDCCMSAISEEDVLISGQEDDIRNLPNDEELCAEVEGPRKQIQRCFTLEEAADTIL
FCSSIVHDLAYKAATIALENKKEPKFVDSIRPTVAIVRGSFAKEESLPKLPHRRTPNRKV
KRKRLEGETTTTETTEKDVVANDSPPVCSASGITRNSDNMKPPKLESKCNCIIM

Transcript Sequence

Transcript ID

Zm00001d041136_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:99759976:99779526:1 gene:Zm00001d041136 gene_biotype:protein_coding transcript_biotype:protein_coding description:proline-rich family protein
Sequence

AAATGTGCTTCCTGCAAAATCAAAGGATGATGAACTCGCTTTGTTCTCTGATATGCAGAA
AGTTGAGACGGACAACTTCTTACTGGAACCGTCAATCAGAAAAATTGAGATATTTCCCGG
AAGTAAAACTTGGTGTCAACATTCCTGCCCATGGAGAAAGCCATGAATTGCTTAACACAG
ACGGCGATAAAAATGATTATGAGTGGTTATTAACTCCTCCTGAAACTCCACTTTTTCGAT
CTTTGGATGACGAAGAAAACCAATCCATCACTCAGGTTTCTAGGGGCAGAGCTCAGAGCA
AGCCTATACAAATTTCAAGATCATCCATGGTAGATAATAATCAAAGAGCTAGTAGAAGCA
GTGCAAGCTCAAGTAGGCTTAGCCCATCGCCATGCTCTATGGGAAGGACAAGATCATCTA
GTTCAGCTTCTCGCTCTAGTCCACCACTTGCTGAAACACAAACACCATCACGAAGATTGT
CAACCCCTCCGATTGCTAAGACATTAACACCTCCTCGAAGGTCTCCAAGTCCTGTCTCAA
GAAGGATGAGTACTGGTTCAAGTGGCCCAACTTTGAATGGAACAAGAGGAGCTTCACCAG
TGAAATCTAATCACAGGTCTTCTTCACCAAAGCTGCATGGATGGCAATCAAATGTTCCTG
GTTTCTCTTTCGATGCGCCTTTGAACCTTCGCACATCTCTAACTGATCGTCCAGTATGCC
GGTCAAGGGGTGGATCGCCTTCATCTTTTAGTGGACTAGAAAAGGGTTCAAGAGGTAGAA
GACTGTCAATGTCTCCCACTCCACCTAGAAGAGCCAGTTCATCTCACAGCATTGAACGGG
ACCGAATGAGCTCTTATAGCAAAGCTTCTGCAACATCATCTGGTGAGGATGATCTGGAGT
CTATGCAGTCTGTACCAATTAGCTACTCCAGTAGCCCAGTTGTGAAAAAGAGCTTGGTTG
TGATGAAAACCAGAACCATTGCATCATCAAAGAATCTGTCCAAAAAATTGACACCTAGTT
CTGTCCCAAAGCGGTCATTTGACTCTGCACTTTGGTTAATGGATCATCGCAAAGCTCCAC
AAGATAGGTTTCGGCCACTTCTATCAGGTGCCCCTGCCAACACATTTGGTGCTGGGAATG
GAAATGATGTGCACAAACCTATGTTCTCACACAATTCTTCTTTGACAACTAGCAGCACTG
CAAGCTCTTACCATGGTGCCACTTTTGGCTCTTATATGCATGGCAGCCAAGAACAACATG
ATTTTGCTGGTGAATGGGAAGCAGATGATATTTCTCAGGGTCATGAGGATATATTTATGT
TTGATAAATTGGATGAGCTAAATGAAGACATTCATTACAAGAGCATGGAATCTACGGATA
ATTCACTGGTAATAGTAAAACATCTAGTAAGTGGCAGACAGGACTTGGAAGGAAGCAGAA
GACCTAATCAGTCCTTATGCCATTCTACTGATATTTCTCATGTTAGCTTTAAGGCTACTT
GCTCTAGATGTGGGAAGTTTTTCGATGCGATGGATGTTGATGAAGAGGGTGTCTATTGTG
ATGCATGTGCTACAAAGGATGGGAATATCCTCACCAGTCCTATTGTACAAACTATAGGAG
AAGAAAACCAACAATATGGTAAAACTGCAAATTTGAAACCTTGCATCGCATCTGATTCTC
CTGTACCCACAGATTGTGAAATCTATAGCAAAGAAGTATCTCTTGATCATCAACTAGTGA
ACAATGAATCTTACGCTGATTGCCTGGACCAGGCCCCTCCAATTCACTCAATGGGGCACA
CACCTCAGGAAATGCTACTGGGGCAGGAGGAAAACATTGACGCTGAGCATAGAAATAAAC
ATGTTGGGGATTCGTTAGGAAATACAAACGATAATTCCTTTCATCGATCTAGTGTGGATG
AATGTGAACAAACAGAACCAACATCTGTAGGGCAGGACCTTTTTATCATAGACCAAATGA
ATAACCATAATCGTGGACTATCCCAATGTAATGAAAATGTCTCTGAATCTGTGACCTGTG
ACAATTCTCATCAACTGGGATCAACTACATATCAGAACCCTAAGCTTGAAACTACCGAGG
ATACTGGGATATCAGTATTGTTAGTCCCTAAGCCCAACAGTAATAAATGGCCAAATATGC
TCTGTTCAGAACCCTATTATGCAAGAGATGGTGTCAGTATGATGAAGCGTAGCTTTGGAC
TGGGCAGCTCTTCAGCTGCTTCTTCCAGTGATCTTGGGTCTTCAAGACAGTCAATCATAT
GTTTTGAGCGCCTTAGGAGTGGTAAGAAGGGTGACTTTGAGAAGTCCCAGATAAGCAGTA
CTATTAGTTGTCAAAGCATTGCTTCTGTGTCAGATATGTCAATTTGTAGCTCTTCAGCTT
CACTTTGCCCTCAGAGTGATGCAGTAGGAGATTCCTGTTTCCCAATTGACACTTTGGAAA
GCGGCACTTCAGGAACTCTGATCTCTTCTCAAGAAAATGATGATGCTTTTTGTAAGGATA
CTTTGCCAAGTGCTATGGAATGTCCGTCTTCTTCACAGTTTATTGCTGATGATGACAGTC
CCGGTGACATGAAAATCCAGAGCTACTTAAGTGAGGTAGGATATACAACAGTTGAGAACC
ATAGTGCTTGCAGAATGACTGACATGGATTGTACCAGTACAAATATGTATTCTTTAGATA
CTGAAATGCCAAGTGATACCCTAGAATCATCAGGCCCAGTGGAAAGTAGCATGCCTGAAA
CTGAAGAGGATGCTTACACTATCAGTCAGTGTAATAAAGGTAGTGCTCCAGAACATTCAA
GTGATGAGAATAACTTTGATAATATTCAAATGCAGTCTGAAATAGTTCAGGGTTCAGCGG
AGGAAAACAGATTGGATGATTGTTGCATGTCTGCTATCTCGGAGGAGGACGTATTGATTT
CTGGACAAGAAGATGACATAAGGAATCTTCCCAATGATGAAGAATTATGTGCGGAGGTAG
AAGGACCAAGGAAACAAATCCAGAGATGTTTTACATTGGAAGAAGCTGCTGATACAATTC
TCTTCTGTAGTTCCATTGTCCACGACCTTGCATACAAGGCTGCGACTATTGCGTTGGAAA
ACAAGAAGGAACCAAAGTTTGTGGACTCTATTCGTCCAACTGTTGCAATTGTTAGAGGAT
CTTTTGCTAAGGAAGAGAGTTTACCAAAGCTGCCTCACAGACGAACCCCAAACCGTAAGG
TCAAAAGGAAAAGATTGGAAGGCGAAACAACTACAACGGAAACTACAGAGAAAGACGTTG
TCGCGAATGACTCCCCCCCTGTATGTTCTGCATCGGGTATTACAAGGAATTCCGATAATA
TGAAGCCGCCAAAGCTGGAGTCCAAGTGCAACTGTATAATTATGTAACTCGGTCACATCC
AAGATTGAAATTCCTACATGCTTGGTTAACCCCGTCATCAGCAGCGATGGAGTTCAGCAC
AATGGATCTTCCGCTAGATTATTTTGCAAAGGTGCATTTGCTGTGTTTTAGGTGACAGAA
TGCACTGCCAGCTGCTATTCTTTTGTAAAGTCTTTTCTTCTCTTTTCTGCTTGTAATGAG
GTCCTTGCGGTTTGTC