Plant GARDEN
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All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d041064_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:94315496:94325421:1 gene:Zm00001d041064 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear pore complex protein NUP1
Sequence

ATGGAGTCCCAGCGATACAACTACGGCAGCGGCGCCGGCACCGGCGGCAAAATCCGCCGC
TACCCTCCCTCTCGCGCCGTGGCTGCGTCACCATATGCTCGACCGGCCACCGCCCCGACC
CACGCTCCTGGAACCGCCACGGCGGCGGTTTCGCATGAGGGCGGGTGGCTGTCCCGGATC
ATAGCCGCCGGCACCTCGCGATTCCTTCCCTCCTTGTTCAGCTTCAGCACGTCTCAACCT
CAGCAAGCCGCGCCGGCCCCGTCGCCAACGCGCGACCAGCTGCCAGTCGTCGAGCCGCCT
TCGCCGCTTCCCCCACCTTTAGTGGATGATCGTCCAGAATGTGAAGAAAACGGTGGAGTG
GCTGCCAATAATTTGTGTACTGAAAATCCTCAAAGTTGTACCAAGGAAGAGGAAGAAAAC
ATGCTAAGAAATTCTGATGACCATGGTGGAACGGCTCTTGAAGAATTATTGAAGCAGAGA
ACTTTCACGAGGAGTGAGTTTGAATATTTGGCCAATTTGTTATGGTCTAAAACTATTGGA
GCAAATTCACTGAAGCTAGAAGATGGTAACGTCAGGAAAATGATTGTTTATGACAAAGAA
AATGCCTCGGAATACTCCAACTTACCTCTTAATTTTTCCACTACAACATTCAGCGCTGAT
GATCAAGTTGCCACGCCTGCAGAAATTGCAAAAGCTTATATGGGTTTAAAATCTTCCAAG
GGTTCCCCTCTACGCCTTAGATTGCACGATCCCTCCTCTATGCCTATCACATCTATGGAA
GTTAGTATGTCACAAAAAGCTAAGCCTCCCACAATCCCACTTGCCCAAGGCTCAAGATTG
CATACTTCCAAAACTTCTGATTGTCTTGAAAGCAACTACACAACACCGAATGGAGTAATC
TGCAAAATGTCATCATCTCCTTATTTCAAGAGTGGTGTGTCTTCAAAGGAGCTATTTGGT
TCTGTATCTTCACATTACCAGACCTCAAATAGTGTTCATACTTTTGGCAGACAGGTTTTG
AAGAGGAAGAGTACTGTCAGCAATGAGTTTGTATCTGCTGGTCCGATACGCAGAATTCAT
CAAAGATACAACAGAACATCACCACTGTTGGAAACACAGCTGGGTTATCGTAGATACCCT
GTGGGCTATGGAAGCAAACTCGAAGGTTCTGAGCAATTGGCACGGACTCAAAAACGCCGG
TGTCTGGATAAAGTTGGTGATGCCAGTCTCGGTAGCGTAGAGGACAAAACTAATGTGAAC
TATCCTGGTCAGGTGCCAGAGAAGTCAGCTGAGATGGCAACTAAGATACTGAAGCAGCTT
GACACATTAGTACCTTCACAGAAGGAAAACACATCAGAAACAAAGCAGAAACATGAGAGT
GCCATATATTTCGAGGAAGATGTTTCTCGACAAAAGAAAGTACAAGCAGAGAGAGATCTT
TTGGAACCTTCTCCATCAGAAGTACCTGATGGTATTGCATCGAACAAATCAATCTCACAA
ATTACCTTGAACAAGGAAAAGCCTCCAGCCTTTTCTTCCAGAGGTAATGCTCCCAATCTG
GTATTATCTGATGAAATTGGACGAAGCAAAATGTCCACTCCAGGAAATGGCTTCACCTTC
CCTGCCCCGACTGTCAACAATGCCTACTCACAGGGCCCTCCAACACCTACATTGACATCT
CCTATACTAACAGTTGAAAAGCAGCCTTCAGTATTCTGCAGTGCTTCAGTCACTTCTGCA
CAAAGTGACCCTAGGATTTCAAAATCAGTTTTGGGAGGACCAGTTACACAGAAATTAGAA
AGCAAGTTAAATGGAGATAATCAACGAGTGCCTTCCAAGAATTCTGGACAAGTTGCATCT
TTCACAAGTAATCCTGTATTTAAGGTTGATGGCCCTGGGCATGCGTCAAACTCTGTTCTC
TCAGCTGTACAATCTTATAATACATCAACTGGCTCAGTTTCATTTCAAAGTGCTGGCTCT
TCTACCATCTCCACTAACTTAACTTCAAACATTACACAGAGCTGTTCAACTGGAGGCAGT
TTCACTTTCTCCAATACTCGTTTTGGTAGTTTATCGGCAACCTCAAATATGTTTGCAGCA
AAATCTTTAGCGTTGTCTTGTACAGCAAGCCCCGGTGCTTCTTTGGGTTTCCCTCCAGTT
CATACTGCAAGTTCTCCAGCTGCTCACCGCAAATCTGAAGCAGCAAATAGCAGTATCAGT
TTTAGTTCCATGCAGCAGTTTGGCATTGCAGGTTCTTCCACAGTGCAGGACAAATCCAAG
GCAGTAGACAGCAGTACCCCTTTTGGCTTTCCCCAGAAGTTTGACACCGTGAGTTCCGCT
TCAGAGGATATGTCCAAGGCAGACTCTCCTGAGCCGACATTTTTTTCTGGGAATCATAAT
GTGCAATCAGAAAATTGCAGTTCCCTGTTCACACAGAGTCCAGGAAATAATTTGAGTTCC
AAATCTTCAGAAAATTTGAACTCTGGAAGCTCGCATAGTTTTGCAGATTCACCAGTTGGT
TCAGCAACAATGTGCTCTAGCCCTTCGAATTCAAACTCTCTGTTTTCTTGGGCTGCTGGC
TCAGGTGCAAGAACTGCTCCACCATCTTCCCCTGCTACAAGCTCATCTTTTGCTTTTAGT
TCCAGTCCAGCATTTTCAGCACAACCAGTATTCGCCAGCAAATTGACTACACCTGCTTCA
CTTTCATATGGCTCACCAAATACTGGCCCTGCTACATCACCATTCAGCTCAATGCCAAGC
GCTGTATTTTCATTCACGTCAGCTACTCCTTCAATACCAAATCCATCACCCACAACACCA
ATATTTGGTGACCCTACTGTACAGATGAATGGAGGGAACATAGTTATTGACAGGAATGGG
TCCCCTTCCCCTGCAACTTCGCCATTTGGCTTGCCAAGCAGCTCTCCATCGACTCCAACT
TTCAGTACGCCTGCAACTCAGTTTGCTTCTAGTACATCAGGCTCACCTGGAGTTTTTGAA
ATTGGCAAGTATAGTCAAGCTTCTTCAGGTGGGTTCTCAATGGGCCCTAGTGGTGGCAAC
GACAAATCAAACAGAAGAATTGTCAGAGTTAAGAGAAGGAAATGA

Peptide Sequence

PEP ID

Zm00001d041064_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:94315496:94325421:1 gene:Zm00001d041064 transcript:Zm00001d041064_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear pore complex protein NUP1
Sequence

MESQRYNYGSGAGTGGKIRRYPPSRAVAASPYARPATAPTHAPGTATAAVSHEGGWLSRI
IAAGTSRFLPSLFSFSTSQPQQAAPAPSPTRDQLPVVEPPSPLPPPLVDDRPECEENGGV
AANNLCTENPQSCTKEEEENMLRNSDDHGGTALEELLKQRTFTRSEFEYLANLLWSKTIG
ANSLKLEDGNVRKMIVYDKENASEYSNLPLNFSTTTFSADDQVATPAEIAKAYMGLKSSK
GSPLRLRLHDPSSMPITSMEVSMSQKAKPPTIPLAQGSRLHTSKTSDCLESNYTTPNGVI
CKMSSSPYFKSGVSSKELFGSVSSHYQTSNSVHTFGRQVLKRKSTVSNEFVSAGPIRRIH
QRYNRTSPLLETQLGYRRYPVGYGSKLEGSEQLARTQKRRCLDKVGDASLGSVEDKTNVN
YPGQVPEKSAEMATKILKQLDTLVPSQKENTSETKQKHESAIYFEEDVSRQKKVQAERDL
LEPSPSEVPDGIASNKSISQITLNKEKPPAFSSRGNAPNLVLSDEIGRSKMSTPGNGFTF
PAPTVNNAYSQGPPTPTLTSPILTVEKQPSVFCSASVTSAQSDPRISKSVLGGPVTQKLE
SKLNGDNQRVPSKNSGQVASFTSNPVFKVDGPGHASNSVLSAVQSYNTSTGSVSFQSAGS
STISTNLTSNITQSCSTGGSFTFSNTRFGSLSATSNMFAAKSLALSCTASPGASLGFPPV
HTASSPAAHRKSEAANSSISFSSMQQFGIAGSSTVQDKSKAVDSSTPFGFPQKFDTVSSA
SEDMSKADSPEPTFFSGNHNVQSENCSSLFTQSPGNNLSSKSSENLNSGSSHSFADSPVG
SATMCSSPSNSNSLFSWAAGSGARTAPPSSPATSSSFAFSSSPAFSAQPVFASKLTTPAS
LSYGSPNTGPATSPFSSMPSAVFSFTSATPSIPNPSPTTPIFGDPTVQMNGGNIVIDRNG
SPSPATSPFGLPSSSPSTPTFSTPATQFASSTSGSPGVFEIGKYSQASSGGFSMGPSGGN
DKSNRRIVRVKRRK

Transcript Sequence

Transcript ID

Zm00001d041064_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:94315496:94325421:1 gene:Zm00001d041064 gene_biotype:protein_coding transcript_biotype:protein_coding description:Nuclear pore complex protein NUP1
Sequence

GCAGGCATACATCGCTGCGGGTGAAGTTCGGCTATCTGATTTGCCGCCCGCGATACGGCG
AAACCCTAGCTCCACAGCGCCGTTGCATGGAGTCCCAGCGATACAACTACGGCAGCGGCG
CCGGCACCGGCGGCAAAATCCGCCGCTACCCTCCCTCTCGCGCCGTGGCTGCGTCACCAT
ATGCTCGACCGGCCACCGCCCCGACCCACGCTCCTGGAACCGCCACGGCGGCGGTTTCGC
ATGAGGGCGGGTGGCTGTCCCGGATCATAGCCGCCGGCACCTCGCGATTCCTTCCCTCCT
TGTTCAGCTTCAGCACGTCTCAACCTCAGCAAGCCGCGCCGGCCCCGTCGCCAACGCGCG
ACCAGCTGCCAGTCGTCGAGCCGCCTTCGCCGCTTCCCCCACCTTTAGTGGATGATCGTC
CAGAATGTGAAGAAAACGGTGGAGTGGCTGCCAATAATTTGTGTACTGAAAATCCTCAAA
GTTGTACCAAGGAAGAGGAAGAAAACATGCTAAGAAATTCTGATGACCATGGTGGAACGG
CTCTTGAAGAATTATTGAAGCAGAGAACTTTCACGAGGAGTGAGTTTGAATATTTGGCCA
ATTTGTTATGGTCTAAAACTATTGGAGCAAATTCACTGAAGCTAGAAGATGGTAACGTCA
GGAAAATGATTGTTTATGACAAAGAAAATGCCTCGGAATACTCCAACTTACCTCTTAATT
TTTCCACTACAACATTCAGCGCTGATGATCAAGTTGCCACGCCTGCAGAAATTGCAAAAG
CTTATATGGGTTTAAAATCTTCCAAGGGTTCCCCTCTACGCCTTAGATTGCACGATCCCT
CCTCTATGCCTATCACATCTATGGAAGTTAGTATGTCACAAAAAGCTAAGCCTCCCACAA
TCCCACTTGCCCAAGGCTCAAGATTGCATACTTCCAAAACTTCTGATTGTCTTGAAAGCA
ACTACACAACACCGAATGGAGTAATCTGCAAAATGTCATCATCTCCTTATTTCAAGAGTG
GTGTGTCTTCAAAGGAGCTATTTGGTTCTGTATCTTCACATTACCAGACCTCAAATAGTG
TTCATACTTTTGGCAGACAGGTTTTGAAGAGGAAGAGTACTGTCAGCAATGAGTTTGTAT
CTGCTGGTCCGATACGCAGAATTCATCAAAGATACAACAGAACATCACCACTGTTGGAAA
CACAGCTGGGTTATCGTAGATACCCTGTGGGCTATGGAAGCAAACTCGAAGGTTCTGAGC
AATTGGCACGGACTCAAAAACGCCGGTGTCTGGATAAAGTTGGTGATGCCAGTCTCGGTA
GCGTAGAGGACAAAACTAATGTGAACTATCCTGGTCAGGTGCCAGAGAAGTCAGCTGAGA
TGGCAACTAAGATACTGAAGCAGCTTGACACATTAGTACCTTCACAGAAGGAAAACACAT
CAGAAACAAAGCAGAAACATGAGAGTGCCATATATTTCGAGGAAGATGTTTCTCGACAAA
AGAAAGTACAAGCAGAGAGAGATCTTTTGGAACCTTCTCCATCAGAAGTACCTGATGGTA
TTGCATCGAACAAATCAATCTCACAAATTACCTTGAACAAGGAAAAGCCTCCAGCCTTTT
CTTCCAGAGGTAATGCTCCCAATCTGGTATTATCTGATGAAATTGGACGAAGCAAAATGT
CCACTCCAGGAAATGGCTTCACCTTCCCTGCCCCGACTGTCAACAATGCCTACTCACAGG
GCCCTCCAACACCTACATTGACATCTCCTATACTAACAGTTGAAAAGCAGCCTTCAGTAT
TCTGCAGTGCTTCAGTCACTTCTGCACAAAGTGACCCTAGGATTTCAAAATCAGTTTTGG
GAGGACCAGTTACACAGAAATTAGAAAGCAAGTTAAATGGAGATAATCAACGAGTGCCTT
CCAAGAATTCTGGACAAGTTGCATCTTTCACAAGTAATCCTGTATTTAAGGTTGATGGCC
CTGGGCATGCGTCAAACTCTGTTCTCTCAGCTGTACAATCTTATAATACATCAACTGGCT
CAGTTTCATTTCAAAGTGCTGGCTCTTCTACCATCTCCACTAACTTAACTTCAAACATTA
CACAGAGCTGTTCAACTGGAGGCAGTTTCACTTTCTCCAATACTCGTTTTGGTAGTTTAT
CGGCAACCTCAAATATGTTTGCAGCAAAATCTTTAGCGTTGTCTTGTACAGCAAGCCCCG
GTGCTTCTTTGGGTTTCCCTCCAGTTCATACTGCAAGTTCTCCAGCTGCTCACCGCAAAT
CTGAAGCAGCAAATAGCAGTATCAGTTTTAGTTCCATGCAGCAGTTTGGCATTGCAGGTT
CTTCCACAGTGCAGGACAAATCCAAGGCAGTAGACAGCAGTACCCCTTTTGGCTTTCCCC
AGAAGTTTGACACCGTGAGTTCCGCTTCAGAGGATATGTCCAAGGCAGACTCTCCTGAGC
CGACATTTTTTTCTGGGAATCATAATGTGCAATCAGAAAATTGCAGTTCCCTGTTCACAC
AGAGTCCAGGAAATAATTTGAGTTCCAAATCTTCAGAAAATTTGAACTCTGGAAGCTCGC
ATAGTTTTGCAGATTCACCAGTTGGTTCAGCAACAATGTGCTCTAGCCCTTCGAATTCAA
ACTCTCTGTTTTCTTGGGCTGCTGGCTCAGGTGCAAGAACTGCTCCACCATCTTCCCCTG
CTACAAGCTCATCTTTTGCTTTTAGTTCCAGTCCAGCATTTTCAGCACAACCAGTATTCG
CCAGCAAATTGACTACACCTGCTTCACTTTCATATGGCTCACCAAATACTGGCCCTGCTA
CATCACCATTCAGCTCAATGCCAAGCGCTGTATTTTCATTCACGTCAGCTACTCCTTCAA
TACCAAATCCATCACCCACAACACCAATATTTGGTGACCCTACTGTACAGATGAATGGAG
GGAACATAGTTATTGACAGGAATGGGTCCCCTTCCCCTGCAACTTCGCCATTTGGCTTGC
CAAGCAGCTCTCCATCGACTCCAACTTTCAGTACGCCTGCAACTCAGTTTGCTTCTAGTA
CATCAGGCTCACCTGGAGTTTTTGAAATTGGCAAGTATAGTCAAGCTTCTTCAGGTGGGT
TCTCAATGGGCCCTAGTGGTGGCAACGACAAATCAAACAGAAGAATTGTCAGAGTTAAGA
GAAGGAAATGAAATACCAATATTTTTCAAGTTGCTCTGAGCATTTATAAGACTAAGGCAA
TCAGCACGTAGAACTTTTTGTTTCACATCATTTGTCTGCGGTGGCAATGAGAATGAGATG
CCATTCTTAAATTGATGATCACAATTCTGGCACAGTAGCAGCAATGGAACTAGCCTTTTC
GCGATACGGTCGCCCATGACATTTTGTTGTACGGTTTGTCACAACAATGCTATAATGAAA
TATATAGGTACTTCTCCAACTTGTATTAAACATGTTCAGCGATCAAGCTGCCCTTTTTTT
GTGCAATTGGATCCTGAAACTAAATTTCATCCTAATAATAATAATTTAGGCACGCCAATT
ATT