Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d040988_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:88431308:88434145:-1 gene:Zm00001d040988 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-dependent RNA polymerase6 description:RNA-dependent RNA polymerase 6
Sequence	ATGGGATCGCTCCGGGGCGCGGCAGCCTCCTCCGCGGCGCCGCGCGCGGGCGACCTGGTG ACCACGCAGGTTAGCCTTGGTGGATTTGATGCCACCGTCAAGGCGCTCGATCTCGCCGAC TTCCTCGAGTTGAATGCGGGCTCGGTCTGGCGCTGCCGCCTCAAGACCTCCTGGACTCCG CCGGACGCCTATCCCGACTTCCTTCTCCCCACCGTCACCTCCGCCGCCGCGCCGCCGCCA CAGTACGATCGCGTGCCTCCGCACGCCTTCGTCCACTTTGCGCGCCCGGAGGGCGCGCGC GCCGCCGCCGACGCAGCGGGCCGATCCGAGCTCATCCTCTCCGGCAAACCCCTGCGCGCC GCCTCCGCACAGGACAGCTCCCTTCGGGCATCCCGCCGCCGTAGTGTCTCGCCATTCCGC TTCCCTGGCTCGCGCCTCGAGGTCGGGGATCTCCCGGCCTCGGACGCCTTCATCGCCGCC TGGCGCGGCCCGGCCTCTGGGCTCGAGTTCTCCGTCGACCCGTTCGACGGGTCTTGCCAC TTCATCTTCGCCCGCGACACCGCTTTCAAAGTCCGGGAGTTCCGCGAGTCTGTGGTGATG CGCTGCGACGTCAAGCTCCAGTTCCCCGTCCGCGATGTTGCGGAAGTCAGGGTGTTCCGG CTCGACTGCTCGCTGCTGATCCGGCTATCGGCCGCACCGCTGGTCTGTTACCGCACGGCG GATGACGACATCCACGTGTCCGTGCCGTTCGACCTGCTCGACGACGATGACCCGTGGATA CGGACCACGGACATCACTCCAAGTGGTGCGATTGGGCGGTGCGGTGCGTATAGAATCACA TTCTCGCCGCGGTTCTGGCCAAAGATGGAACGCGCGCTGACGTACATGAGGGATAGGAGG GTGGCGATCCTTGATTGCGTTGGAGGGTGGGGGGCCAGGAGGGGGCTCACCGTGCGTGAT GAGCCTGAGTTTGGGGAGCGGATGCAGGACCTGTTCTTCTGCGTGCAGCACGCCGAGGGT CTCAAGTTTCCGGTGTTGTTCCTCGTGAATGCTCTGGTGCACAAGGGAGTAATAAGTCAA CACCACCTCACGCCTGAATTCTTCGGTTTGCTCCAGAGGAAGGAGGATGATGTGAATGTG GCTGCCTTGAGGGAATTTTGGGGGGACAAATTTCCAGTTTTTGATGCATGTGGGAGGCTG AAGAATCTGCAGGATAGGGTTGCCAGGTACCTGAAACATCTTCGCAACAAGATTGGGGAT GTCAATTCTGAGGTGAGGAGGCTGGTAATCACGCCCACCAAGGCTTATTGCATGCCACCA GAAGTGGAGCGCTCTAATCGCGTCATCCGGCATTATAGTGAAGTCTCAGACCGGTTTCTG AGGGTTACTTTTATGGATGAGAGAATGCAGATGCTCAACAGTAATGTGCTGAATTTCTCT GCTGCACAAATCGTCAAAGATTTGATGTCAAACTCGTTCCTGCATAAGACAACAGTGTAC AAGCGTGTTAAAACGTTTTTGACAGAGGGATTCCACATGTGTGGCAGGAAGTACTCGTTT CTTGCATTCTCATCTAACCAGCTGAGGGACAGGTCAGCATGGTTCTTCGCAGAGGACAGA ACGACAACAGTGGAAACCATTAGGAAATGGATGGGGCGGTTCACAAGTAAGAATGTAGCA AAGCATGCCGCTCGGATGGGGCAGTGCTTCTCCTCTACATATGCTACGGTGGTGCTGCAG CCGCATGAGGTAAATGAGTGTCTTGATGAAGTTGAACATAACGGGTACATTTTCTCTGAT GGAATTGGCAAGATTACGTGCGACCTTGCACTCGAAGTTGCTCAGAAGCTGCAATTGACA GATAATCCCCCATCTGCTTACCAGATTAGGTATGCAGGCTTCAAGGGTGTTATATCTGTC TGGGAAGGAAAAAATGATGGGATACGACTTTCCCTGAGGCCGAGCATGCACAAGTTTGAG TCTAACCATACTGTGTTAGAGGTGGTCTCGTGGACAAAGTTTCAGCCAGGATTCTTAAAT CGTCAGATTATTACATTACTGTCCTCCTTGAATGTCCCGGATGCTATCTTTGCTCAAATG CAGGAAGCCATGTTATCTAATCTCAACAATATTTTGTCAGACTCTGATGTTGCTTTTGAC ATTGTAACCGCCTCTTGTGCTGAGCAAGGAACCACTGCAGCACTGATGTTGAGTGCTGGC ATTTCACCTGGAACTGAGCCACACCTGAAAGCAATGCTGTTAGCTATAAGGTCCTCACAG CTGCTAGGTCTTTTGGAGAAGACAAGGATTTTTGTGCCCAAGGGAAGGTGGTTGATGGGC TGCCTTGATGAACTTGGGATCCTTGAGCAAGGGCAGTGCTTTATCCGGGCATCATCTCCA TCACTCAATAATTGTCTGGTGAAGTATGGATCAAGATTGTCTGCAGCAAACACAAATGCA GAGACCATTCTGGGTACTATCGTAATGGCAAAGAATCCATGCCTTCATCCAGGGGATGTC CGAATCCTTGAAGCTGTTGATGTGCCTGAACTGCATCACCTTGTTGATTGCTTGGTCTTC CCCAAGAAAGGTGAGAGGCCGCACGCGAATGAAGCATCTGGGAGTGATCTTGATGGGGAT CTATACTTCGTAACATGGGATGAAAACCTTATACCACCTGGTAAAAAGAGTTGGAACCCT ATGGACTACTCCCCAGCTGAAGCAAAACAACTGCCACGCGCAGTATCCCAACATGTGAGT CCAACTATTCTTGGAATTTCTTCCCTTGAAAGTTCAATATATGTATGCATTCCCTCAAAC ATTAGTTTAATGTTATGA

Peptide Sequence

PEP ID	Zm00001d040988_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:88431308:88434145:-1 gene:Zm00001d040988 transcript:Zm00001d040988_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-dependent RNA polymerase6 description:RNA-dependent RNA polymerase 6
Sequence	MGSLRGAAASSAAPRAGDLVTTQVSLGGFDATVKALDLADFLELNAGSVWRCRLKTSWTP PDAYPDFLLPTVTSAAAPPPQYDRVPPHAFVHFARPEGARAAADAAGRSELILSGKPLRA ASAQDSSLRASRRRSVSPFRFPGSRLEVGDLPASDAFIAAWRGPASGLEFSVDPFDGSCH FIFARDTAFKVREFRESVVMRCDVKLQFPVRDVAEVRVFRLDCSLLIRLSAAPLVCYRTA DDDIHVSVPFDLLDDDDPWIRTTDITPSGAIGRCGAYRITFSPRFWPKMERALTYMRDRR VAILDCVGGWGARRGLTVRDEPEFGERMQDLFFCVQHAEGLKFPVLFLVNALVHKGVISQ HHLTPEFFGLLQRKEDDVNVAALREFWGDKFPVFDACGRLKNLQDRVARYLKHLRNKIGD VNSEVRRLVITPTKAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFS AAQIVKDLMSNSFLHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDR TTTVETIRKWMGRFTSKNVAKHAARMGQCFSSTYATVVLQPHEVNECLDEVEHNGYIFSD GIGKITCDLALEVAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKFE SNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAFD IVTASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWLMG CLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETILGTIVMAKNPCLHPGDV RILEAVDVPELHHLVDCLVFPKKGERPHANEASGSDLDGDLYFVTWDENLIPPGKKSWNP MDYSPAEAKQLPRAVSQHVSPTILGISSLESSIYVCIPSNISLML

Transcript Sequence

Transcript ID	Zm00001d040988_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:88431308:88434145:-1 gene:Zm00001d040988 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:RNA-dependent RNA polymerase6 description:RNA-dependent RNA polymerase 6
Sequence	ATGGGATCGCTCCGGGGCGCGGCAGCCTCCTCCGCGGCGCCGCGCGCGGGCGACCTGGTG ACCACGCAGGTTAGCCTTGGTGGATTTGATGCCACCGTCAAGGCGCTCGATCTCGCCGAC TTCCTCGAGTTGAATGCGGGCTCGGTCTGGCGCTGCCGCCTCAAGACCTCCTGGACTCCG CCGGACGCCTATCCCGACTTCCTTCTCCCCACCGTCACCTCCGCCGCCGCGCCGCCGCCA CAGTACGATCGCGTGCCTCCGCACGCCTTCGTCCACTTTGCGCGCCCGGAGGGCGCGCGC GCCGCCGCCGACGCAGCGGGCCGATCCGAGCTCATCCTCTCCGGCAAACCCCTGCGCGCC GCCTCCGCACAGGACAGCTCCCTTCGGGCATCCCGCCGCCGTAGTGTCTCGCCATTCCGC TTCCCTGGCTCGCGCCTCGAGGTCGGGGATCTCCCGGCCTCGGACGCCTTCATCGCCGCC TGGCGCGGCCCGGCCTCTGGGCTCGAGTTCTCCGTCGACCCGTTCGACGGGTCTTGCCAC TTCATCTTCGCCCGCGACACCGCTTTCAAAGTCCGGGAGTTCCGCGAGTCTGTGGTGATG CGCTGCGACGTCAAGCTCCAGTTCCCCGTCCGCGATGTTGCGGAAGTCAGGGTGTTCCGG CTCGACTGCTCGCTGCTGATCCGGCTATCGGCCGCACCGCTGGTCTGTTACCGCACGGCG GATGACGACATCCACGTGTCCGTGCCGTTCGACCTGCTCGACGACGATGACCCGTGGATA CGGACCACGGACATCACTCCAAGTGGTGCGATTGGGCGGTGCGGTGCGTATAGAATCACA TTCTCGCCGCGGTTCTGGCCAAAGATGGAACGCGCGCTGACGTACATGAGGGATAGGAGG GTGGCGATCCTTGATTGCGTTGGAGGGTGGGGGGCCAGGAGGGGGCTCACCGTGCGTGAT GAGCCTGAGTTTGGGGAGCGGATGCAGGACCTGTTCTTCTGCGTGCAGCACGCCGAGGGT CTCAAGTTTCCGGTGTTGTTCCTCGTGAATGCTCTGGTGCACAAGGGAGTAATAAGTCAA CACCACCTCACGCCTGAATTCTTCGGTTTGCTCCAGAGGAAGGAGGATGATGTGAATGTG GCTGCCTTGAGGGAATTTTGGGGGGACAAATTTCCAGTTTTTGATGCATGTGGGAGGCTG AAGAATCTGCAGGATAGGGTTGCCAGGTACCTGAAACATCTTCGCAACAAGATTGGGGAT GTCAATTCTGAGGTGAGGAGGCTGGTAATCACGCCCACCAAGGCTTATTGCATGCCACCA GAAGTGGAGCGCTCTAATCGCGTCATCCGGCATTATAGTGAAGTCTCAGACCGGTTTCTG AGGGTTACTTTTATGGATGAGAGAATGCAGATGCTCAACAGTAATGTGCTGAATTTCTCT GCTGCACAAATCGTCAAAGATTTGATGTCAAACTCGTTCCTGCATAAGACAACAGTGTAC AAGCGTGTTAAAACGTTTTTGACAGAGGGATTCCACATGTGTGGCAGGAAGTACTCGTTT CTTGCATTCTCATCTAACCAGCTGAGGGACAGGTCAGCATGGTTCTTCGCAGAGGACAGA ACGACAACAGTGGAAACCATTAGGAAATGGATGGGGCGGTTCACAAGTAAGAATGTAGCA AAGCATGCCGCTCGGATGGGGCAGTGCTTCTCCTCTACATATGCTACGGTGGTGCTGCAG CCGCATGAGGTAAATGAGTGTCTTGATGAAGTTGAACATAACGGGTACATTTTCTCTGAT GGAATTGGCAAGATTACGTGCGACCTTGCACTCGAAGTTGCTCAGAAGCTGCAATTGACA GATAATCCCCCATCTGCTTACCAGATTAGGTATGCAGGCTTCAAGGGTGTTATATCTGTC TGGGAAGGAAAAAATGATGGGATACGACTTTCCCTGAGGCCGAGCATGCACAAGTTTGAG TCTAACCATACTGTGTTAGAGGTGGTCTCGTGGACAAAGTTTCAGCCAGGATTCTTAAAT CGTCAGATTATTACATTACTGTCCTCCTTGAATGTCCCGGATGCTATCTTTGCTCAAATG CAGGAAGCCATGTTATCTAATCTCAACAATATTTTGTCAGACTCTGATGTTGCTTTTGAC ATTGTAACCGCCTCTTGTGCTGAGCAAGGAACCACTGCAGCACTGATGTTGAGTGCTGGC ATTTCACCTGGAACTGAGCCACACCTGAAAGCAATGCTGTTAGCTATAAGGTCCTCACAG CTGCTAGGTCTTTTGGAGAAGACAAGGATTTTTGTGCCCAAGGGAAGGTGGTTGATGGGC TGCCTTGATGAACTTGGGATCCTTGAGCAAGGGCAGTGCTTTATCCGGGCATCATCTCCA TCACTCAATAATTGTCTGGTGAAGTATGGATCAAGATTGTCTGCAGCAAACACAAATGCA GAGACCATTCTGGGTACTATCGTAATGGCAAAGAATCCATGCCTTCATCCAGGGGATGTC CGAATCCTTGAAGCTGTTGATGTGCCTGAACTGCATCACCTTGTTGATTGCTTGGTCTTC CCCAAGAAAGGTGAGAGGCCGCACGCGAATGAAGCATCTGGGAGTGATCTTGATGGGGAT CTATACTTCGTAACATGGGATGAAAACCTTATACCACCTGGTAAAAAGAGTTGGAACCCT ATGGACTACTCCCCAGCTGAAGCAAAACAACTGCCACGCGCAGTATCCCAACATGTGAGT CCAACTATTCTTGGAATTTCTTCCCTTGAAAGTTCAATATATGTATGCATTCCCTCAAAC ATTAGTTTAATGTTATGA