Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040818_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:67922615:67928056:1 gene:Zm00001d040818 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acyltransferase-like protein chloroplastic
Sequence

ATGCAAATTCTCGTCTCCATGCCGTGCAAGCCGAGGTTCTACTTCTTGCCAGGTCCGTGG
CTACAGTATCTGCTATCTATACTCCATAGTTTTTGTAGTCCGATACGCCGACTTCTAGCC
TCGTGTTTGGGTCCAGAGCACAGATCAATAATGTTACCTGTATTCAGTGGTAAGGACAAT
CTTCTACCAAGCGGAGAAGAAGCGGATCGACTCTTCAAGGCACTGAAAAACTGCAGAGTT
CGATACTTCAAGGACAATGGCCATACACTACTGCTGGTACAAAGCATCACTCTTAATAGC
TCTCCTGTTATCCCTATCTCGCTATCTGATTATACATATATGTATGTATGCAAAAGGCAG
TGTATTTCTTCAGCTATCATTTTTGTGCCTGCGCAGGAGGATGGCGTCAACCTGTTAACT
GTCATAAAAGGAGCGAACATGTATCGGCGTGGAAGGCAAAGGGATTCTGTAACCGATTAT
CTCCCGCCTACTCTAAGTGAATTCAGGCAAACATTTGATGTGGATCACAGGCTGTTCCAC
CTTGCACTGAGCCCAGTCATGATGTCCACCCTGAAGGATGGGAAAATCGTCCGCGGGCTT
GCCGGTGTCCCTGACAAAGGCCCAGTCTTGTTCGTGGGCTACCACGCGCTCATGGGCATT
GAGCTGAGTCCTCTGTACGAGGAGTTCCTGAGGGAGAAGAGGACAGTCGTCCGCGGCATG
GCGCACCCGTTCCTGTTTGGGAAAAAGTTCGAGTCGTCGCGCCAGGAGACGTCCCGTTTC
GACACTGTTTCTATGTACGGTGGACTGCCGGTGACCCCGATCAATATGTACAGGTTGTTC
CAGAGGAACCAATTTGTTCTGCTCTACCCCGGCGGCGTTCGGGAAGCTCTGCACAGGAAG
GGTGAAGAGTATAAGTTGTTCTGGCCAGATCAGCCAGAATTCGTAAGGATGGCGGCGCGC
TTTGGTGTAACTATCATACCCTTTGGGTGTGTTGGAGAAGACGACGTTCTCGAGTTGGTT
CTGGACTACAACGATCAGAAGAACATTCCCGGGCTCCGGGAATGGATACAGTCGATCAAC
AAAGAAGCCGAGAGAGTGAGGGACAGCGTAAAAGGAGAGGATGGGAACCAGGACATGTAC
CTGCCAGCTCTTCTCCCAAAAGTGCCTGGCCGATTCTACTACCTGTTCGGGCAGCCGATT
GAGATGAAAGGGATGGGCAACCTTGTCAGAGATAGGAAGAGCGCGAACGAGGTGTATCTA
CGCATCAAATCGCAGGTGGAGGAGATCATGTCGTATCTCAAGAGGAAGAGGGAGGAAGAC
CCTTACAGGAGCCTACCGCAGCGTGCACTGTACCAGGCAACATGGGGCGCCTCCGCTCAG
GTCCCCACTTTTGAGCCATGA

Peptide Sequence

PEP ID

Zm00001d040818_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:67922615:67928056:1 gene:Zm00001d040818 transcript:Zm00001d040818_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acyltransferase-like protein chloroplastic
Sequence

MQILVSMPCKPRFYFLPGPWLQYLLSILHSFCSPIRRLLASCLGPEHRSIMLPVFSGKDN
LLPSGEEADRLFKALKNCRVRYFKDNGHTLLLVQSITLNSSPVIPISLSDYTYMYVCKRQ
CISSAIIFVPAQEDGVNLLTVIKGANMYRRGRQRDSVTDYLPPTLSEFRQTFDVDHRLFH
LALSPVMMSTLKDGKIVRGLAGVPDKGPVLFVGYHALMGIELSPLYEEFLREKRTVVRGM
AHPFLFGKKFESSRQETSRFDTVSMYGGLPVTPINMYRLFQRNQFVLLYPGGVREALHRK
GEEYKLFWPDQPEFVRMAARFGVTIIPFGCVGEDDVLELVLDYNDQKNIPGLREWIQSIN
KEAERVRDSVKGEDGNQDMYLPALLPKVPGRFYYLFGQPIEMKGMGNLVRDRKSANEVYL
RIKSQVEEIMSYLKRKREEDPYRSLPQRALYQATWGASAQVPTFEP

Transcript Sequence

Transcript ID

Zm00001d040818_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:67922615:67928056:1 gene:Zm00001d040818 gene_biotype:protein_coding transcript_biotype:protein_coding description:Acyltransferase-like protein chloroplastic
Sequence

GCAGCTACGCTTTACTCCCTTCCCCTGCTTCGTCCTCGTTTCTCCTCGAACCCACCCAGC
AGCGCCTTCTTCCTTCTTCCCGCCCAACCTCGGCCATGCCCGTAGCGGCGCTCCGTCCTC
CCCCGGTCGCTGTCGGCGCGGGACGCCGCAGCGCCCGACTCCAGGCGCGGTTCGCCCTCC
GCGCGAGCTCCCTCGAGGCGTCGGCGGCAGTGACGGTGACAGTGAACGGGTCTGCAGAGG
CCGCGGTGGAGAGGAAGGAGAAGGTGCAGGAGGATAAGGACAACGAGGGACTGCCGGTGA
AGGAGGAGCAGGAGAGGGGGCTGGAGGTCCTCTACGACGACGGCTTCGGCTCCGTGACCG
TCAAGGACTACTTCGCGGCGGCCAAGGTCCTGTGCCGGGACGACGGTGGGCCGCCGCGCT
GGTTCTCTCCCGTCGAGTGCGGCCACCCGGCCGTGGACCAAGCGCCGCTGCTGCTCTTCT
TGCCAGGAATGGATGGCGTCGGCACGGGACTCATCCTGCACCACAAGTCTTTGGGCAAAG
TGTTCGAGGTTCGGTGCTTGCATATACCAGTCAATGATCGTACACCATTTGAAGGACTAG
TACAAATCGTTGAAAATTTGATCAAGCACGAGCATGATTTATCCCCGGACAGACCGATAT
ATCTTGTCGGAGATTCATTTGGCGGATCCCTGGCACTGGCAGTGGCAGCTCGTAATCCGC
AGATTGATTTGGTTCTCATACTAGTAAACCCAGCTACATCATTTGCAAAGACTCCATTGC
AGCCAGTATTGCCTCTACTGGAATCAGTGCCAAGCGAGTTTCATGCTACAGTGCCGTATC
TTCTCAGTTTTGTCATGGGTGACCCACTGAAGATGGCTGCAGTTAGCATTGAAAACAACC
TATCTCCTCCAGAAACTCTGCAGAAATTGTCAGACAGTCTCACATCAATGCTTCCTTTGC
TTTCAGAACTGTCTGATATTATACCAAGGGATACTCTTCTATGGAAGCTCAAACTTCTCA
AGGCAGGAGCAGCCTATGCAAATTCTCGTCTCCATGCCGTGCAAGCCGAGGTTCTACTTC
TTGCCAGGTCCGTGGCTACAGTATCTGCTATCTATACTCCATAGTTTTTGTAGTCCGATA
CGCCGACTTCTAGCCTCGTGTTTGGGTCCAGAGCACAGATCAATAATGTTACCTGTATTC
AGTGGTAAGGACAATCTTCTACCAAGCGGAGAAGAAGCGGATCGACTCTTCAAGGCACTG
AAAAACTGCAGAGTTCGATACTTCAAGGACAATGGCCATACACTACTGCTGGTACAAAGC
ATCACTCTTAATAGCTCTCCTGTTATCCCTATCTCGCTATCTGATTATACATATATGTAT
GTATGCAAAAGGCAGTGTATTTCTTCAGCTATCATTTTTGTGCCTGCGCAGGAGGATGGC
GTCAACCTGTTAACTGTCATAAAAGGAGCGAACATGTATCGGCGTGGAAGGCAAAGGGAT
TCTGTAACCGATTATCTCCCGCCTACTCTAAGTGAATTCAGGCAAACATTTGATGTGGAT
CACAGGCTGTTCCACCTTGCACTGAGCCCAGTCATGATGTCCACCCTGAAGGATGGGAAA
ATCGTCCGCGGGCTTGCCGGTGTCCCTGACAAAGGCCCAGTCTTGTTCGTGGGCTACCAC
GCGCTCATGGGCATTGAGCTGAGTCCTCTGTACGAGGAGTTCCTGAGGGAGAAGAGGACA
GTCGTCCGCGGCATGGCGCACCCGTTCCTGTTTGGGAAAAAGTTCGAGTCGTCGCGCCAG
GAGACGTCCCGTTTCGACACTGTTTCTATGTACGGTGGACTGCCGGTGACCCCGATCAAT
ATGTACAGGTTGTTCCAGAGGAACCAATTTGTTCTGCTCTACCCCGGCGGCGTTCGGGAA
GCTCTGCACAGGAAGGGTGAAGAGTATAAGTTGTTCTGGCCAGATCAGCCAGAATTCGTA
AGGATGGCGGCGCGCTTTGGTGTAACTATCATACCCTTTGGGTGTGTTGGAGAAGACGAC
GTTCTCGAGTTGGTTCTGGACTACAACGATCAGAAGAACATTCCCGGGCTCCGGGAATGG
ATACAGTCGATCAACAAAGAAGCCGAGAGAGTGAGGGACAGCGTAAAAGGAGAGGATGGG
AACCAGGACATGTACCTGCCAGCTCTTCTCCCAAAAGTGCCTGGCCGATTCTACTACCTG
TTCGGGCAGCCGATTGAGATGAAAGGGATGGGCAACCTTGTCAGAGATAGGAAGAGCGCG
AACGAGGTGTATCTACGCATCAAATCGCAGGTGGAGGAGATCATGTCGTATCTCAAGAGG
AAGAGGGAGGAAGACCCTTACAGGAGCCTACCGCAGCGTGCACTGTACCAGGCAACATGG
GGCGCCTCCGCTCAGGTCCCCACTTTTGAGCCATGAAGATTGGGAGTAGGGAAGGGCGTC
TGCGAGCGGACTGCAATTCTTTGACAAGATGCAATGCGTTCTCATTTCTGAGGAGATCTC
CCTCCCTCATACGCTGATTACATATACGGACTACGGACTAGTATACCGCAAATATTGTAC
ATTTTTAGGAAAAATATGAAATGATGTTTTTAAACAAAAAAAACGCACTC