Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040725_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:60285876:60288098:1 gene:Zm00001d040725 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

ATGAGGCCGGCGCCGGAGACAAGCACGCGGCGGCCGCAGCTGCGTCGCCGTCGTCCAGTG
CCATTGGTGACGGTGGCCGTGTCTTTGGCGCTCATCTCGCTGGCGTGCCTTCCTGTCTTC
GCGGATGCAAGCAGAGCGCTGCACCGCGACCGGGAGGAGCACCGGAGGCAGCACCACCGC
ACGGAGGACAAGAAGAGCCGCGTCTCGCTCCCTCCCGACGCTGACGGCGACTCTCCGCCC
GAGCCTCCGGACTCCGGCGGCGCGCCGCCGCCTGCCGACGACAGCGACTGCGGCAACGTG
TTCGACGTGAGGGCGTTCGGCGCGTCGGGCGACGGCTCGTGCGTCGACGACGACACGGCC
GCGTTCCGCGCGGCGTGGAAGGCGGCGTGCTCCTCCGACTCCGCCGCGGCCACGCTGCTG
GTGCCGTCGGACGGCGTGTTCACCATCGCATCCACCATCTTCTCCGGGCCGTGCAAGCCC
GACCTCACCTTCCAAATCGATGGCGTCCTCATGCCGCCGGACGGCCCGGCGAGCTGGCCG
GCGACGGACAGCCGGAAACAGTGGATAGTCTTCTACAAGGCCGATCGCTTGACGCTGGCG
GGGGAAGGCACCATCGAAGGCAACGGTGAGGAGTGGTGGGATCTGCCGTGCAAGCCTCAC
AGGGGTCCAAACGGATCGACGCTGCGCGGACCATGTGACAGCCCCGCGCTCATACGATTC
TTCTCGAGCAATGACGTGACGGTATGCGGCCTGCGGATCGAGAACAGCCCGCAGTTCCAC
CTCAGGTTCGACGACTGCGAGCGCGTGCGCGTCGACGGCCTCTTCGTCAGCTCGCCGGCG
TCCAGCCCCAACACGGACGGCGTCCACGTCGAGAACACCAAGTCCGTCCAGATCCTCAAC
TCTAGGATCTACAACGGCGACGACTGCGTCTCCATCGGCGCCGGATGCTCCGATGTCCAC
GTCGAGAACATAACATGCGGCCACGGCCATGGAATTAGCATCGGCAGCCTGGGTGTCCAC
AACACCCACGCCTGCGTGTCCAACGTCACGGTCCGGAACGTGCGGATACTCGACTCCGAC
AACGGCGTCCGGATCAAGACGTGGCAGGGCGGCGCCGGCGCGGTGTCGGCGGTCGAGTTC
ACCGGCGTGCAGATGCAGAACGTGAAGAACTGCATCGTCATCGACCAGTACTACTGCCTC
GGCCACGGGTGCGCCAACCAGACCTCCGCGGTGCGCGTGGCCGGCGTCGCGTACAGGGAC
ATCCACGGCACGTACAACCCGCAGGCCGGCGCGCCCATCCGCCTCGCGTGCAGCGACGCC
GTCGCCTGCACGGACATCACCATGTCTGGCGTCGAGCTGCTGCCGGCCGGCGGGGACGAC
GGAGCACTGCTCGCCGACCCCTACTGCTGGAACGCGTACGGGGTCATGGAGACGCTCACG
CTGCCACCGGTGTACTGCTTGCTGGAGGGCAGCCCGGAGTCTCTCCAGGATCCGCTCACC
AGTTGCTGA

Peptide Sequence

PEP ID

Zm00001d040725_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:60285876:60288098:1 gene:Zm00001d040725 transcript:Zm00001d040725_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

MRPAPETSTRRPQLRRRRPVPLVTVAVSLALISLACLPVFADASRALHRDREEHRRQHHR
TEDKKSRVSLPPDADGDSPPEPPDSGGAPPPADDSDCGNVFDVRAFGASGDGSCVDDDTA
AFRAAWKAACSSDSAAATLLVPSDGVFTIASTIFSGPCKPDLTFQIDGVLMPPDGPASWP
ATDSRKQWIVFYKADRLTLAGEGTIEGNGEEWWDLPCKPHRGPNGSTLRGPCDSPALIRF
FSSNDVTVCGLRIENSPQFHLRFDDCERVRVDGLFVSSPASSPNTDGVHVENTKSVQILN
SRIYNGDDCVSIGAGCSDVHVENITCGHGHGISIGSLGVHNTHACVSNVTVRNVRILDSD
NGVRIKTWQGGAGAVSAVEFTGVQMQNVKNCIVIDQYYCLGHGCANQTSAVRVAGVAYRD
IHGTYNPQAGAPIRLACSDAVACTDITMSGVELLPAGGDDGALLADPYCWNAYGVMETLT
LPPVYCLLEGSPESLQDPLTSC

Transcript Sequence

Transcript ID

Zm00001d040725_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:60285876:60288098:1 gene:Zm00001d040725 gene_biotype:protein_coding transcript_biotype:protein_coding description:Polygalacturonase

Sequence

GGGGGCGAATCCACACTAACAACATACTTCTAGATTCTGGTCGATCGTCGATGAGGCCGG
CGCCGGAGACAAGCACGCGGCGGCCGCAGCTGCGTCGCCGTCGTCCAGTGCCATTGGTGA
CGGTGGCCGTGTCTTTGGCGCTCATCTCGCTGGCGTGCCTTCCTGTCTTCGCGGATGCAA
GCAGAGCGCTGCACCGCGACCGGGAGGAGCACCGGAGGCAGCACCACCGCACGGAGGACA
AGAAGAGCCGCGTCTCGCTCCCTCCCGACGCTGACGGCGACTCTCCGCCCGAGCCTCCGG
ACTCCGGCGGCGCGCCGCCGCCTGCCGACGACAGCGACTGCGGCAACGTGTTCGACGTGA
GGGCGTTCGGCGCGTCGGGCGACGGCTCGTGCGTCGACGACGACACGGCCGCGTTCCGCG
CGGCGTGGAAGGCGGCGTGCTCCTCCGACTCCGCCGCGGCCACGCTGCTGGTGCCGTCGG
ACGGCGTGTTCACCATCGCATCCACCATCTTCTCCGGGCCGTGCAAGCCCGACCTCACCT
TCCAAATCGATGGCGTCCTCATGCCGCCGGACGGCCCGGCGAGCTGGCCGGCGACGGACA
GCCGGAAACAGTGGATAGTCTTCTACAAGGCCGATCGCTTGACGCTGGCGGGGGAAGGCA
CCATCGAAGGCAACGGTGAGGAGTGGTGGGATCTGCCGTGCAAGCCTCACAGGGGTCCAA
ACGGATCGACGCTGCGCGGACCATGTGACAGCCCCGCGCTCATACGATTCTTCTCGAGCA
ATGACGTGACGGTATGCGGCCTGCGGATCGAGAACAGCCCGCAGTTCCACCTCAGGTTCG
ACGACTGCGAGCGCGTGCGCGTCGACGGCCTCTTCGTCAGCTCGCCGGCGTCCAGCCCCA
ACACGGACGGCGTCCACGTCGAGAACACCAAGTCCGTCCAGATCCTCAACTCTAGGATCT
ACAACGGCGACGACTGCGTCTCCATCGGCGCCGGATGCTCCGATGTCCACGTCGAGAACA
TAACATGCGGCCACGGCCATGGAATTAGCATCGGCAGCCTGGGTGTCCACAACACCCACG
CCTGCGTGTCCAACGTCACGGTCCGGAACGTGCGGATACTCGACTCCGACAACGGCGTCC
GGATCAAGACGTGGCAGGGCGGCGCCGGCGCGGTGTCGGCGGTCGAGTTCACCGGCGTGC
AGATGCAGAACGTGAAGAACTGCATCGTCATCGACCAGTACTACTGCCTCGGCCACGGGT
GCGCCAACCAGACCTCCGCGGTGCGCGTGGCCGGCGTCGCGTACAGGGACATCCACGGCA
CGTACAACCCGCAGGCCGGCGCGCCCATCCGCCTCGCGTGCAGCGACGCCGTCGCCTGCA
CGGACATCACCATGTCTGGCGTCGAGCTGCTGCCGGCCGGCGGGGACGACGGAGCACTGC
TCGCCGACCCCTACTGCTGGAACGCGTACGGGGTCATGGAGACGCTCACGCTGCCACCGG
TGTACTGCTTGCTGGAGGGCAGCCCGGAGTCTCTCCAGGATCCGCTCACCAGTTGCTGAG
ATGAGATCGTTTTCTTTACTAACAAAGATTTCTCTCCTGAGACAGTCAACGCTAATACAC
TGGACATTCTACATGTGACAAATTACAAATTACGCAGACAATGTGAATTTCTGAAATGGC
ATGCTCCCAGCAACTGAAAGTTGAGCCGCAATGTATTCAAGAGAGTGAAAT