Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040678_T014
CDS Infomation

cds chromosome:B73_RefGen_v4:3:57611399:57618940:1 gene:Zm00001d040678 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCCGATTCTCCATCTGACGATCCTCGAAGGAAAAAGGTGATGGCTGAGTGGAGCAAT
TCTGTTCGTCCAATTCAGTGGAGATGCCACTGGTTAGAGTTGCGTATGAGGGAGCTTTCA
TCTCAAATATCGAAGTATGACAAGGAGCTTGCTCTAATCAAGAAACAGAATGAATTACAA
CAGGCAGCAAGCAAAGCAAATGGTACTATGTCAGAATCGATGCAGATTCATAAAGGCCAT
GGAAACAGTATCATGAAGAGGAGAAAGAGGAAGAGGCATGAGGACAGTGTGGATGCGTCC
TTGTACATCAACAAGCACCAGATATTGTCATACTACCATGATAAACAAAATAAGGGAGTT
CAAACCGGTGATCTCTTAGTTGATGACGATTGTGGCACAGTTGATGGTAGTATCAGTGGT
GGACTTGATACTACTACATTGCTTGATTCCGAGGATTATGATATGATTTGTGAGCAACAC
GCTTTACAGGATATTCTCCTGACAATTGATGGGCTTCAGTCTCGAGTCCATCTGCTGCAA
GATCGTCTCAGCAAAGCTCATTCTGAAGGAGAAAATTTGGCATTTTCTGGGGCCGATACT
GATGTCAGAGTGGCTGGGAAGAGACAGCGTACTCAAAAGCACTCATTCTCTAATACAAAG
TCTCGACATACTAAACCACAGAAAAGGAAGAATCTAAATATCTTGCTGAAGGATGATGAT
GATGGACAAGCTCTTGCAGGCGGACCTGCTTTGGCTGATGGGGAAACTGATGTGCATATG
ATAGGTGCTAGTAGGAGTACTGAAGAAAGAAGTGGAGAGTGCAATCACTCGAGGGACAAA
GCCATCACAGTGGACCTACTGTTGGGTACTGGCAATTCCATAACAAATAGTGATATTGGG
GATTTATACAATGTAAACACTGATGATGTCCTCATAGCCAATCAAGCAGCCGTTGAAGCT
TGTCAGCAGTTTCATGAGGCAAAGCATCTGCCTTCTGGAAGTCCTTCCAAAGACAAGATC
ATTTCTGCTCCAGCAGAAATGAAGAATAATTCTCCACCAGTGGAGGTGAAGAACACTTGC
GGTCCAGTAAAAATTGAGAGCTTGTGTTCTCCAGTTGAAGGAGAAAACACTTCTGATCCA
GCATTGGAGCAAGAATCGTTCCTTGAAAAGTCACCCTCGAGGCAGCCTGTATCCCCGGGG
AACAAGCAGGAGCTGAAACCTAAGAAAAGACGGAAGAAGAAAGGCTCTTTATTTACTAAG
AAGCAGCGGAAGGTGGACTCCAGAACACCTGATGCAAAGGAAAAAACTGAGGGCACGCCC
TCTGATGTAGCAGAGGAAACTGAGAGCCCACTCTCTGGTGCAACAGGACCAGGAACCATG
AGGTCTTGCTGTGCTGGAAAGAAGCGCAAATCTGGAAATGAACCTGCAGATGCAAATAAA
ACTGGGAAGCCATCCTCAGCAGTGAAGAAGCAGAAAACTGAAAACCCGACTGCAGCTGCA
AATGCGACAAAGAAGCGGGCCACGGAGAAGAAGCTAGAGAGCGCGAGTGCCTCCCAGAAG
CTGCAGGTTGAGAAAGCTGTGCTTGTCGCTGTAAATAGCAGGAGGAGCCAAAGGGTCCGT
AAGCCCAAAGTTTTTGCTGACTGA

Peptide Sequence

PEP ID

Zm00001d040678_P014
PEP Infomation

pep chromosome:B73_RefGen_v4:3:57611399:57618940:1 gene:Zm00001d040678 transcript:Zm00001d040678_T014 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPDSPSDDPRRKKVMAEWSNSVRPIQWRCHWLELRMRELSSQISKYDKELALIKKQNELQ
QAASKANGTMSESMQIHKGHGNSIMKRRKRKRHEDSVDASLYINKHQILSYYHDKQNKGV
QTGDLLVDDDCGTVDGSISGGLDTTTLLDSEDYDMICEQHALQDILLTIDGLQSRVHLLQ
DRLSKAHSEGENLAFSGADTDVRVAGKRQRTQKHSFSNTKSRHTKPQKRKNLNILLKDDD
DGQALAGGPALADGETDVHMIGASRSTEERSGECNHSRDKAITVDLLLGTGNSITNSDIG
DLYNVNTDDVLIANQAAVEACQQFHEAKHLPSGSPSKDKIISAPAEMKNNSPPVEVKNTC
GPVKIESLCSPVEGENTSDPALEQESFLEKSPSRQPVSPGNKQELKPKKRRKKKGSLFTK
KQRKVDSRTPDAKEKTEGTPSDVAEETESPLSGATGPGTMRSCCAGKKRKSGNEPADANK
TGKPSSAVKKQKTENPTAAANATKKRATEKKLESASASQKLQVEKAVLVAVNSRRSQRVR
KPKVFAD

Transcript Sequence

Transcript ID

Zm00001d040678_T014
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:57611399:57618940:1 gene:Zm00001d040678 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

CCCGGCCCCCGATCCTGATTCCCACAAATTTCCGCCATGGCGATCCGCCCGGACTGATGC
CCGATTCTCCATCTGACGATCCTCGAAGGAAAAAGGTGATGGCTGAGTGGAGCAATTCTG
TTCGTCCAATTCAGTGGAGATGCCACTGGTTAGAGTTGCGTATGAGGGAGCTTTCATCTC
AAATATCGAAGTATGACAAGGAGCTTGCTCTAATCAAGAAACAGAATGAATTACAACAGG
CAGCAAGCAAAGCAAATGGTACTATGTCAGAATCGATGCAGATTCATAAAGGCCATGGAA
ACAGTATCATGAAGAGGAGAAAGAGGAAGAGGCATGAGGACAGTGTGGATGCGTCCTTGT
ACATCAACAAGCACCAGATATTGTCATACTACCATGATAAACAAAATAAGGGAGTTCAAA
CCGGTGATCTCTTAGTTGATGACGATTGTGGCACAGTTGATGGTAGTATCAGTGGTGGAC
TTGATACTACTACATTGCTTGATTCCGAGGATTATGATATGATTTGTGAGCAACACGCTT
TACAGGATATTCTCCTGACAATTGATGGGCTTCAGTCTCGAGTCCATCTGCTGCAAGATC
GTCTCAGCAAAGCTCATTCTGAAGGAGAAAATTTGGCATTTTCTGGGGCCGATACTGATG
TCAGAGTGGCTGGGAAGAGACAGCGTACTCAAAAGCACTCATTCTCTAATACAAAGTCTC
GACATACTAAACCACAGAAAAGGAAGAATCTAAATATCTTGCTGAAGGATGATGATGATG
GACAAGCTCTTGCAGGCGGACCTGCTTTGGCTGATGGGGAAACTGATGTGCATATGATAG
GTGCTAGTAGGAGTACTGAAGAAAGAAGTGGAGAGTGCAATCACTCGAGGGACAAAGCCA
TCACAGTGGACCTACTGTTGGGTACTGGCAATTCCATAACAAATAGTGATATTGGGGATT
TATACAATGTAAACACTGATGATGTCCTCATAGCCAATCAAGCAGCCGTTGAAGCTTGTC
AGCAGTTTCATGAGGCAAAGCATCTGCCTTCTGGAAGTCCTTCCAAAGACAAGATCATTT
CTGCTCCAGCAGAAATGAAGAATAATTCTCCACCAGTGGAGGTGAAGAACACTTGCGGTC
CAGTAAAAATTGAGAGCTTGTGTTCTCCAGTTGAAGGAGAAAACACTTCTGATCCAGCAT
TGGAGCAAGAATCGTTCCTTGAAAAGTCACCCTCGAGGCAGCCTGTATCCCCGGGGAACA
AGCAGGAGCTGAAACCTAAGAAAAGACGGAAGAAGAAAGGCTCTTTATTTACTAAGAAGC
AGCGGAAGGTGGACTCCAGAACACCTGATGCAAAGGAAAAAACTGAGGGCACGCCCTCTG
ATGTAGCAGAGGAAACTGAGAGCCCACTCTCTGGTGCAACAGGACCAGGAACCATGAGGT
CTTGCTGTGCTGGAAAGAAGCGCAAATCTGGAAATGAACCTGCAGATGCAAATAAAACTG
GGAAGCCATCCTCAGCAGTGAAGAAGCAGAAAACTGAAAACCCGACTGCAGCTGCAAATG
CGACAAAGAAGCGGGCCACGGAGAAGAAGCTAGAGAGCGCGAGTGCCTCCCAGAAGCTGC
AGGTTGAGAAAGCTGTGCTTGTCGCTGTAAATAGCAGGAGGAGCCAAAGGGTCCGTAAGC
CCAAAGTTTTTGCTGACTGAAGAAGCAGGTAGAAAGTCTTAGGCTCTCTATTGTGTATGT
ATCTTGTAGCCCCGTCATCAAAATCGGTGGCCATAGCAACATAGGAAGTGCCTGGATCGC
CTCATAAGTTAGTGTACATATATCAGCTATGTCTCACCCAAATTGTAGATTTGTTAGTTT
GTTGTTCTTAACCCTTCTCTTCTGGGCTGCCAGATTAACAATGTCATGCTGTGTTAGCGT
TAT