Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040650_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:56240764:56246825:1 gene:Zm00001d040650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

ATGCCACCCATACCCAAGAGAGGCGAGCATCTCCTGGTCCTCCTAATTGTCGCATGCGCT
GCCACCGCCGCCACCGCCGCCGGCACCGTCCCCTTCTACCCGTCCGCGGAGTCCGCCGCC
GCCGCGCACTGCGACGGCACGCTGTACCCGGAGCTCTGCCTGTCGACACTCGCGGACATC
CCGGACCTACACAAGAAGCCGCTCCCGGACGTCATCTGCGCGGCCGTGAACCGCACCGAG
GACGTGGTGGTCGCCACGTCCAGCAACTGCTCGTACTACCTGCAGGACAGGTCCCTGTCG
GCGCGGGACCGCCTGGCCATCAACGACTGCCTGGAGCTGCTGTCCACCACGATGGACGAG
CTCCGCGCCAGCACCGCCGACCTGGCGTCCCCCGCCGGCAGGGGGTCGGCGTCGGCGGGC
GTGTCGCAGGGCGCCAGGCGCGCGACGATGGAGCACGTGATGACGGTGCTTTCGGCGGCC
ATCACCAACCAGTACACCTGCCTCGACGGCTTCGCGTACCAGAGCGGCGGGCGCGTGCGG
CGCTACATCGAGCCGACCTTCCACCACGTGTCCCGCATGGTGAGCAACTCGCTGGCCATG
GCCAAGAAGCTGCCCGGCGCCGGCGCCTCAGCGGCGCCAGCGCCGCCGCGGCAGCCGTTC
ACGGGGTACGGGCAGATGGTGAAGGGGTTCCCCCGGTGGGTGCGTCCCGGGGACCGGCGC
CTGCTGCAGGCCCCGGCGTCGGCCGTTGCCGCCGACGCGGTGGTGGCCAAGGACGGCAGC
GGGGACTACACGACGGTGGCGGCGGCCGTGGCAGCCGCCCCCACCAACTCGAAGAAGCGG
CACGTGATCTACATTAAGGCCGGCGCGTACATGGAGAACGTGGAGGTCGGGAAGAAGCAC
GTCAACCTCATGTTCGTCGGCGACGGCATCGGCAAGACCGTCATCAAGGCCAGCCGCAAC
GTCGTCGACGGCTACACCACCTTCCGCTCGGCCACAGTCGCTGTGGTGGGCAACAACTTC
TTGGCCCGCGACCTGACGATCGAGAACTCGGCCGGGCCGTCGAAGCACCAGGCGGTGGCG
CTCCGCGTGGGGGCGGACCTGTCGGCGTTCTACCGGTGCAGCTTCGTGGGGTACCAGGAC
ACTCTGTACGTGCACTCGCTGCGGCAGTTCTTCCGCGACTGCGACGTCTACGGCACCATC
GACTTCGTGTTCGGCAACGCGGCCGTGGTGCTGCAGGGCTGCAACCTGTACGCGCGCAAG
CCGCTGCCGAACCAGAGCAACATCTTCACGGCGCAGGGGCGGGAGGACCCCAACCAGAAC
ACGGGCATCTCCATCCAGAGGTGCAAGGTGGCGGCGGCGGCCGACCTCGCCGCCGCCCAG
TCCTCCACCAAGACCTACCTGGGCCGCCCATGGAAGCAGTACTCCCGCACGGTGTACCTG
CAGTCGGAGCTGGACTCGCTGGTCGACCCGGCCGGCTGGCTCGAGTGGAACGGCAGCTTC
GCGCTCGACACGCTCTACTACGGCGAGTACATGAACACGGGGCCCGGCGCCGGCACGTCC
GGGCGGGTCAAGTGGAAGGGGTACCGCGTCATCACCAGCGCCGCCGAGGCCAGCGCCTTC
ACCGTTGGCAACTTCATCGACGGCGACCTCTGGCTCGCCGGCACGTCCATCCCCTTCACC
ACCGGCTTGTGA

Peptide Sequence

PEP ID

Zm00001d040650_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:56240764:56246825:1 gene:Zm00001d040650 transcript:Zm00001d040650_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

MPPIPKRGEHLLVLLIVACAATAATAAGTVPFYPSAESAAAAHCDGTLYPELCLSTLADI
PDLHKKPLPDVICAAVNRTEDVVVATSSNCSYYLQDRSLSARDRLAINDCLELLSTTMDE
LRASTADLASPAGRGSASAGVSQGARRATMEHVMTVLSAAITNQYTCLDGFAYQSGGRVR
RYIEPTFHHVSRMVSNSLAMAKKLPGAGASAAPAPPRQPFTGYGQMVKGFPRWVRPGDRR
LLQAPASAVAADAVVAKDGSGDYTTVAAAVAAAPTNSKKRHVIYIKAGAYMENVEVGKKH
VNLMFVGDGIGKTVIKASRNVVDGYTTFRSATVAVVGNNFLARDLTIENSAGPSKHQAVA
LRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRDCDVYGTIDFVFGNAAVVLQGCNLYARK
PLPNQSNIFTAQGREDPNQNTGISIQRCKVAAAADLAAAQSSTKTYLGRPWKQYSRTVYL
QSELDSLVDPAGWLEWNGSFALDTLYYGEYMNTGPGAGTSGRVKWKGYRVITSAAEASAF
TVGNFIDGDLWLAGTSIPFTTGL

Transcript Sequence

Transcript ID

Zm00001d040650_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:56240764:56246825:1 gene:Zm00001d040650 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pectinesterase

Sequence

ACTCCAGTAGCAATGTAGCATTCCTTTAATTTGTTGTCCATTAACTGACAAGTGACTAAA
GACCATCCCTTATTTTTGGCGAGTCCGGCGGATCTCGGTTCCAATTCCAACACCGACACG
AAAGGCTCCTACTTGCTGCACATATATAGGTAGGGCCTCTCTACATAGAGATGCATTGCA
TTGTGCATTGCATTGCATAAACCTCTCGTGGGAAGTGCAAACACCAAATCCGCAATCTAT
CTATCTATCAGCCATTCAGGCCTGCAGGCTGCAGCTCTCTCCACTGCACACTAGAGCGAG
CTGCCACAGACAAGGACACAATGCCACCCATACCCAAGAGAGGCGAGCATCTCCTGGTCC
TCCTAATTGTCGCATGCGCTGCCACCGCCGCCACCGCCGCCGGCACCGTCCCCTTCTACC
CGTCCGCGGAGTCCGCCGCCGCCGCGCACTGCGACGGCACGCTGTACCCGGAGCTCTGCC
TGTCGACACTCGCGGACATCCCGGACCTACACAAGAAGCCGCTCCCGGACGTCATCTGCG
CGGCCGTGAACCGCACCGAGGACGTGGTGGTCGCCACGTCCAGCAACTGCTCGTACTACC
TGCAGGACAGGTCCCTGTCGGCGCGGGACCGCCTGGCCATCAACGACTGCCTGGAGCTGC
TGTCCACCACGATGGACGAGCTCCGCGCCAGCACCGCCGACCTGGCGTCCCCCGCCGGCA
GGGGGTCGGCGTCGGCGGGCGTGTCGCAGGGCGCCAGGCGCGCGACGATGGAGCACGTGA
TGACGGTGCTTTCGGCGGCCATCACCAACCAGTACACCTGCCTCGACGGCTTCGCGTACC
AGAGCGGCGGGCGCGTGCGGCGCTACATCGAGCCGACCTTCCACCACGTGTCCCGCATGG
TGAGCAACTCGCTGGCCATGGCCAAGAAGCTGCCCGGCGCCGGCGCCTCAGCGGCGCCAG
CGCCGCCGCGGCAGCCGTTCACGGGGTACGGGCAGATGGTGAAGGGGTTCCCCCGGTGGG
TGCGTCCCGGGGACCGGCGCCTGCTGCAGGCCCCGGCGTCGGCCGTTGCCGCCGACGCGG
TGGTGGCCAAGGACGGCAGCGGGGACTACACGACGGTGGCGGCGGCCGTGGCAGCCGCCC
CCACCAACTCGAAGAAGCGGCACGTGATCTACATTAAGGCCGGCGCGTACATGGAGAACG
TGGAGGTCGGGAAGAAGCACGTCAACCTCATGTTCGTCGGCGACGGCATCGGCAAGACCG
TCATCAAGGCCAGCCGCAACGTCGTCGACGGCTACACCACCTTCCGCTCGGCCACAGTCG
CTGTGGTGGGCAACAACTTCTTGGCCCGCGACCTGACGATCGAGAACTCGGCCGGGCCGT
CGAAGCACCAGGCGGTGGCGCTCCGCGTGGGGGCGGACCTGTCGGCGTTCTACCGGTGCA
GCTTCGTGGGGTACCAGGACACTCTGTACGTGCACTCGCTGCGGCAGTTCTTCCGCGACT
GCGACGTCTACGGCACCATCGACTTCGTGTTCGGCAACGCGGCCGTGGTGCTGCAGGGCT
GCAACCTGTACGCGCGCAAGCCGCTGCCGAACCAGAGCAACATCTTCACGGCGCAGGGGC
GGGAGGACCCCAACCAGAACACGGGCATCTCCATCCAGAGGTGCAAGGTGGCGGCGGCGG
CCGACCTCGCCGCCGCCCAGTCCTCCACCAAGACCTACCTGGGCCGCCCATGGAAGCAGT
ACTCCCGCACGGTGTACCTGCAGTCGGAGCTGGACTCGCTGGTCGACCCGGCCGGCTGGC
TCGAGTGGAACGGCAGCTTCGCGCTCGACACGCTCTACTACGGCGAGTACATGAACACGG
GGCCCGGCGCCGGCACGTCCGGGCGGGTCAAGTGGAAGGGGTACCGCGTCATCACCAGCG
CCGCCGAGGCCAGCGCCTTCACCGTTGGCAACTTCATCGACGGCGACCTCTGGCTCGCCG
GCACGTCCATCCCCTTCACCACCGGCTTGTGAGCGCGCGGCGGTATGTATACGAGGGGTT
TCACGGCAAGGGATGACAATAAACCAAATTGGCGGCGGCGGAAGTTCGTCGTTTGTACGT
TCGTTCATTTCAATCAGAGCTAAAAAAAAGGCACCGTATCGATCCGGTCGATCGTGTTAC
TGTAGTTGATTATTTTGTGCTTGGGGACGCAGGCCAATATATTTATTTAATTTAACCGTC
CCATATATATGTACACGTGCTTGTTATGATTCGGTGTATTATTTATATGTATTGATACGG
TATCAATATATAATTAATAATGATACGGGTTCTAATAA