Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040641_T027
CDS Infomation

cds chromosome:B73_RefGen_v4:3:55746893:55752392:1 gene:Zm00001d040641 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dual specificity protein phosphatase PHS1
Sequence

ATGGCAACACAGGCAGAGCGTTTGGGTTATGAGTTTGCAAGATTGCTCGGAGTCCATACA
CCACAAGCTAGAGTAGTATATAATTCTAGCTCAGAGTGGCTGGCGATTAGGCATGCTGCA
GAAAATGCACGTACAGTAGCAGTTTCAAATAATGATGAGGTTGGTGAGATGACGTGCTCA
GAGTTGTTAGAAGCTCTTGAGCTAAGCCGCTGCCTTCTTCTAATGAGTTATATTCATGGC
TCCCCACTGCTTGAGAGTTCAAAGGCTTTCCATTCACGAGAAGCTGCTTGTGTTACTGCT
TCATCACTGGGAAGGGTTTTGATGCTTGATCTGATACTGCGGAATGAGGACAGACTCCCA
TGCCGTCAGCTTGGTTGGCGTGGTAATCCTGCAAACCTGATGATTTCAGATAAATCATCC
TTACCCAATTTGGACAGGTTGGATGATTTCAAGAGCTCTACAGATAGTTCCAACCAACTA
ATTACACATTTTTTGCATAGAGAGAAGCGGTCACACTCTTTGAATGGAAAATTTGGTTCA
CCAGGGTTGGATCCCATGTCACCAAAACTAGAACCATTGATAAATGAAAAGGAAAATGCT
GAAAGAACAAATGGCGATTTTCGCATTGTAGCAATCGATACTGGTGTGCCCCGCCGCCCC
CCTGTGGGGCGACGTGTCAAAGATCATGAGAGGTACCCCAAAGTTGTGGAACTCATTTTG
AATAGTTCGGACTACTCAGCAAGCATCCTATATGAAATTTCTGGTTGTAAGCTTGGACAT
CCACGACCTGATGAGGTTACTTCCAGTGATTCTTGTTGCTCCCTTTCTGATGAAGATAAT
GCTGGAGTGATTCATGAATTCCGAGGATCATTCCGTGCAGCTCTTAGGGACCTGGAGGGG
TTCCATCTATTTCTTCTCCAGCTTTACCAAAAACTGGATGGTGTTTTGCGAGTTTTCTTG
TCCATAATTACTAAAACCTCTGAAGAATCTGACAATAATGATGCTGCCCTTTCCGATTTT
CCTTCACCTGGAGCCAGCTATAGTACTCCTCGCCTTCCTAGTAAGCATCTGAACAATGAG
CTTCATAGTGATTCTGAAATGCTGAAATCTGCAATGAAGTCCTCTTCTGTGGGATCCCGC
GGAAGCTCAGATTCAGTTTCTCCTCTGCCCAGGGAGAGTTGGAACAACAAGTCCTTCAAG
GGAAGTGCAGAGGCTCCCCGTAGTTTAAGAATGACAATGAAACTTCGTGATTTTTACAAA
ACCCCAAAGGTTGATCCTGAATTGCTCAAAGAGATTGAGCAGTGGAACGAAGCACTTAAG
AATGATGTGATCAAATTTTGCCAAGAGAACAATTTTCATTCTGGTTTCTTTGATGGAACT
GAAAACAACATGGTAGCTGATGCCTATGAATTGAAGGTGCGTCTTGAACACATCATTGAA
AGGATAGCCTTGATTTCTGATGCTGCAAATACAGAACGACCTTCTCTTGTTGTCAACAAC
TTGTTCATAGGTGGGGCTCTGGCTGCAAGGTCTAAGTACACCCTACAGCATTTGGGCATT
ACCCATGTACTCTGTTTGTGTTCAAATGAGATTGGTCAATCCGATTCCCAATTTCCCGAT
CTTTTTGAATACAAGAACTTTTCAATTAGCGATGATGATGATGCAAACATCAGTGATCTT
TTTGAGGAAGCATCAGACTTCATTGATCATGTGGATCATGTTGGGGGCAAGGTTCTAGTT
CATTGCTTTGAAGGGAAAAGTCGGAGTGCCACAGTCGTACTTGCCTATCTTATGCTTAGA
GAGGGCTTTACTCTTGCAAAAGCCTGGAACTTACTGAAGAAAGTACACCGTCGAGCGCAG
CCAAACGACGGCTTCGCAAAGGCTCTCCTGGCCCTTGACAAGAGGCTGCATGGCAAGGTA
TCTATGGACTGGCAACACAAGCGGCCAGAAATGAAGGTGTGTCCAATCTGCAGCAAGAAT
GTTGGTCTAAGTACGAGTTCACTCAAGCTGCACCTGCAGAAGGCACACAAGCGTCTATCT
GCAGGCAGTGTCGACAGCGCCATGACCATGGAGATCCAAAAATCGATCGAGTCACTCCAG
ATCAGCCGAGGAGGAAGCCTGAGCCCGTCCCAGAAGCTGACCAAGGTGTTCAGCAATGAG
CTGAGCTTCTGA

Peptide Sequence

PEP ID

Zm00001d040641_P027
PEP Infomation

pep chromosome:B73_RefGen_v4:3:55746893:55752392:1 gene:Zm00001d040641 transcript:Zm00001d040641_T027 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dual specificity protein phosphatase PHS1
Sequence

MATQAERLGYEFARLLGVHTPQARVVYNSSSEWLAIRHAAENARTVAVSNNDEVGEMTCS
ELLEALELSRCLLLMSYIHGSPLLESSKAFHSREAACVTASSLGRVLMLDLILRNEDRLP
CRQLGWRGNPANLMISDKSSLPNLDRLDDFKSSTDSSNQLITHFLHREKRSHSLNGKFGS
PGLDPMSPKLEPLINEKENAERTNGDFRIVAIDTGVPRRPPVGRRVKDHERYPKVVELIL
NSSDYSASILYEISGCKLGHPRPDEVTSSDSCCSLSDEDNAGVIHEFRGSFRAALRDLEG
FHLFLLQLYQKLDGVLRVFLSIITKTSEESDNNDAALSDFPSPGASYSTPRLPSKHLNNE
LHSDSEMLKSAMKSSSVGSRGSSDSVSPLPRESWNNKSFKGSAEAPRSLRMTMKLRDFYK
TPKVDPELLKEIEQWNEALKNDVIKFCQENNFHSGFFDGTENNMVADAYELKVRLEHIIE
RIALISDAANTERPSLVVNNLFIGGALAARSKYTLQHLGITHVLCLCSNEIGQSDSQFPD
LFEYKNFSISDDDDANISDLFEEASDFIDHVDHVGGKVLVHCFEGKSRSATVVLAYLMLR
EGFTLAKAWNLLKKVHRRAQPNDGFAKALLALDKRLHGKVSMDWQHKRPEMKVCPICSKN
VGLSTSSLKLHLQKAHKRLSAGSVDSAMTMEIQKSIESLQISRGGSLSPSQKLTKVFSNE
LSF

Transcript Sequence

Transcript ID

Zm00001d040641_T027
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:55746893:55752392:1 gene:Zm00001d040641 gene_biotype:protein_coding transcript_biotype:protein_coding description:Dual specificity protein phosphatase PHS1
Sequence

AGGATAAAGATCTGAAGCTACCTTCTCGTGTGGTTTCTTTATTATTTGGTGGTGATATAT
CGACGTCAGCACAAACATTTGAGAAATGGCTCTCATTAGTACGTAAGAGGAGTGGGGCTT
TCCGGCCATCTGGGTTCCCACATCGAGGTTCAAGGATTGAAGTCATGCCAAGTGGGAGCT
TCTCACTATTTGGTAGCGGGGACTTAAGTGAACACTTGATTAGAGAAGCACCAACAAGAA
AAGATCCATTGGACTGCGATCAATCTCCTGAAATAAGCTTGTGGGAGAGACTTGGGAACT
CTTCTGCACTGGACATTGAGTCATCTGAATTTTCATGGGACGTGTTGTTGTCTCTGCATC
ATACAGAACATAGTAGTAGTTCCGAACAAACTGAAGACGAAATGAATAAAGCTCTTGAGG
TTTGTCACAACCTGTTATGATGCCAATTTCAACATCCTGTGTAGTGTCCATTGTAGCGAG
AAAGGCTATTTGCTTCAGTTTACCATGTCTGATTCAAGTTGGAATGACAAACATCTTATA
TTCTCCATCCACTTTAAGGAGAATATTTTAGTAGGGAAATGAAAGCTCTCCAAGTAGATT
TTATCAATTGGGAAAAACTCAATGTCATATTAAAAGCACTTTGAAATACAAATACAATTG
ATCGTTGTTTTGTACACTAAGTATGCATGTAATTTGATATTCATCGTCCAAAACTTACTA
TGTCTGACTTTCTCAAATTGAAATACACTTAACAAAAGTGGACAGAGGAAGTAGTAAACA
TTCAAGCTCATATTCTTCATTTCTTCTGCCATTTCACCCTCCGCGCTAATGTGGGCACCT
GGTGCTACCACGGCTTCACCCTCCGCACTGACATTCTGGGCCCACCCCCGACTCCGCCCG
CATAGCTACCATCAGACTACATGTACCTTAGTGTTTAGAAATAAACAATAATTATATAAA
AAATAGTGCAGAGCAAGCACTCGAACCCACGTCCCTCTGCTCCAGAAATTTAGGGCTAAC
CACCAGACCACACGTACATTAGTGTTTACAAATAAACAATAATTACATTTGAATAAATAT
TTTAGTACCTATTTATATGATACATAAAAAACGTAGCAAAGCACGGGCAACTGGCTAGTT
ATCTATATGACTATATTGATGCATGTGCTTAACACGCTGATTTCCACACCCTGTTGTTTT
TAGGTGACTGTGAACTCTGGTGGCGTAGTGTTCTTTGCTCTATTTAGTTCTCCAGGTAAC
ATTGGAGTTCCAGAAGCGGCAGCTGTTATAAAGTTTTCGTCATCAAAGATGGCAACACAG
GCAGAGCGTTTGGGTTATGAGTTTGCAAGATTGCTCGGAGTCCATACACCACAAGCTAGA
GTAGTATATAATTCTAGCTCAGAGTGGCTGGCGATTAGGCATGCTGCAGAAAATGCACGT
ACAGTAGCAGTTTCAAATAATGATGAGGTTGGTGAGATGACGTGCTCAGAGTTGTTAGAA
GCTCTTGAGCTAAGCCGCTGCCTTCTTCTAATGAGTTATATTCATGGCTCCCCACTGCTT
GAGAGTTCAAAGGCTTTCCATTCACGAGAAGCTGCTTGTGTTACTGCTTCATCACTGGGA
AGGGTTTTGATGCTTGATCTGATACTGCGGAATGAGGACAGACTCCCATGCCGTCAGCTT
GGTTGGCGTGGTAATCCTGCAAACCTGATGATTTCAGATAAATCATCCTTACCCAATTTG
GACAGGTTGGATGATTTCAAGAGCTCTACAGATAGTTCCAACCAACTAATTACACATTTT
TTGCATAGAGAGAAGCGGTCACACTCTTTGAATGGAAAATTTGGTTCACCAGGGTTGGAT
CCCATGTCACCAAAACTAGAACCATTGATAAATGAAAAGGAAAATGCTGAAAGAACAAAT
GGCGATTTTCGCATTGTAGCAATCGATACTGGTGTGCCCCGCCGCCCCCCTGTGGGGCGA
CGTGTCAAAGATCATGAGAGGTACCCCAAAGTTGTGGAACTCATTTTGAATAGTTCGGAC
TACTCAGCAAGCATCCTATATGAAATTTCTGGTTGTAAGCTTGGACATCCACGACCTGAT
GAGGTTACTTCCAGTGATTCTTGTTGCTCCCTTTCTGATGAAGATAATGCTGGAGTGATT
CATGAATTCCGAGGATCATTCCGTGCAGCTCTTAGGGACCTGGAGGGGTTCCATCTATTT
CTTCTCCAGCTTTACCAAAAACTGGATGGTGTTTTGCGAGTTTTCTTGTCCATAATTACT
AAAACCTCTGAAGAATCTGACAATAATGATGCTGCCCTTTCCGATTTTCCTTCACCTGGA
GCCAGCTATAGTACTCCTCGCCTTCCTAGTAAGCATCTGAACAATGAGCTTCATAGTGAT
TCTGAAATGCTGAAATCTGCAATGAAGTCCTCTTCTGTGGGATCCCGCGGAAGCTCAGAT
TCAGTTTCTCCTCTGCCCAGGGAGAGTTGGAACAACAAGTCCTTCAAGGGAAGTGCAGAG
GCTCCCCGTAGTTTAAGAATGACAATGAAACTTCGTGATTTTTACAAAACCCCAAAGGTT
GATCCTGAATTGCTCAAAGAGATTGAGCAGTGGAACGAAGCACTTAAGAATGATGTGATC
AAATTTTGCCAAGAGAACAATTTTCATTCTGGTTTCTTTGATGGAACTGAAAACAACATG
GTAGCTGATGCCTATGAATTGAAGGTGCGTCTTGAACACATCATTGAAAGGATAGCCTTG
ATTTCTGATGCTGCAAATACAGAACGACCTTCTCTTGTTGTCAACAACTTGTTCATAGGT
GGGGCTCTGGCTGCAAGGTCTAAGTACACCCTACAGCATTTGGGCATTACCCATGTACTC
TGTTTGTGTTCAAATGAGATTGGTCAATCCGATTCCCAATTTCCCGATCTTTTTGAATAC
AAGAACTTTTCAATTAGCGATGATGATGATGCAAACATCAGTGATCTTTTTGAGGAAGCA
TCAGACTTCATTGATCATGTGGATCATGTTGGGGGCAAGGTTCTAGTTCATTGCTTTGAA
GGGAAAAGTCGGAGTGCCACAGTCGTACTTGCCTATCTTATGCTTAGAGAGGGCTTTACT
CTTGCAAAAGCCTGGAACTTACTGAAGAAAGTACACCGTCGAGCGCAGCCAAACGACGGC
TTCGCAAAGGCTCTCCTGGCCCTTGACAAGAGGCTGCATGGCAAGGTATCTATGGACTGG
CAACACAAGCGGCCAGAAATGAAGGTGTGTCCAATCTGCAGCAAGAATGTTGGTCTAAGT
ACGAGTTCACTCAAGCTGCACCTGCAGAAGGCACACAAGCGTCTATCTGCAGGCAGTGTC
GACAGCGCCATGACCATGGAGATCCAAAAATCGATCGAGTCACTCCAGATCAGCCGAGGA
GGAAGCCTGAGCCCGTCCCAGAAGCTGACCAAGGTGTTCAGCAATGAGCTGAGCTTCTGA
TCTGTTTTCCTGTACTATAGATGAGGCAATGTACTTGGCTCACATTGTAATAACTTGTAC
TATCAGACTGAACTTGTGACTGTAGGTTTAGTTCACACGCCTATATGATTAGCACACGAA
TGTTCAGGTGTGAAGGGTGCAACACTAAAGAATGTTCAGGTCTTGTATTTGTTGCCTGCA
GTATGCAGTTTTCTTCTAAAGGGATCTACTC