Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040627_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:54948300:54950704:-1 gene:Zm00001d040627 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium transporter HKT1
Sequence

ATGCCCCCTTTGCACGTCCCCGGTAGTAGTACTCCTCGCAAGTTCTATCACCTGGTGCTG
TTCCATGTGCACCCGTTCTGGATCCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGT
TTCTTGATGCTGAGAGTCCTGCCCATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTG
GACCTACTCTTCACGTCGGTGTCGGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATG
GAATCCTTCTCTAACGCGCAGCTCCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAG
GTGTTCACAAGCATGCTTGGTCTCCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAA
ACACCTCATAATAATCTCCATGGTAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCC
ATGGAGATGGAAGCCCAGGCCGCCGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGAC
GGCCATGGCGATTTCGCATCCATGGCTAGGTTGCTAATGTTTATCGTGCTGGGCTACATC
TTGGTCGTGCACATCGCCGGCTACGCGCTCATTCTAATCTACCTTAGCGTGGTCGGCAGC
GCGAGAGCAGTGCTTGTTAGGAAGAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTC
GTCTCGTCGTTCGCAAACTGTGGCTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAG
TCCTTCCCGGGCATGCTCCTCCTGGTCATGCCACACATCCTGCTCGGGAACACGCTCTTC
CCCATCTTCCTCAGGCTCTCCATTACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTC
TGCGAGCTGCTGAGAGACAGAGGACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCC
GCTATAGGCTACGACCACCTGCTCCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTG
GCGGTGTTCCTGGCGGTGCAGCTGGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGC
CTTGGAGGGCTCAACGCGTTCCAGAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCC
AGGCACTCCGGCGAGATGGTCGTCGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTG
TATGTGCTCATGATGTATCTACCGCCTTACACTACATTTTTACCGGTAGCAGTGGAAGAC
GACCAGCAGCAGCAAAATGAGGCACAACCCCACGACAATAGCACGAGCAAGAGCAGCACA
AGTATTAGCATCTGGCACAATCTGCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATC
GTCGTCATCTGCATCACCGAGAGGCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTC
CTCAACATCGTCGTCGAGGTCATCAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTAC
AGCTGCAGCAGGCAGGTGACGCCCGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTG
TCCGGCAAGTGGAGTGTGGAAGGGAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGG
CTCAAGAAGTTCAGCATGCTTGGGGGTCAGGCATGGAGGCTGAACTGA

Peptide Sequence

PEP ID

Zm00001d040627_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:54948300:54950704:-1 gene:Zm00001d040627 transcript:Zm00001d040627_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium transporter HKT1
Sequence

MPPLHVPGSSTPRKFYHLVLFHVHPFWIQVLYFLLISVLGFLMLRVLPMKSSSVPRPSAL
DLLFTSVSATTVSSMIAVEMESFSNAQLLLMTLLMLLGGEVFTSMLGLHFTCTKLRNKRE
TPHNNLHGNSLEQSRRRHRPMEMEAQAAAVQMELAGFNKDGHGDFASMARLLMFIVLGYI
LVVHIAGYALILIYLSVVGSARAVLVRKRISLSTFSVFTVVSSFANCGFVPTNEGMVSFK
SFPGMLLLVMPHILLGNTLFPIFLRLSITALERVTRWRDLCELLRDRGPGGGPAAAAAAA
AIGYDHLLPGPRTWFLALTVAVFLAVQLVLYCAMEWGSGGLGGLNAFQKLVAAVFMSVNS
RHSGEMVVDLATVSSAVVVLYVLMMYLPPYTTFLPVAVEDDQQQQNEAQPHDNSTSKSST
SISIWHNLLMSPLSCLTIFIVVICITERRQIARDPINFSVLNIVVEVISAYGNVGFSTGY
SCSRQVTPGGGCCKDAWVSLSGKWSVEGKLTLMAIMFYGRLKKFSMLGGQAWRLN

Transcript Sequence

Transcript ID

Zm00001d040627_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:54948300:54950704:-1 gene:Zm00001d040627 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sodium transporter HKT1
Sequence

CACAAATAATTCTGGCGGATTCATACACAGCAAATAAATCAAAATGCAACGCTCCCCACA
GAAACTAAGCAAAGAAATAGCGCCAACAAGTTAAATAATGCCCCCTTTGCACGTCCCCGG
TAGTAGTACTCCTCGCAAGTTCTATCACCTGGTGCTGTTCCATGTGCACCCGTTCTGGAT
CCAAGTCCTGTACTTCCTTTTGATCTCCGTTTTGGGTTTCTTGATGCTGAGAGTCCTGCC
CATGAAGTCCAGCTCCGTGCCTAGGCCCTCGGCTCTGGACCTACTCTTCACGTCGGTGTC
GGCGACGACAGTCTCCAGCATGATCGCCGTCGAGATGGAATCCTTCTCTAACGCGCAGCT
CCTCCTCATGACCCTCCTTATGCTCCTCGGGGGCGAGGTGTTCACAAGCATGCTTGGTCT
CCACTTCACCTGCACCAAGCTCAGAAACAAGAGAGAAACACCTCATAATAATCTCCATGG
TAATAGCTTAGAGCAGAGTCGTCGTCGTCACCGTCCCATGGAGATGGAAGCCCAGGCCGC
CGCCGTCCAAATGGAGCTTGCAGGGTTCAACAAGGACGGCCATGGCGATTTCGCATCCAT
GGCTAGGTTGCTAATGTTTATCGTGCTGGGCTACATCTTGGTCGTGCACATCGCCGGCTA
CGCGCTCATTCTAATCTACCTTAGCGTGGTCGGCAGCGCGAGAGCAGTGCTTGTTAGGAA
GAGGATCAGCCTGAGCACCTTCTCCGTCTTCACGGTCGTCTCGTCGTTCGCAAACTGTGG
CTTCGTGCCAACCAACGAGGGGATGGTGTCCTTCAAGTCCTTCCCGGGCATGCTCCTCCT
GGTCATGCCACACATCCTGCTCGGGAACACGCTCTTCCCCATCTTCCTCAGGCTCTCCAT
TACGGCGCTCGAGAGGGTCACAAGGTGGCGAGACCTCTGCGAGCTGCTGAGAGACAGAGG
ACCCGGCGGCGGGCCAGCTGCGGCTGCCGCCGCCGCCGCTATAGGCTACGACCACCTGCT
CCCGGGACCGCGCACATGGTTCCTTGCTCTCACCGTGGCGGTGTTCCTGGCGGTGCAGCT
GGTGCTCTACTGCGCCATGGAGTGGGGCTCCGGTGGCCTTGGAGGGCTCAACGCGTTCCA
GAAGCTCGTTGCAGCGGTCTTCATGTCCGTCAACTCCAGGCACTCCGGCGAGATGGTCGT
CGACCTCGCCACCGTCTCCTCCGCCGTCGTCGTGCTGTATGTGCTCATGATGTATCTACC
GCCTTACACTACATTTTTACCGGTAGCAGTGGAAGACGACCAGCAGCAGCAAAATGAGGC
ACAACCCCACGACAATAGCACGAGCAAGAGCAGCACAAGTATTAGCATCTGGCACAATCT
GCTCATGTCGCCGCTCTCGTGCCTAACCATCTTCATCGTCGTCATCTGCATCACCGAGAG
GCGGCAGATTGCTCGTGACCCAATCAACTTCAGCGTCCTCAACATCGTCGTCGAGGTCAT
CAGTGCGTATGGCAACGTGGGATTCAGCACCGGGTACAGCTGCAGCAGGCAGGTGACGCC
CGGCGGCGGCTGCTGCAAGGACGCGTGGGTTAGCTTGTCCGGCAAGTGGAGTGTGGAAGG
GAAGCTCACGCTCATGGCCATCATGTTCTATGGCAGGCTCAAGAAGTTCAGCATGCTTGG
GGGTCAGGCATGGAGGCTGAACTGAACCGAAGTACTATTTCGAAACTCGCTCGATCAACC
TGATCTCCAGGACTCCAAGACTAGTACTTGAATTCTCAGTCTATTCAGACGGAACCGGAT
CATATGACAAATCCATCTGCGAGGAGTTTGGCTGCATTCTGTAAAGTCGGTAGGGGCAAG
GGGTTGTTCATATCCTTTTTATTTAAAAATAAAAAATAGTTTTATATCTCGACTTTTGAA
AATTATATTTTGAGGTGTCTGTCACCCAGGGGACGGCAGGGAGTTAAATGTAATTTTTAA
TAAATAGGTTCTCGTCGCTCACTCACTCATTACGGGCTTATTCGGTTATTTTCAATCTAT
ATGGATTGTACGAGATTGATACGGATTGGAAAAAATTTTGATTTACTAGGG