Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040625_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:54768193:54773642:-1 gene:Zm00001d040625 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGAATTGGACTAGCAGAGATGTCTTAGAAATAATGTTCATTTTTTCAGTAATGCATGAA
TACATCAATTGTTACTATTATTGTGTACTTTTCTGGTCAACTTTCTCTTGGACATTCCTT
CAAAAAAACATTCCCTTAGATAATTATGATCTTTTGGAACTGTTTTTTGTTTTCAGCTGC
AGATACCTTAATGAAGGCAGTGATGGTGACAATGCTCCAGAAACAAGCAGTGATGTAAGC
AATGAGAGTGACAATGACAATGACAATGAAAGGTCTATTGGAAGAACAACCCAATGTTTA
GTAGAAAATATTTGCACCGATCAAGAAAGGTTGTCCAGTGATGACTGTGATTCCAGTAAC
CAGGAACCTCCCCCTGTTTTCCAATATATGGAGCATGATGCACCATATGGAAGACAACCA
TTAGCAGATATGATTTCAGTATTTGCATGTAAGTTTCCTGATCTAAATACATACAAGAGC
TGTGATCTTCTCCCGTCCAGTTGGATCTCTGTAGCCTGGTATCCCATATACCGGATACCA
ACAGGACCTACGCTACAAGATCTAGATGCTTGCTTTTTAACATTCCATTCATTGTCAACA
ACACCTGATGGTACGATAAGCGGTTGTCCTGAGACAAATAACTTACATAACAGTAAAGTT
GCTTCTGTTCCTGGGAAGATCACACTGCCTCTGATCGGCCTAGCATCTTACAAATTAAAT
GGTTCCTTGTGGACGTCAAATCAGCACCATGAGCAGCAGTTGACTACGTCGCTTCTGAAA
GCTGCTGATGACTGGCTTTGCCAGCGGCAAGTAGATCACCCAGATTACCGCTTCTTCCTC
ACACACTAA

Peptide Sequence

PEP ID

Zm00001d040625_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:54768193:54773642:-1 gene:Zm00001d040625 transcript:Zm00001d040625_T004 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MNWTSRDVLEIMFIFSVMHEYINCYYYCVLFWSTFSWTFLQKNIPLDNYDLLELFFVFSC
RYLNEGSDGDNAPETSSDVSNESDNDNDNERSIGRTTQCLVENICTDQERLSSDDCDSSN
QEPPPVFQYMEHDAPYGRQPLADMISVFACKFPDLNTYKSCDLLPSSWISVAWYPIYRIP
TGPTLQDLDACFLTFHSLSTTPDGTISGCPETNNLHNSKVASVPGKITLPLIGLASYKLN
GSLWTSNQHHEQQLTTSLLKAADDWLCQRQVDHPDYRFFLTH

Transcript Sequence

Transcript ID

Zm00001d040625_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:54768193:54773642:-1 gene:Zm00001d040625 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GGCCGCCGCCCCACAGCCCCACTAGGCTAGGCCACTAGTAAAGGAAACGCAGCCGCAGCC
TTTGCCGACGCCGGGGTGCCGGGCAGGAGCGCCGTACTACGAGCTCGCGGATCTGTGGGA
GGCGTTCGGGGAGTGGAGCGCGTACGGCGCCGGCGTGCCGCTGCTGCTCAATGGCACGGA
TGGCGTCGTGCAGTACTACGTGCCATTCCTGTCCGCTATCCAGCTCTATGGGTCGCGGCT
GCCGTCGTCGAGCAAGACCAAGAGGTAGTATAACAGGCTCATAGCTGTCATTTTTATGTT
GGAATCTGCGGGTACCTGCATTGAATGGGTTGACATTGTGGACCATGACTTCCTCGATTC
TGTCAATACTTGGATATGTTAGGCCAAACGTAGTTGAAAGATTATTGCCATTCTTTTGTA
TTTGTTCCAGAAACACTGAAGTCTACTTTATCTTAAAACCAAAGAAACTAACAAACTGAA
CCACTGCTACTGCTAAAGATTAAAGAAAATCTCGTAATGTTCCATGAGCGTGTCTGATCT
TGCTAGTCGTATGGAACTAGTGGATGCATGTTATCATGCACATTGATATGATTAGGCTAG
TCGACATGCTCTTCTTGAACCAGGATCTGTTTTTTTTTGTTCTTTACATATTTCAATTAA
TTGATGAACGTCTTTTTAAATATATCAGTAGTCATTTTGCCTGATGTTACCTTTAATCAT
GCAGTATTGCTAGCTTGGATGTTTTCTGCAGTACATTTTCAAACAAGTCCGAATATTTTC
CAAGTGGCTGTAGTTAGTCTTGGTTATGCATTTGAACAACCGGACAAAGTACACTTTTTA
TTCTATAAGCCCTTGGTACTTCTATTGTGGCACAAGCTTCCTATCTTATGGCATGTGTTG
GTCTGTGTGACCCAAGTGTGCTCAAGTTAGTCAAGCCAAAATTTGGCACCTTTGACCAAT
ATTGGCTACCATTTGGTTGAGTGCCAAAAGATGTAATGGTACCTTATCTCTATGCTACCT
TAGTTGTCAAATCTTGCCAATATTAAGGTCATTAAAATTGGTTGTGACCTTGATTTTTTA
TATATTAAAACTAGACCAATAAAGAAGGAAGTCGGTGGCTATAAATTAAGAATTTGGCAC
CTAATGTTTTGCCAGTGAGGACTTGAATTGGGTGGTCTGTGCTTTACATCCACACCCTCA
ACCAATTGAGCTAAGATGAGCATCTCTAGGAGCTCTCCAATACCATTCCTCATCCGCATA
AAACTGTCATATTTGGGGATGAGGCAATTCCATAGCTCCAGCAGCTTCCCAATAGCTCTC
CTTTTCTGGTGTTCACAAAGAAAACCTCCATCTCCTCTCAATTAAAGGGGAGTTGCATCT
CCACATTAGTGTTGGGACCACAACAACTGTCATCTTCCTTTTTCCACGTCCTCTATTTTG
ACATGTGGGTTCCATTGAGAAAGATTATTGGTGCTGGAGCATCTCCCCGAATATTCCAAA
AAAGCACTACCGGTGACCACCAATTCCATTTTATTAGGGATGAATTAATGGTGATCTGCT
GGATATGCTCTTAGTTCCAATTTTGACCTCAATTTTGGCATTCCAAATTTGGATTGTCTA
CTTTATGACAAATTTCAGTGCAAATCAAACAGCCCCATGTTCTTGCTTGTTATATTAAAG
CATGGTTAATATTGAACACTCCATTCTTGCAAGCATCCTACCATTCATTTGAGGCTGTAA
TTGTTGCATGGATCATCAAATCATCATTGAACATTATAATGACCATTACATTTTATTTAC
AGCAGCATGTGATACTAGCATTGAACATGTAAAATGTCAGTATTACTACCTGTGGTTAAA
TATTTGCAGGATAATTTTATTTATACTTGTTACATTTCTTTTTATATAACAATACCTAGA
AACAATTCAAGCAGGGGATCTAATCCAAAGTTGTCCGCTTTACTTTATATAACAGGTTGT
GATTGAACTGACCAGATGAACGATTCATCGTCTGAACTGTTCTGACTGTGTTCACTAATG
GTGACTATTCTTGAAAACCAGAGCATATCAGCATGCCTGTACTTGCTTGAAAAAAACATC
AATCATAGTACCATTCTCCTGGCATTTCACTGATTATATAGATCTGTTTCCAGATCAAGT
TATATAATACCATGGTCGAGGTGTCTCTGACCAGCTCCTGAGAGCTATAATTCCAGCTAA
CAATGAATCTGGTAAAACCCCAAACCAATGCAAGGAACTGGCCGTGAAATTTGCTCTTAA
ACATCAAAGAATTGTGCTCCACCCTGCAACTACATCACGTTTCCATAAAAAGCATTAAGT
TAATCCAGACTATTATGGAGCATGGTGAGCAATATAAATTTGCCTATGGTGAATTCATTT
CTTATGCTTCTTTCAGATTTCTCAAAAAAAAACGGCCATAATTTCACTTGCATTATTGAT
TAAAAAATAGGCTGTCAGAATTGTTAGAACAAAAATAATGAAGGTGTTACTGCACTGCTT
GCTATTTTAAGTCTCTGAACCATCAGGTTTCAACTTGGCTGATATTTTTTTTGTTGGCTT
CTCTCGAAGCTGAAAGTTTATCTTGAAGGAGTTGGACTTCCCTGAAATGTTTTAGACCTT
ATAAACCACAGTTCCTTTAGAACACACTGATTAATTTTTCAGGAATAAAAGCCTCTGATT
TATATTTATTTAAGTTTATTTTGGTGAGAGCTGTCTTACCGAGTCATCAGGTCACAGGTT
CGAAGCAGCCTCTACGCATTCGTGGAGGGAAGGTTTGCCTTGGTTTATCCTTTACCAAAT
CCCATTCATGTGGGAGCCTCCGGCACTTGGTGTTCCCTTATGTTTCTTATTTGAGGAGTT
TTTTTAGATAATGGAGGTAATCTCTGGTTTCAGCAACAACTAGGGATGAAGTGCTACTTA
AAAATGTGGGCACTAGGATTTGAACCTTGGTAGGTGGTGTCATGCATCCACAATCTGAAC
TGACACAAACTGGTTTGTTCAGATAAAAGAAGTTATTTTGTGGTGAAACAATAAATGAAT
AAATCAGAATGCATGACTGTTTCAGCTTTCTATGAATTGGACTAGCAGAGATGTCTTAGA
AATAATGTTCATTTTTTCAGTAATGCATGAATACATCAATTGTTACTATTATTGTGTACT
TTTCTGGTCAACTTTCTCTTGGACATTCCTTCAAAAAAACATTCCCTTAGATAATTATGA
TCTTTTGGAACTGTTTTTTGTTTTCAGCTGCAGATACCTTAATGAAGGCAGTGATGGTGA
CAATGCTCCAGAAACAAGCAGTGATGTAAGCAATGAGAGTGACAATGACAATGACAATGA
AAGGTCTATTGGAAGAACAACCCAATGTTTAGTAGAAAATATTTGCACCGATCAAGAAAG
GTTGTCCAGTGATGACTGTGATTCCAGTAACCAGGAACCTCCCCCTGTTTTCCAATATAT
GGAGCATGATGCACCATATGGAAGACAACCATTAGCAGATATGATTTCAGTATTTGCATG
TAAGTTTCCTGATCTAAATACATACAAGAGCTGTGATCTTCTCCCGTCCAGTTGGATCTC
TGTAGCCTGGTATCCCATATACCGGATACCAACAGGACCTACGCTACAAGATCTAGATGC
TTGCTTTTTAACATTCCATTCATTGTCAACAACACCTGATGGTACGATAAGCGGTTGTCC
TGAGACAAATAACTTACATAACAGTAAAGTTGCTTCTGTTCCTGGGAAGATCACACTGCC
TCTGATCGGCCTAGCATCTTACAAATTAAATGGTTCCTTGTGGACGTCAAATCAGCACCA
TGAGCAGCAGTTGACTACGTCGCTTCTGAAAGCTGCTGATGACTGGCTTTGCCAGCGGCA
AGTAGATCACCCAGATTACCGCTTCTTCCTCACACACTAAATTGGATGTCCATCCAAACT
ACCTACCTACTGAACATCACAGCTCGATGCCCACTATTTTATTCAATGAACTTACATTAT
CACTTTATATAGTCCACAATCACAAGTACCAGTATGCTCTGTAATATCATTTTTGGGGCT
TAGTTTATGTTAGTCCCATATTGGTATCTAGGCAGGATTAGTTGGTGACTGTTTTGGGGT
TGTACTGTAGGAACCAATTAGACATAGATCACCTATATTACGTTCAGTACCAATTGCGGG
TGTGGGTGATCTGCAATCGGGCTAAGTAGGAGATTGATTGGCAATATACATTTGGCGTAC
TTCAAAGGCGGTTCTAGGATATATTGATGATGGCGATAAAAATATTTTTCTACTTCCCTC
TGTGTGTTTGATATATTGTAACCCATGTAGTGCTGCTGCTGGATTGTTATTATATGTATT
ACCCCGAGAACGTATCATGTGTTACCACAGGTTAGGCTGTGTGACATCATGTGATGAAAT
TTTGGTTTGAAATGAAATTGGCAC