Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040583_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:51559677:51568254:1 gene:Zm00001d040583 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-sialoglycoprotein endopeptidase

Sequence

ATGATTGCGGTCGCCGACGCTATCATAACGACCAGGGTTGGGGCCACGTTTGTCAAGGGG
GCCGCCCAAGCAGCAAGAGACCTTGAGGGCAACGCCTCCGAGGCTTCAACTCTGGCCGTC
CCCGGTGGTAGCTCCACCGACGCCGCGTCCAAGGCCGAGGGAACACCGCCGCTCCCGCTA
CCTGGCTGCACTACCCTCCTCTTCTTGGACAATGCCTTCCTCGCACCCGGGACGAGGGTA
GAGAAGCGGGGGGCACTGCAGAATCATAAGATCGTCACCGGAGGACACAACCTTCTTGTT
CTCGCTCATGGTCTTGGGCATTACATTCAACTGGGGACTACTATAGATGATGCGATTGGT
GAGGCATATGACAAATCAGCAAGATGGTTGGGCCTTGATATGCGGAAAGGTGGTGGTCCT
GCTCTTGAAGAGCTTGCTCTAGAAGGTGATCCAAATGCTGTTAAGTTCAGAGTTCCAATG
CGACAGCATAAAGATTGCAATTTTTCTTATGCTGGACTGAAGACTCAAGTTCGATTGGCA
ATTGAATCTAAGAACTTATGTACAGAGGATATTCCCGTTTCGGCTGCATCGGAGGAGGAC
AGACAATCAAGGGCGAACATTGCTGCCTCTTTTCAGGTTGTTTCAGGAGGTGTCGCATCA
AACAAGTATGTTACGACTCGCTTGAATCATGTTGCTGGGAATAATGGCCTACAACTTGTA
TCTCCTCCTCCAAGCCTTTGTACTGACAATGGTGTCATGATTGCTTGGACTGGGATTGAG
CATTTTGTTGCCGGGAGGTTTGAGGACCCACCTGCTGCTGATGAGTCTGATGATATGCAG
TATGAGCTGCGGCCAAGATGGCCTCTTGGTGAGGAATATTCAAAAGGAAGAAGTGTTGCA
CGATCATTGAAGACTGCTCGAGTCCATCCATCACTAACGTCCATGATACAGGGCTCCCTT
CAAAAGTAG

Peptide Sequence

PEP ID

Zm00001d040583_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:51559677:51568254:1 gene:Zm00001d040583 transcript:Zm00001d040583_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-sialoglycoprotein endopeptidase

Sequence

MIAVADAIITTRVGATFVKGAAQAARDLEGNASEASTLAVPGGSSTDAASKAEGTPPLPL
PGCTTLLFLDNAFLAPGTRVEKRGALQNHKIVTGGHNLLVLAHGLGHYIQLGTTIDDAIG
EAYDKSARWLGLDMRKGGGPALEELALEGDPNAVKFRVPMRQHKDCNFSYAGLKTQVRLA
IESKNLCTEDIPVSAASEEDRQSRANIAASFQVVSGGVASNKYVTTRLNHVAGNNGLQLV
SPPPSLCTDNGVMIAWTGIEHFVAGRFEDPPAADESDDMQYELRPRWPLGEEYSKGRSVA
RSLKTARVHPSLTSMIQGSLQK

Transcript Sequence

Transcript ID

Zm00001d040583_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:51559677:51568254:1 gene:Zm00001d040583 gene_biotype:protein_coding transcript_biotype:protein_coding description:O-sialoglycoprotein endopeptidase

Sequence

ATGATTGCGGTCGCCGACGCTATCATAACGACCAGGGTTGGGGCCACGTTTGTCAAGGGG
GCCGCCCAAGCAGCAAGAGACCTTGAGGGCAACGCCTCCGAGGCTTCAACTCTGGCCGTC
CCCGGTGGTAGCTCCACCGACGCCGCGTCCAAGGCCGAGGGAACACCGCCGCTCCCGCTA
CCTGGCTGCACTACCCTCCTCTTCTTGGACAATGCCTTCCTCGCACCCGGGACGAGGGTA
GAGAAGCGGGGGGCACTGCAGAATCATAAGATCGTCACCGGAGGACACAACCTTCTTGTT
CTCGCTCATGGTCTTGGGCATTACATTCAACTGGGGACTACTATAGATGATGCGATTGGT
GAGGCATATGACAAATCAGCAAGATGGTTGGGCCTTGATATGCGGAAAGGTGGTGGTCCT
GCTCTTGAAGAGCTTGCTCTAGAAGGTGATCCAAATGCTGTTAAGTTCAGAGTTCCAATG
CGACAGCATAAAGATTGCAATTTTTCTTATGCTGGACTGAAGACTCAAGTTCGATTGGCA
ATTGAATCTAAGAACTTATGTACAGAGGATATTCCCGTTTCGGCTGCATCGGAGGAGGAC
AGACAATCAAGGGCGAACATTGCTGCCTCTTTTCAGGTTGTTTCAGGAGGTGTCGCATCA
AACAAGTATGTTACGACTCGCTTGAATCATGTTGCTGGGAATAATGGCCTACAACTTGTA
TCTCCTCCTCCAAGCCTTTGTACTGACAATGGTGTCATGATTGCTTGGACTGGGATTGAG
CATTTTGTTGCCGGGAGGTTTGAGGACCCACCTGCTGCTGATGAGTCTGATGATATGCAG
TATGAGCTGCGGCCAAGATGGCCTCTTGGTGAGGAATATTCAAAAGGAAGAAGTGTTGCA
CGATCATTGAAGACTGCTCGAGTCCATCCATCACTAACGTCCATGATACAGGGCTCCCTT
CAAAAGTAGTTGAGTTGGAAGTTGGAAACTAATTATTGGTCTCAGCTGCTTTATGCAGTT
GAGTTTCCCGTCTTCTAGTTTTGGGTTCACAAATCAGCTGATTTATCTGTATTCGCTGAA
TTGAAGTAACAAACCTGCAAAAGGGCCGAACTAGTTTAATAGTAGATGAGGCTATATACA
AATTCAGTTCATACCAGTGTTTTTAAGGCGTTGCCTAGGTGATGTCTAGGCGTCTAGGCG
CTCGAATAATTCTAGTCGCCTTGCTTGCCTACGCGTCCAGGCGGTGGTCTAACGTCTCGC
CTTACCGTATTAAGAACATTGGTTCATACATACCAGAAGATGCTTATACTCCATTTGTGT
TTACCATGGAGGCTGGCTGTATCAGGCCCCACGCATTTTGAATGTAGTGTATATTTCTTG
TTTCTTAAGGCCTTCGATCCGAACATATCATTAGTCATTACTTTGCAATGCCACTAAGGT
TGATTGTGATGTTCATACGGGCAACCAAAGTTTTTAAAATGTGGATTGTATTCTTTAGAC
ATGAATTGAGAATTGAGAACAAATATGGCCTTGGTGTCGAAGATTAATGATGACATAAGA
TTATTGTGTTTAATGTGCAAGTGATTAATGTGTGTTTTGCAGGGGATAGGTCATAAATGG
GCAAATTGAGTTAGGTCACAAATAACTCACGGGTTTGAGAGTTGGCAGATCTCTTGGGGT
GGTCTGGTCTGTACGTTGAGGCATGGATCTGAGAGTTCTACGCCTCCTTTGGATGCAGCT
GAACCACAATTTCTTTAGTTC