Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d040542_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:48843790:48845484:-1 gene:Zm00001d040542 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGAGCACGGGAGGCGGCACCACCTTGCGCGAGCTGACGGCCCTCCTCTCCACGCTGCGC CGCGCGCGACTCCAACACCCCGCTCACGCTGCGCAGCTCCACGCCCGCCTCCTCATCTCT GCTGGCGCGCGTCCTCACCCGCACCCGGTCCTCCTCACGCAGCTCGTCTCCCTCTACGCC GCCGCGGGCCGCCTCGCCGACGCGCTCCGCGCCTTCCGCGCCCATCTACCCAGCGCCAAC CTGCACACCTATGCCGTCCTCGTCTCCGCCTTCGCGCGGCCGTACCCGGACCTCGCGTTC TCCCTCTTCTCGGGCTCGCGCCGCCAGCTCCGCCCCAGCCCCCATGTCATCTCCGCCGTG CTCGCCGCATGCGCCGGCCTCCAGCCTCTCTGCGGACGCCAGGTCCACACGTGCGCGGCC AAGGTCGTACCGCCCGGCGATGTGTTCGTCTACACCGGGATGGTCGACGTGTACGCCAAG GGCGGGGACATGGAGTCGTCCAGAAAGGTGTTCGATGAAATGCTGAACCGGGGCGCGGCG TCGTGGAACGCGCTCCTCGTTGGTTACGCCAGGAACAAGATGTGCCTCGAAGCCCTGTCG GTGTTCAGGGAGTTGGCCGCGCAGGGGCGGGAGGTGTCTCTCGATCAGGTGAGCGTGTCG AGTGTGCTCAGCGCTTGCGCTGTGGCAGGGGCCCTGAACTATGGTCGCCAGGTACACGCG TGCGCTACCAAGGTAGGGCTGGAGCTCAGCGCGGTTTGTGTCAGCAACGCTCTTCTTGAC ATGTACACCAGGTGTGGATGCTCACGAGAATCTTCCGCTCTGCTAAATGCTGTGGGTTGC AGGGATGTTGTCACCTGGAACATCATCATTCGTAGCTGCATTCATGACAATCGGTTCAAG GAAGCTTGTGTGCTGTTCCGGTCCATGGTCAGGAACGGTACCTTGCCGGATGATGTAGCC TTTGCTACTGTGTTGCAGGCATCAGCGTGTATGTCGGCATGGGCTATAGGAGCAAGCATG CATGCCTCCGTCGTGAAGACAGGGTTCTTATACAGTGATGGCGTCACTAGCTCGCTAATC ACCATGTATTCCAAATGTGGCTGCTTGGACGATGCACACCGAGCATTTGTGGGGGCAAAA GATCATCTGCATATAATGTCCTGGACGGCCATGATAACTGCACTGCAGCAGCATGGACAT GGCATGCAGGCAATTGATGTATTTGAGAATATGCTAGAGAATGGCATTCCTCCTGACCAC ATCACATTTGTGAGTGTTCTCTCTTCCTGTAGCCACAGCGGACTTGTTGAGCAAGGACGC AGGTACTTCGATTCGATGACTCGAGTTCATAAGATCACACCACAGAATGAGCACTATGCG TGCATGGTTGACATGTTTGGGCGAGCAGGCCTTCTAACTGAGGCAAAGCGATTCATTCAC CAGATGGGACCTAAGCAAGATGCATCAGTCCTTGGGGCACTCCTTTGGGCTTGCATGAAC TGCAGGGACCTTGAGATGGGTAAGGAGGTTGCCAAGAAGCTTTTTGTGATTGAGCCAGGT AATACCGGGAACTATGTCCTGCTTGCTAATATCTATACGTCACATGGAAGATTGGAGGAG GCAAAGGAGGTGCGGAGGTGGATGATGTTTCAGGAGTTAAGGAAGGAAAAGGGATGCAGT TTAATCAACAATTGA

Peptide Sequence

PEP ID	Zm00001d040542_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:48843790:48845484:-1 gene:Zm00001d040542 transcript:Zm00001d040542_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	MSTGGGTTLRELTALLSTLRRARLQHPAHAAQLHARLLISAGARPHPHPVLLTQLVSLYA AAGRLADALRAFRAHLPSANLHTYAVLVSAFARPYPDLAFSLFSGSRRQLRPSPHVISAV LAACAGLQPLCGRQVHTCAAKVVPPGDVFVYTGMVDVYAKGGDMESSRKVFDEMLNRGAA SWNALLVGYARNKMCLEALSVFRELAAQGREVSLDQVSVSSVLSACAVAGALNYGRQVHA CATKVGLELSAVCVSNALLDMYTRCGCSRESSALLNAVGCRDVVTWNIIIRSCIHDNRFK EACVLFRSMVRNGTLPDDVAFATVLQASACMSAWAIGASMHASVVKTGFLYSDGVTSSLI TMYSKCGCLDDAHRAFVGAKDHLHIMSWTAMITALQQHGHGMQAIDVFENMLENGIPPDH ITFVSVLSSCSHSGLVEQGRRYFDSMTRVHKITPQNEHYACMVDMFGRAGLLTEAKRFIH QMGPKQDASVLGALLWACMNCRDLEMGKEVAKKLFVIEPGNTGNYVLLANIYTSHGRLEE AKEVRRWMMFQELRKEKGCSLINN

Transcript Sequence

Transcript ID	Zm00001d040542_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:48843790:48845484:-1 gene:Zm00001d040542 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein
Sequence	ATGAGCACGGGAGGCGGCACCACCTTGCGCGAGCTGACGGCCCTCCTCTCCACGCTGCGC CGCGCGCGACTCCAACACCCCGCTCACGCTGCGCAGCTCCACGCCCGCCTCCTCATCTCT GCTGGCGCGCGTCCTCACCCGCACCCGGTCCTCCTCACGCAGCTCGTCTCCCTCTACGCC GCCGCGGGCCGCCTCGCCGACGCGCTCCGCGCCTTCCGCGCCCATCTACCCAGCGCCAAC CTGCACACCTATGCCGTCCTCGTCTCCGCCTTCGCGCGGCCGTACCCGGACCTCGCGTTC TCCCTCTTCTCGGGCTCGCGCCGCCAGCTCCGCCCCAGCCCCCATGTCATCTCCGCCGTG CTCGCCGCATGCGCCGGCCTCCAGCCTCTCTGCGGACGCCAGGTCCACACGTGCGCGGCC AAGGTCGTACCGCCCGGCGATGTGTTCGTCTACACCGGGATGGTCGACGTGTACGCCAAG GGCGGGGACATGGAGTCGTCCAGAAAGGTGTTCGATGAAATGCTGAACCGGGGCGCGGCG TCGTGGAACGCGCTCCTCGTTGGTTACGCCAGGAACAAGATGTGCCTCGAAGCCCTGTCG GTGTTCAGGGAGTTGGCCGCGCAGGGGCGGGAGGTGTCTCTCGATCAGGTGAGCGTGTCG AGTGTGCTCAGCGCTTGCGCTGTGGCAGGGGCCCTGAACTATGGTCGCCAGGTACACGCG TGCGCTACCAAGGTAGGGCTGGAGCTCAGCGCGGTTTGTGTCAGCAACGCTCTTCTTGAC ATGTACACCAGGTGTGGATGCTCACGAGAATCTTCCGCTCTGCTAAATGCTGTGGGTTGC AGGGATGTTGTCACCTGGAACATCATCATTCGTAGCTGCATTCATGACAATCGGTTCAAG GAAGCTTGTGTGCTGTTCCGGTCCATGGTCAGGAACGGTACCTTGCCGGATGATGTAGCC TTTGCTACTGTGTTGCAGGCATCAGCGTGTATGTCGGCATGGGCTATAGGAGCAAGCATG CATGCCTCCGTCGTGAAGACAGGGTTCTTATACAGTGATGGCGTCACTAGCTCGCTAATC ACCATGTATTCCAAATGTGGCTGCTTGGACGATGCACACCGAGCATTTGTGGGGGCAAAA GATCATCTGCATATAATGTCCTGGACGGCCATGATAACTGCACTGCAGCAGCATGGACAT GGCATGCAGGCAATTGATGTATTTGAGAATATGCTAGAGAATGGCATTCCTCCTGACCAC ATCACATTTGTGAGTGTTCTCTCTTCCTGTAGCCACAGCGGACTTGTTGAGCAAGGACGC AGGTACTTCGATTCGATGACTCGAGTTCATAAGATCACACCACAGAATGAGCACTATGCG TGCATGGTTGACATGTTTGGGCGAGCAGGCCTTCTAACTGAGGCAAAGCGATTCATTCAC CAGATGGGACCTAAGCAAGATGCATCAGTCCTTGGGGCACTCCTTTGGGCTTGCATGAAC TGCAGGGACCTTGAGATGGGTAAGGAGGTTGCCAAGAAGCTTTTTGTGATTGAGCCAGGT AATACCGGGAACTATGTCCTGCTTGCTAATATCTATACGTCACATGGAAGATTGGAGGAG GCAAAGGAGGTGCGGAGGTGGATGATGTTTCAGGAGTTAAGGAAGGAAAAGGGATGCAGT TTAATCAACAATTGA