Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040503_T012
CDS Infomation

cds chromosome:B73_RefGen_v4:3:47226160:47241123:-1 gene:Zm00001d040503 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

ATGATCCTCATCTGCCAGAACCTCCGCAACAACCTGCAGAGTCCCAACGAGTACATCCGC
GGCGTCACGCTGCGGTTCCTCTGCAGGCTCTCCGAGCCCGAGGTGCTCGAGCCGCTCGTG
CCGTCCGTGCTTGCGAACCTCGAGCACAGGCACCACTTCATCAGGAGACACGCTGTCTCC
TCCGTATCCGCGATCTACCGCCTCCCGCATGGGGACCAGCTCATCCCGGACGCGCCGGAG
CTCGTCGAGCGGTTCCTCGCATCTGAGCAGGACGCGTCCGCGCGGAGGAACGCATTCCTC
ATGCTCTGTGCATGTGCACAGGACCGCGCTGTCGCCTACCTGCTCTCAAACGCCGACCGG
GTTGCTGAGTGGCCCGATCTACTGCAGATGGCCGTTGTGGATCTCATCCGCAAGGTCTGC
CGATCCCAGAACCGTGCCAACAAGGGAAGGTATATCACCATCATTACCTCGCTGCTCTCC
ACGCCCAGCACAGCGGTTGTTTATGAATGTGCTGGCGCGCTGGTGTCACTCTCTTCAGCA
CCCACGGCAGTGCGAGCCGCTGCCAACACCTACTGCCAGTTGCTCTCTTCGCAGAGTGAC
AACAATGTGAAGCTCATTCTACTGGATCGCCTCAACGAGCTGCACACTTTGCACCGGGAT
GTCATGGTGGGGGTGGTAATGGATGTGCTTCGTGCACTGGCCAGCCCCAACTTAGATGTC
AAGAGAAAGGTTCTTGATTTAGTTCTCGATCTGCTCACCCCGCGTAATGTTGAGGAGGTG
GTGCTTTATCTCAAGAAGGAGGTGGTCAAGACGCAAGCTGGAGACCTCGAGAAGGGTGGC
GAGTACCGTCAGATGCTGGTGCAGGCCATCCATGCCTGTGCTGTTGAGTACTCAGAGGTG
GCTGGGTCTGTAGTACACCTCCTTATGGACTTCCTTGGAGACACCAATGTTGCTGCAGCT
GTTGATGTTGTTCTGTTTGTACGTGAGATCATTGAGACCAATCCAAAGCTGCGTGTTTCC
ATGATCCAGAGGCTAATTGATACATTCTACCAGATTCGAGCATCCCGGGTCTGCTCATGT
GCTCTCTGGATTCTTGGGGAGTACTCCCTCTCTCTATCAGAGGTTGAAAGTGCCATTGCT
ACCATTAAACAATGTCTTGGGGATCTACCATTCTACACTGTATCTGATGAAGGGGAGGCA
ACTGATTCTGCTAAGCCAGCCAAGGCAGTGGTGAACTCTGTCACTGTATCTTCCAGGCGG
CCTGTTGTTCTTGCAGATGGCACTTATGCCACACAAAGCGCTGCTACTGAGACCATTTTG
ACTCCATCAGTTGCTCCTGGGTCATTGGCATCAACCCTGAACCTCAGATCACTCATTCTA
TCAGGTGATTTCTTTCTGGCTGCTGTTGTTGCATGTACCCTGGCCAAGCTTGTGCTGAGG
CTGGAAGAAGTGCAGCCATCTAAGGTTGAGTCAAACAAGGCTTGCACTGGAGCATTGCTG
ATCATGACATCGATTCTGCAGCTGGGCCAGTCTTCTTACCTTCCCCACCCAATTGATAAT
GATTCATATGATAGGATTGTGCTGTGTGTGAGATTGCTTTGCAATACTGGTGATGATGTC
AGGAAGATTTGGTTGCAGTCATGCAGACAGAGCTTTGCGAAAATGCTTGCTGAGAAGCAG
TTCAGGGAGACAGAGGAGATGAAGGCAAAGGCACAGATCTCTCATGCCCAGCCAGATGAT
CTTATTGATTTTTACCACCTGAAGAGCAGGAAGGGCATGAGCCAGCTTGAGTTGGAAGAT
GAGGTGCATGATGATTTGAAGGCTGCAACTGGTGGGTTTACCAAGGATGCAGATGACGCA
AACAAGCTCAACCGCATTCTTCAATTGACTGGGTTCAGTGATCCTGTGTATGCTGAAGCA
TTTGTAACAGTTCACCATTATGACATTGTACTTGATGTTACTGTAATTAATCGCACAAAG
GAGACACTTCAGAACTTGTGCTTGGAATTGGCTACAATGGGAGACCTCAAACTTGTTGAC
CGCCCTCAGAACTACACCTTGGCTCCTGAGTCTAGCAAACAGATCCGCGCTAATATCAAG
GTTTCATCAACAGAGACTGGAGTTATATTTGGCAACATAGTTTACGAGACTTCAAATGTG
ATGGAACGATCAGTGGTTGTCCTAAATGATATTCACATCGACATCATGGATTACATCTCA
CCTGCTACCTGTGCTGATGTTACTTTCCGGAACATGTGGGCAGAATTTGAATGGGAAAAT
AAGGTGGCAGTGAATACTGTGATTCAAGACGAGAAGGAATTCTTGAATCACATTATCAAG
TCAACAAACATGAAGTGTCTGACACCACCGTCTGCACTAGACGGAGAATGTGGTTTCCTT
GCTGCTAATCTTTATGCAAAGAGTGTGTTTGGTGAGGATGCTTTGGTGAACATCAGCATT
GAGAAGCAACATGATGGCAAGCTCAGTGGTTACATCCGAATAAGGAGCAAGACCCAGGGA
ATTGCACTCAGCTTAGGTGACAAGATTACTCTCAAGCAGAAGGGTGGCAGTTAA

Peptide Sequence

PEP ID

Zm00001d040503_P012
PEP Infomation

pep chromosome:B73_RefGen_v4:3:47226160:47241123:-1 gene:Zm00001d040503 transcript:Zm00001d040503_T012 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

MILICQNLRNNLQSPNEYIRGVTLRFLCRLSEPEVLEPLVPSVLANLEHRHHFIRRHAVS
SVSAIYRLPHGDQLIPDAPELVERFLASEQDASARRNAFLMLCACAQDRAVAYLLSNADR
VAEWPDLLQMAVVDLIRKVCRSQNRANKGRYITIITSLLSTPSTAVVYECAGALVSLSSA
PTAVRAAANTYCQLLSSQSDNNVKLILLDRLNELHTLHRDVMVGVVMDVLRALASPNLDV
KRKVLDLVLDLLTPRNVEEVVLYLKKEVVKTQAGDLEKGGEYRQMLVQAIHACAVEYSEV
AGSVVHLLMDFLGDTNVAAAVDVVLFVREIIETNPKLRVSMIQRLIDTFYQIRASRVCSC
ALWILGEYSLSLSEVESAIATIKQCLGDLPFYTVSDEGEATDSAKPAKAVVNSVTVSSRR
PVVLADGTYATQSAATETILTPSVAPGSLASTLNLRSLILSGDFFLAAVVACTLAKLVLR
LEEVQPSKVESNKACTGALLIMTSILQLGQSSYLPHPIDNDSYDRIVLCVRLLCNTGDDV
RKIWLQSCRQSFAKMLAEKQFRETEEMKAKAQISHAQPDDLIDFYHLKSRKGMSQLELED
EVHDDLKAATGGFTKDADDANKLNRILQLTGFSDPVYAEAFVTVHHYDIVLDVTVINRTK
ETLQNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNV
MERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQDEKEFLNHIIK
STNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQHDGKLSGYIRIRSKTQG
IALSLGDKITLKQKGGS

Transcript Sequence

Transcript ID

Zm00001d040503_T012
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:47226160:47241123:-1 gene:Zm00001d040503 gene_biotype:protein_coding transcript_biotype:protein_coding description:Retrovirus-related Pol polyprotein LINE-1
Sequence

TCCGGCCGGCCGCGCCCTGCCGGAGATGATCCTCATCTGCCAGAACCTCCGCAACAACCT
GCAGAGTCCCAACGAGTACATCCGCGGCGTCACGCTGCGGTTCCTCTGCAGGCTCTCCGA
GCCCGAGGTGCTCGAGCCGCTCGTGCCGTCCGTGCTTGCGAACCTCGAGCACAGGCACCA
CTTCATCAGGAGACACGCTGTCTCCTCCGTATCCGCGATCTACCGCCTCCCGCATGGGGA
CCAGCTCATCCCGGACGCGCCGGAGCTCGTCGAGCGGTTCCTCGCATCTGAGCAGGACGC
GTCCGCGCGGAGGAACGCATTCCTCATGCTCTGTGCATGTGCACAGGACCGCGCTGTCGC
CTACCTGCTCTCAAACGCCGACCGGGTTGCTGAGTGGCCCGATCTACTGCAGATGGCCGT
TGTGGATCTCATCCGCAAGGTCTGCCGATCCCAGAACCGTGCCAACAAGGGAAGGTATAT
CACCATCATTACCTCGCTGCTCTCCACGCCCAGCACAGCGGTTGTTTATGAATGTGCTGG
CGCGCTGGTGTCACTCTCTTCAGCACCCACGGCAGTGCGAGCCGCTGCCAACACCTACTG
CCAGTTGCTCTCTTCGCAGAGTGACAACAATGTGAAGCTCATTCTACTGGATCGCCTCAA
CGAGCTGCACACTTTGCACCGGGATGTCATGGTGGGGGTGGTAATGGATGTGCTTCGTGC
ACTGGCCAGCCCCAACTTAGATGTCAAGAGAAAGGTTCTTGATTTAGTTCTCGATCTGCT
CACCCCGCGTAATGTTGAGGAGGTGGTGCTTTATCTCAAGAAGGAGGTGGTCAAGACGCA
AGCTGGAGACCTCGAGAAGGGTGGCGAGTACCGTCAGATGCTGGTGCAGGCCATCCATGC
CTGTGCTGTTGAGTACTCAGAGGTGGCTGGGTCTGTAGTACACCTCCTTATGGACTTCCT
TGGAGACACCAATGTTGCTGCAGCTGTTGATGTTGTTCTGTTTGTACGTGAGATCATTGA
GACCAATCCAAAGCTGCGTGTTTCCATGATCCAGAGGCTAATTGATACATTCTACCAGAT
TCGAGCATCCCGGGTCTGCTCATGTGCTCTCTGGATTCTTGGGGAGTACTCCCTCTCTCT
ATCAGAGGTTGAAAGTGCCATTGCTACCATTAAACAATGTCTTGGGGATCTACCATTCTA
CACTGTATCTGATGAAGGGGAGGCAACTGATTCTGCTAAGCCAGCCAAGGCAGTGGTGAA
CTCTGTCACTGTATCTTCCAGGCGGCCTGTTGTTCTTGCAGATGGCACTTATGCCACACA
AAGCGCTGCTACTGAGACCATTTTGACTCCATCAGTTGCTCCTGGGTCATTGGCATCAAC
CCTGAACCTCAGATCACTCATTCTATCAGGTGATTTCTTTCTGGCTGCTGTTGTTGCATG
TACCCTGGCCAAGCTTGTGCTGAGGCTGGAAGAAGTGCAGCCATCTAAGGTTGAGTCAAA
CAAGGCTTGCACTGGAGCATTGCTGATCATGACATCGATTCTGCAGCTGGGCCAGTCTTC
TTACCTTCCCCACCCAATTGATAATGATTCATATGATAGGATTGTGCTGTGTGTGAGATT
GCTTTGCAATACTGGTGATGATGTCAGGAAGATTTGGTTGCAGTCATGCAGACAGAGCTT
TGCGAAAATGCTTGCTGAGAAGCAGTTCAGGGAGACAGAGGAGATGAAGGCAAAGGCACA
GATCTCTCATGCCCAGCCAGATGATCTTATTGATTTTTACCACCTGAAGAGCAGGAAGGG
CATGAGCCAGCTTGAGTTGGAAGATGAGGTGCATGATGATTTGAAGGCTGCAACTGGTGG
GTTTACCAAGGATGCAGATGACGCAAACAAGCTCAACCGCATTCTTCAATTGACTGGGTT
CAGTGATCCTGTGTATGCTGAAGCATTTGTAACAGTTCACCATTATGACATTGTACTTGA
TGTTACTGTAATTAATCGCACAAAGGAGACACTTCAGAACTTGTGCTTGGAATTGGCTAC
AATGGGAGACCTCAAACTTGTTGACCGCCCTCAGAACTACACCTTGGCTCCTGAGTCTAG
CAAACAGATCCGCGCTAATATCAAGGTTTCATCAACAGAGACTGGAGTTATATTTGGCAA
CATAGTTTACGAGACTTCAAATGTGATGGAACGATCAGTGGTTGTCCTAAATGATATTCA
CATCGACATCATGGATTACATCTCACCTGCTACCTGTGCTGATGTTACTTTCCGGAACAT
GTGGGCAGAATTTGAATGGGAAAATAAGGTGGCAGTGAATACTGTGATTCAAGACGAGAA
GGAATTCTTGAATCACATTATCAAGTCAACAAACATGAAGTGTCTGACACCACCGTCTGC
ACTAGACGGAGAATGTGGTTTCCTTGCTGCTAATCTTTATGCAAAGAGTGTGTTTGGTGA
GGATGCTTTGGTGAACATCAGCATTGAGAAGCAACATGATGGCAAGCTCAGTGGTTACAT
CCGAATAAGGAGCAAGACCCAGGGAATTGCACTCAGCTTAGGTGACAAGATTACTCTCAA
GCAGAAGGGTGGCAGTTAACTTTGACAAGTGCTGCAGTTGTATCATCATTTTTCTCTTTT
AGGAAATCCACGTGCCAGAGATACCAGTGCCGTGGCATTGAATTGAGTATAAATGTTTTT
TTGTACAAAAGGATCAAAGAAACAGATAAGACGACAGTTATGAGGAAGTCACGAAGTTCT
CGGTCGAAGATCCATGTTGCTGTAGTAACGATGCTGTTCCAACTTCCTT