Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040456_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:44228032:44234125:-1 gene:Zm00001d040456 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 1
Sequence

ATGGCGTCCGAGCGCCCGCTCCTCATCGCCACAACCCCGGGCGCCTCAACCCCCGACGAC
GCCCCCTCGCCGCATCCCCCAGCGGCGTCACTGCTCCCGCCGGCCCAGTCGGAGCCTCCT
CTCCGCGCAGACCGTCTCGCCTTCTCCGTGGAGATCCCCGACCCATTCCGCTCCTACCGC
CGTGGCGACGGACCCGCCGCCGACCCATCCGCGTCGTTGGAGAGGGAACGTGATGTCGGG
GATGACGAATCCCGAGAGGTCATCGTGGGAGAGTCCTCACCGGAGTTCTCTGGGAACGCC
ATCCGAACGGCAAAGTACTCGTTCCTCACCTTTCTACCGCGGAACCTCTTCGAACAGTTC
CGGCGGCTGTCGTACGTCTACTTCCTCGCAATCACTGTGCTTAACCAGCTGCCCCAGGTC
GCTGTCTTCGGCCGCGGTGCGTCCGTGCTACCACTCGCCTTCGTGCTCTTCGTCACTGCC
GTAAAGGACGCCTACGAGGATTTCCGCCGCCACCGTTCCGACCGCCAGGAGAACAACCGC
CTTGCCACCGTGCTCGCACTGGGCACAGCTGGCGAGTTCCAGCCCAAGAGATGGAAGCAC
ATACGCGTCGGGGACGTGGTACGGATCGAGTCCAATGAGACACTGCCGGCCGATATGGTG
CTGCTTGCTACCAGCGATCCCACCGGTGTTGCGCACGTCCAGACTGTGAATCTCGATGGG
GAGACCAATCTTAAGACGAGGTATGCCAAGCAGGAGACACATGTCATGTTCTCCCAGAAT
GGTGGTGTTGGTGGCGTCCTGCATTGCGAACGACCCAACAGGAACATTTACGGATTCCAA
GCAAATCTTGAGATTGATGGCAAGCGTGTCTCGCTTGGGCCATCCAACATTGTTCTTCGT
GGCTGTGAACTCAAGAACACCACATGGGCAATAGGGGTTGTGGTATATGCTGGGAAGGAG
ACCAAGGTGATGCTAAATAGCTCAGGGGCGCCATCGAAGCGGAGTCGCTTGGAAACACAG
TTGAATCGGGAGACTGTCATATTATCTATTATGCTTATTGGGATGTGCACAACTGCATCC
GTGCTTGCTGGGATTTGGCTGCTGAATCACCGGAGGGAGCTGGAGTTCACCCAATTCTTC
AGGGAGAAGGACTATACAACTGGGAAAAACTACAACTATTATGGTGTTGGGATGCAGATA
TTCATCACATTCCTTATGGCAGTGATAGTGTATCAGGTTATCATTCCTATCTCATTGTAT
ATATCAATGGAGCTGGTAAGGCTTGGACAGGCATATTTCATGGGTGCTGATAAAGATCTG
TATGATGAGTCATCAAGGTCAAAGTTCCAGTGCAGAGCTTTGAATATAAATGAGGATTTA
GGGCAAATAAGGTATGTGTTCTCTGACAAGACTGGGACACTAACGGAGAACAAGATGGTC
TTCCAGTGTGCGTCAATTCGTGGGGTTGATTACAACTCTGGTAAAGATACAGGTGGATAC
TCGGTTGTAGTCGGTGATCATCTGTGGACACCAAAGATGTCAGTTAAAATTGACCCTGAG
CTCGTGAAACTACTCAGGGATGGTGGTTCAAATGAGGAACCAAAGCTTGTTCTTGAATTC
TTACTTGCTCTTGCTTCCTGTAATACCATAGTGCCGCTTGTCCTTGACACTAGAGACTCA
AAACAGAAGTTGATTGACTATCAGGGTGAGTCCCCTGATGAACAGGCACTAGCATATGCT
GCAGCATCTTATGGCATTGTCCTTGTTGAGCGAACATCTGGTTACATAGTGATTGATGTC
CTTGGTGACAGGCAGAGATTTGATATACTGGGACTTCATGAGTTTGATAGTGATCGTAAG
AGAATGTCTGTTATCGTGGGCTGCCCTGATAAGACTGTTAAGCTGTATGTGAAAGGTGCG
GACAGTTCAGTATTTGGAATTACAAACAATTCATCTGAATTGGACATTGTTCGTGCTACA
GAGGCACATCTCCATAAGTACTCTTCACTTGGACTAAGAACTCTTGTTGTTGGTATGCGT
AAACTGAGTCAATCTGAGTTTGAGGAGTGGCAATTAGCTTATGAGAATGCCAGTACAGCA
GTACTTGGAAGAGGAAACTTACTCCGATCTGTTGCTGCAAACATAGAGATCAATGTCAAC
ATATTGGGGGCCACTGGGATTGAAGATAAGCTTCAAGATGGGGTTCCAGAAGCAATAGAA
TCTATTCGGCAAGCAGACATAAAGGTTTGGATTTTAACCGGAGACAAGCAGGAGACCGCA
ATTTCTATTGGGTACTCCTGTAAGCTGCTGACCAATGACATGACACAAATCGTTATAAAT
AACAATTCAAAGGAGTCATGTCAGAGAAGTCTTGTGGAGGCGCTTGCTACAACTAAGAAG
CTCAGAGCCGCTTCATCAATTGGTACACAGGGTCCATTGTTAGCATCAGAAACTTCTAAT
GTAACTCTTGCTTTGATTGTAGATGGTAACAGTCTTGTTTACATTCTGGAGACAGATTTG
CAAGACGAGCTTTTCAAACTAGCAACTGAATGTAGTGTTGTCTTATGTTGCCGAGTGGCT
CCATTACAGAAGGCAGGGATAGTTGCCCTTATCAAGAACAGGACAAATGATATGACCTTA
GCAATTGGCGATGGCGCAAATGATGTTTCAATGATTCAAATGGCTGATGTTGGGATTGGC
ATCAGTGGCCAAGAAGGTCGACAAGCTGTTATGGCATCAGATTTTTCTATGGGACAATTT
AGATTTTTGGTTCCTCTTTTATTAGTTCATGGTCACTGGAATTATCAAAGGATGGCCTAT
ATGATCCTTTACAACTTTTACAAGAATGCTATGTTTGTCTTGGTTCTTTTCTGGTATGTA
CTTTATACAGCATTCACTTTGACAACTGCTATCACTGAGTGGAGTAGTCTCCTGTATACT
GTCCTGTATACATCCCTTCCAACGATTGTCGTCGGCATTCTTGACAAGGATCTTAATAAG
GCAACCCTGATAGCTTATCCAAAGCTATATGGATCTGGCCAGAGGGACGACAAGTACAAT
GTGAATTTGTTTGTGCTCAATATGCTTGAAGCACTCTGGCAGAGTTTGGTCGTTTTCTAC
TTGCCGTATTTTGCATATAGACGAAGCACAATAGATATGTCTAGTCTTGGAGACTTGTGG
GCACTTGCACCTGTCATTGTTGTAAATATGCAATTGGCCATGGACATTATTAGGTGGAAC
TGGATAATACATGCGTTTGTATGGGGCACAATAGCCGCAACAACAGTTTGTCTCTTTGTG
ATAGATTCGATATGGGTTCTT

Peptide Sequence

PEP ID

Zm00001d040456_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:44228032:44234125:-1 gene:Zm00001d040456 transcript:Zm00001d040456_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 1
Sequence

MASERPLLIATTPGASTPDDAPSPHPPAASLLPPAQSEPPLRADRLAFSVEIPDPFRSYR
RGDGPAADPSASLERERDVGDDESREVIVGESSPEFSGNAIRTAKYSFLTFLPRNLFEQF
RRLSYVYFLAITVLNQLPQVAVFGRGASVLPLAFVLFVTAVKDAYEDFRRHRSDRQENNR
LATVLALGTAGEFQPKRWKHIRVGDVVRIESNETLPADMVLLATSDPTGVAHVQTVNLDG
ETNLKTRYAKQETHVMFSQNGGVGGVLHCERPNRNIYGFQANLEIDGKRVSLGPSNIVLR
GCELKNTTWAIGVVVYAGKETKVMLNSSGAPSKRSRLETQLNRETVILSIMLIGMCTTAS
VLAGIWLLNHRRELEFTQFFREKDYTTGKNYNYYGVGMQIFITFLMAVIVYQVIIPISLY
ISMELVRLGQAYFMGADKDLYDESSRSKFQCRALNINEDLGQIRYVFSDKTGTLTENKMV
FQCASIRGVDYNSGKDTGGYSVVVGDHLWTPKMSVKIDPELVKLLRDGGSNEEPKLVLEF
LLALASCNTIVPLVLDTRDSKQKLIDYQGESPDEQALAYAAASYGIVLVERTSGYIVIDV
LGDRQRFDILGLHEFDSDRKRMSVIVGCPDKTVKLYVKGADSSVFGITNNSSELDIVRAT
EAHLHKYSSLGLRTLVVGMRKLSQSEFEEWQLAYENASTAVLGRGNLLRSVAANIEINVN
ILGATGIEDKLQDGVPEAIESIRQADIKVWILTGDKQETAISIGYSCKLLTNDMTQIVIN
NNSKESCQRSLVEALATTKKLRAASSIGTQGPLLASETSNVTLALIVDGNSLVYILETDL
QDELFKLATECSVVLCCRVAPLQKAGIVALIKNRTNDMTLAIGDGANDVSMIQMADVGIG
ISGQEGRQAVMASDFSMGQFRFLVPLLLVHGHWNYQRMAYMILYNFYKNAMFVLVLFWYV
LYTAFTLTTAITEWSSLLYTVLYTSLPTIVVGILDKDLNKATLIAYPKLYGSGQRDDKYN
VNLFVLNMLEALWQSLVVFYLPYFAYRRSTIDMSSLGDLWALAPVIVVNMQLAMDIIRWN
WIIHAFVWGTIAATTVCLFVIDSIWVL

Transcript Sequence

Transcript ID

Zm00001d040456_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:44228032:44234125:-1 gene:Zm00001d040456 gene_biotype:protein_coding transcript_biotype:protein_coding description:Phospholipid-transporting ATPase 1
Sequence

TCCCATCGCTGAGAATCCAAGTGCTGCCCCAATACCTCTACAGTCTACACCTGCTCTCTC
GACTCCCCCAAAGTCCTCACCTCCCCACCTGGCCACCTCTGCCTTTGACCTCGCCGGCGC
CAACCCAAACCCGCCGCCGCCGATGCCTCTGGCGCACTAGCTTCGCATCTCCGTCCTCAA
CATGGCGTCCGAGCGCCCGCTCCTCATCGCCACAACCCCGGGCGCCTCAACCCCCGACGA
CGCCCCCTCGCCGCATCCCCCAGCGGCGTCACTGCTCCCGCCGGCCCAGTCGGAGCCTCC
TCTCCGCGCAGACCGTCTCGCCTTCTCCGTGGAGATCCCCGACCCATTCCGCTCCTACCG
CCGTGGCGACGGACCCGCCGCCGACCCATCCGCGTCGTTGGAGAGGGAACGTGATGTCGG
GGATGACGAATCCCGAGAGGTCATCGTGGGAGAGTCCTCACCGGAGTTCTCTGGGAACGC
CATCCGAACGGCAAAGTACTCGTTCCTCACCTTTCTACCGCGGAACCTCTTCGAACAGTT
CCGGCGGCTGTCGTACGTCTACTTCCTCGCAATCACTGTGCTTAACCAGCTGCCCCAGGT
CGCTGTCTTCGGCCGCGGTGCGTCCGTGCTACCACTCGCCTTCGTGCTCTTCGTCACTGC
CGTAAAGGACGCCTACGAGGATTTCCGCCGCCACCGTTCCGACCGCCAGGAGAACAACCG
CCTTGCCACCGTGCTCGCACTGGGCACAGCTGGCGAGTTCCAGCCCAAGAGATGGAAGCA
CATACGCGTCGGGGACGTGGTACGGATCGAGTCCAATGAGACACTGCCGGCCGATATGGT
GCTGCTTGCTACCAGCGATCCCACCGGTGTTGCGCACGTCCAGACTGTGAATCTCGATGG
GGAGACCAATCTTAAGACGAGGTATGCCAAGCAGGAGACACATGTCATGTTCTCCCAGAA
TGGTGGTGTTGGTGGCGTCCTGCATTGCGAACGACCCAACAGGAACATTTACGGATTCCA
AGCAAATCTTGAGATTGATGGCAAGCGTGTCTCGCTTGGGCCATCCAACATTGTTCTTCG
TGGCTGTGAACTCAAGAACACCACATGGGCAATAGGGGTTGTGGTATATGCTGGGAAGGA
GACCAAGGTGATGCTAAATAGCTCAGGGGCGCCATCGAAGCGGAGTCGCTTGGAAACACA
GTTGAATCGGGAGACTGTCATATTATCTATTATGCTTATTGGGATGTGCACAACTGCATC
CGTGCTTGCTGGGATTTGGCTGCTGAATCACCGGAGGGAGCTGGAGTTCACCCAATTCTT
CAGGGAGAAGGACTATACAACTGGGAAAAACTACAACTATTATGGTGTTGGGATGCAGAT
ATTCATCACATTCCTTATGGCAGTGATAGTGTATCAGGTTATCATTCCTATCTCATTGTA
TATATCAATGGAGCTGGTAAGGCTTGGACAGGCATATTTCATGGGTGCTGATAAAGATCT
GTATGATGAGTCATCAAGGTCAAAGTTCCAGTGCAGAGCTTTGAATATAAATGAGGATTT
AGGGCAAATAAGGTATGTGTTCTCTGACAAGACTGGGACACTAACGGAGAACAAGATGGT
CTTCCAGTGTGCGTCAATTCGTGGGGTTGATTACAACTCTGGTAAAGATACAGGTGGATA
CTCGGTTGTAGTCGGTGATCATCTGTGGACACCAAAGATGTCAGTTAAAATTGACCCTGA
GCTCGTGAAACTACTCAGGGATGGTGGTTCAAATGAGGAACCAAAGCTTGTTCTTGAATT
CTTACTTGCTCTTGCTTCCTGTAATACCATAGTGCCGCTTGTCCTTGACACTAGAGACTC
AAAACAGAAGTTGATTGACTATCAGGGTGAGTCCCCTGATGAACAGGCACTAGCATATGC
TGCAGCATCTTATGGCATTGTCCTTGTTGAGCGAACATCTGGTTACATAGTGATTGATGT
CCTTGGTGACAGGCAGAGATTTGATATACTGGGACTTCATGAGTTTGATAGTGATCGTAA
GAGAATGTCTGTTATCGTGGGCTGCCCTGATAAGACTGTTAAGCTGTATGTGAAAGGTGC
GGACAGTTCAGTATTTGGAATTACAAACAATTCATCTGAATTGGACATTGTTCGTGCTAC
AGAGGCACATCTCCATAAGTACTCTTCACTTGGACTAAGAACTCTTGTTGTTGGTATGCG
TAAACTGAGTCAATCTGAGTTTGAGGAGTGGCAATTAGCTTATGAGAATGCCAGTACAGC
AGTACTTGGAAGAGGAAACTTACTCCGATCTGTTGCTGCAAACATAGAGATCAATGTCAA
CATATTGGGGGCCACTGGGATTGAAGATAAGCTTCAAGATGGGGTTCCAGAAGCAATAGA
ATCTATTCGGCAAGCAGACATAAAGGTTTGGATTTTAACCGGAGACAAGCAGGAGACCGC
AATTTCTATTGGGTACTCCTGTAAGCTGCTGACCAATGACATGACACAAATCGTTATAAA
TAACAATTCAAAGGAGTCATGTCAGAGAAGTCTTGTGGAGGCGCTTGCTACAACTAAGAA
GCTCAGAGCCGCTTCATCAATTGGTACACAGGGTCCATTGTTAGCATCAGAAACTTCTAA
TGTAACTCTTGCTTTGATTGTAGATGGTAACAGTCTTGTTTACATTCTGGAGACAGATTT
GCAAGACGAGCTTTTCAAACTAGCAACTGAATGTAGTGTTGTCTTATGTTGCCGAGTGGC
TCCATTACAGAAGGCAGGGATAGTTGCCCTTATCAAGAACAGGACAAATGATATGACCTT
AGCAATTGGCGATGGCGCAAATGATGTTTCAATGATTCAAATGGCTGATGTTGGGATTGG
CATCAGTGGCCAAGAAGGTCGACAAGCTGTTATGGCATCAGATTTTTCTATGGGACAATT
TAGATTTTTGGTTCCTCTTTTATTAGTTCATGGTCACTGGAATTATCAAAGGATGGCCTA
TATGATCCTTTACAACTTTTACAAGAATGCTATGTTTGTCTTGGTTCTTTTCTGGTATGT
ACTTTATACAGCATTCACTTTGACAACTGCTATCACTGAGTGGAGTAGTCTCCTGTATAC
TGTCCTGTATACATCCCTTCCAACGATTGTCGTCGGCATTCTTGACAAGGATCTTAATAA
GGCAACCCTGATAGCTTATCCAAAGCTATATGGATCTGGCCAGAGGGACGACAAGTACAA
TGTGAATTTGTTTGTGCTCAATATGCTTGAAGCACTCTGGCAGAGTTTGGTCGTTTTCTA
CTTGCCGTATTTTGCATATAGACGAAGCACAATAGATATGTCTAGTCTTGGAGACTTGTG
GGCACTTGCACCTGTCATTGTTGTAAATATGCAATTGGCCATGGACATTATTAGGTGGAA
CTGGATAATACATGCGTTTGTATGGGGCACAATAGCCGCAACAACAGTTTGTCTCTTTGT
GATAGATTCGATATGGGTTCTTC