Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040416_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:42358263:42375810:-1 gene:Zm00001d040416 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA gyrase subunit B mitochondrial
Sequence

ATGGCGCTACTCCTCCGGCCGATTCCTCCCCCTCCCCGCCTCCGCGCGCTCCTCGGCCGC
CTCCTCTCCACTGGCGCCAGTCTATTTCCCTCCCGCATGCTCCCCGCGCCCCGCTCCACC
GCCGCCGTCCCTCGGCTCCTGTTTGGGCCCAGTGCTGTGGCCGCGGCAGCCACGCGGCGC
AATGGGGTCCGGGTGCGTGCGTTCATGGCGTCAACGACGGCGTCTGAGGCGATGCACGAG
AAGCAGGTGTCCGCGGAGTACACTGCTGCCAATGTCCAGGTCCTAGAAGCATTAGATGGA
GTTCGCACAAGGCCTGGTATGTACATTGGGAGCACAGGACCACGCGGCTTGCATCATCTG
GTTTATGAAATCTTGGATAATGCTGTGGATGAAGCTCAAGCGGGCCATGCTTCGAAGATT
GATGTAGTTCTTCATGATGACAATTCTGTCAGTGTAACAGACAACGGCCGTGGGATTCCT
ACTGATATGCACCCCCAGACGAAGAAATCTTGTGTGGAGACTGTCTTAACATTAATGCAC
GCTGGTGGCAAATTTGGAGGTTCAAAAAGTGGTTACAGTGTCTCTGGAGGGCTTCATGGT
GTTGGCTTATCAGTTGTTAATGCTTTATCAGAGACACTTGAAGTTACTGTTTGGCGTGAT
GGGAAGGAACACAGACAAAGCTATTCGCGGGGGAAACCAACCACTAGGCTAACTAGTAGC
ACACTGACTGGTGAAACAAGCTCTCGTCAAGGGACGCGCATCAGATTTTGGCCTGATAAA
GATATATTTACCACCACGATCGATTTTGACTTCAATACAATCTCCAGTCGCATACGGGAG
CTTGCCTTTCTAAATCCTGAGCTAACAATAATCTTGACAAAGGAAGAAGGGCACACAGTT
CAACGCAACGAATATTGTTATGCTGGTGGCCTTGTTGAATATGTTAAATGGTTGAATACT
GACAAGAAACCCCTGCATGACCCGATTGCGTTCAGAAAGGAGTTGGATGGTATAACAGTG
GATGTCTCCCTTCAATGGTCCTCTGATTCCTACTCTGATACAGTGCTAGGATACGCAAAC
AGTATCCGCACTATTGATGGTGGTACTCATATTGATGGTCTAAAGGCTTCATTGACGAGA
ACCATTAATAACCTTGCAAAGAAGTCGAAGACTATTAAGGATAAGGATATTACCTTGAGT
GGGGAGCATGTAAGAGAAGGAATGACATGCATCATTTCAGTGAAGGTCCCTAGTCCAGAG
TTTGAGGGTCAAACAAAGACAAGGTTGGGAAATCCAGAAGTACGGAGAATAGTTGAGCAG
TCTGTTCAAGAAAACTTAACAGAGTACTTAGAGCTTCATCCAGATGTTCTGGATTCAATC
CTATCAAAGTCCCTTAATGCTCTCAAGGCTGCGTTGGCAGCCAAGCGTGCTAGGGAACTA
GTCAGGACAAAGAGTGTGTTGAAATCTTCATCACTCCCTGGGAAACTTGCTGATTGTGCA
TCAGCTAATCCTGAAGAATCTGAAATCTTTATTGTCGAAGGTGATTCTGCGGGCGGTAGT
GCAAAGCAAGGACGGGATAGAAGATTCCAGGCTATTTTGCCTCTAAGAGGTAAAATTCTC
AACATTGAAAGAAGGGATGAAGCAGCCATGTACAAAAATGAAGAGATCCAAAACCTTATT
CTTGCACTTGGATTAGGAGTGAAGGGTGAGGATTTTAAGAAGGAGGCTCTCCGGTATCAT
AAGATAGTTATACTTACTGACGCTGATGTTGATGGAGCACATATCCGGACTCTCCTCCTT
ACTTTCTTCTTCAGATATCAAAGAGCATTATTTGATGAAGGTTGCATCTACGTTGGTGTA
CCTCCTCTTTACAAGGTTGAGCGTGGAAAACTAGCACATTACTGCTATGATGATGCCGAC
CTCAAAGAGATAGTTAACACCTTCCCTGCAAATGCATCATATCATATCCAGAGGTTTAAA
GGTTTGGGTGAGATGATGCCTGCACAATTATGGGAAACAACGATGGATCCTGAGAGGCGG
CTGTTGAAGCAGCTTAGGGTTGAAGATGCTGCCGAGGCCAATGTTGTGTTCTCGTCACTT
ATGGGCACCCGGGTTGAATATAGGAAGGAACTGATCCAGAAAGCTGCTAGCATGATCAAC
ATAGATCAACTTGACATTTGA

Peptide Sequence

PEP ID

Zm00001d040416_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:42358263:42375810:-1 gene:Zm00001d040416 transcript:Zm00001d040416_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA gyrase subunit B mitochondrial
Sequence

MALLLRPIPPPPRLRALLGRLLSTGASLFPSRMLPAPRSTAAVPRLLFGPSAVAAAATRR
NGVRVRAFMASTTASEAMHEKQVSAEYTAANVQVLEALDGVRTRPGMYIGSTGPRGLHHL
VYEILDNAVDEAQAGHASKIDVVLHDDNSVSVTDNGRGIPTDMHPQTKKSCVETVLTLMH
AGGKFGGSKSGYSVSGGLHGVGLSVVNALSETLEVTVWRDGKEHRQSYSRGKPTTRLTSS
TLTGETSSRQGTRIRFWPDKDIFTTTIDFDFNTISSRIRELAFLNPELTIILTKEEGHTV
QRNEYCYAGGLVEYVKWLNTDKKPLHDPIAFRKELDGITVDVSLQWSSDSYSDTVLGYAN
SIRTIDGGTHIDGLKASLTRTINNLAKKSKTIKDKDITLSGEHVREGMTCIISVKVPSPE
FEGQTKTRLGNPEVRRIVEQSVQENLTEYLELHPDVLDSILSKSLNALKAALAAKRAREL
VRTKSVLKSSSLPGKLADCASANPEESEIFIVEGDSAGGSAKQGRDRRFQAILPLRGKIL
NIERRDEAAMYKNEEIQNLILALGLGVKGEDFKKEALRYHKIVILTDADVDGAHIRTLLL
TFFFRYQRALFDEGCIYVGVPPLYKVERGKLAHYCYDDADLKEIVNTFPANASYHIQRFK
GLGEMMPAQLWETTMDPERRLLKQLRVEDAAEANVVFSSLMGTRVEYRKELIQKAASMIN
IDQLDI

Transcript Sequence

Transcript ID

Zm00001d040416_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:42358263:42375810:-1 gene:Zm00001d040416 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA gyrase subunit B mitochondrial
Sequence

GAGGCGCCATAAACCCTCGGCCTCGACCTCATCCAGTACCCGCACCTCCGCTCAAAACCC
CAGCTCTCCTGCCCCGGCTGGTCTCAGCCACAAGTAGGCGGCCGGCAAGCCAAGACCAAG
GAGCCCGCGAGCGCGAGGGCTCGCCGACGCGGATGGCGCTACTCCTCCGGCCGATTCCTC
CCCCTCCCCGCCTCCGCGCGCTCCTCGGCCGCCTCCTCTCCACTGGCGCCAGTCTATTTC
CCTCCCGCATGCTCCCCGCGCCCCGCTCCACCGCCGCCGTCCCTCGGCTCCTGTTTGGGC
CCAGTGCTGTGGCCGCGGCAGCCACGCGGCGCAATGGGGTCCGGGTGCGTGCGTTCATGG
CGTCAACGACGGCGTCTGAGGCGATGCACGAGAAGCAGGTGTCCGCGGAGTACACTGCTG
CCAATGTCCAGGTCCTAGAAGCATTAGATGGAGTTCGCACAAGGCCTGGTATGTACATTG
GGAGCACAGGACCACGCGGCTTGCATCATCTGGTTTATGAAATCTTGGATAATGCTGTGG
ATGAAGCTCAAGCGGGCCATGCTTCGAAGATTGATGTAGTTCTTCATGATGACAATTCTG
TCAGTGTAACAGACAACGGCCGTGGGATTCCTACTGATATGCACCCCCAGACGAAGAAAT
CTTGTGTGGAGACTGTCTTAACATTAATGCACGCTGGTGGCAAATTTGGAGGTTCAAAAA
GTGGTTACAGTGTCTCTGGAGGGCTTCATGGTGTTGGCTTATCAGTTGTTAATGCTTTAT
CAGAGACACTTGAAGTTACTGTTTGGCGTGATGGGAAGGAACACAGACAAAGCTATTCGC
GGGGGAAACCAACCACTAGGCTAACTAGTAGCACACTGACTGGTGAAACAAGCTCTCGTC
AAGGGACGCGCATCAGATTTTGGCCTGATAAAGATATATTTACCACCACGATCGATTTTG
ACTTCAATACAATCTCCAGTCGCATACGGGAGCTTGCCTTTCTAAATCCTGAGCTAACAA
TAATCTTGACAAAGGAAGAAGGGCACACAGTTCAACGCAACGAATATTGTTATGCTGGTG
GCCTTGTTGAATATGTTAAATGGTTGAATACTGACAAGAAACCCCTGCATGACCCGATTG
CGTTCAGAAAGGAGTTGGATGGTATAACAGTGGATGTCTCCCTTCAATGGTCCTCTGATT
CCTACTCTGATACAGTGCTAGGATACGCAAACAGTATCCGCACTATTGATGGTGGTACTC
ATATTGATGGTCTAAAGGCTTCATTGACGAGAACCATTAATAACCTTGCAAAGAAGTCGA
AGACTATTAAGGATAAGGATATTACCTTGAGTGGGGAGCATGTAAGAGAAGGAATGACAT
GCATCATTTCAGTGAAGGTCCCTAGTCCAGAGTTTGAGGGTCAAACAAAGACAAGGTTGG
GAAATCCAGAAGTACGGAGAATAGTTGAGCAGTCTGTTCAAGAAAACTTAACAGAGTACT
TAGAGCTTCATCCAGATGTTCTGGATTCAATCCTATCAAAGTCCCTTAATGCTCTCAAGG
CTGCGTTGGCAGCCAAGCGTGCTAGGGAACTAGTCAGGACAAAGAGTGTGTTGAAATCTT
CATCACTCCCTGGGAAACTTGCTGATTGTGCATCAGCTAATCCTGAAGAATCTGAAATCT
TTATTGTCGAAGGTGATTCTGCGGGCGGTAGTGCAAAGCAAGGACGGGATAGAAGATTCC
AGGCTATTTTGCCTCTAAGAGGTAAAATTCTCAACATTGAAAGAAGGGATGAAGCAGCCA
TGTACAAAAATGAAGAGATCCAAAACCTTATTCTTGCACTTGGATTAGGAGTGAAGGGTG
AGGATTTTAAGAAGGAGGCTCTCCGGTATCATAAGATAGTTATACTTACTGACGCTGATG
TTGATGGAGCACATATCCGGACTCTCCTCCTTACTTTCTTCTTCAGATATCAAAGAGCAT
TATTTGATGAAGGTTGCATCTACGTTGGTGTACCTCCTCTTTACAAGGTTGAGCGTGGAA
AACTAGCACATTACTGCTATGATGATGCCGACCTCAAAGAGATAGTTAACACCTTCCCTG
CAAATGCATCATATCATATCCAGAGGTTTAAAGGTTTGGGTGAGATGATGCCTGCACAAT
TATGGGAAACAACGATGGATCCTGAGAGGCGGCTGTTGAAGCAGCTTAGGGTTGAAGATG
CTGCCGAGGCCAATGTTGTGTTCTCGTCACTTATGGGCACCCGGGTTGAATATAGGAAGG
AACTGATCCAGAAAGCTGCTAGCATGATCAACATAGATCAACTTGACATTTGAAGGCATT
AAGTAAGGCTGTCCTTTCTGTGTATGATATAGAAGGTCCGCCACCTGCTGCTTTTCTTGC
CACTCCAACAGGATTCTAGCGTTGCAGACTTGATGATACCTTGGCAACATCTTTTTGGTG
CTAGAGTAGCAGAAAACGTAGGGTACAAACATTGGATCCAGGATGAGAGCTGGGTTTCCT
AACGAAAACTCTGATTCATTTGTGGCGGTGCTATAACCATTTCAGCTTGACAGTTCAGAG
CTCACGGGTGTAGTTCCCTGCTGACATCGTTCCTCCGATACGGTGTAATATGCTTTTATA
TCTATCGCCTAATATTTGCTT