Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040344_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:39045836:39049419:1 gene:Zm00001d040344 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBP1-associated protein 2A
Sequence

ATGGGCAAGAAGCGGAAGCTCGAGCCCAAATCGGCGGCAGGGTTCACGCCGGTTAAGGCC
TCCCCGACCACCAGGTCTGCCACCGCTAAGGCCGCTGGTCTATCCGAGGTCCTCGCCCCC
GTCGAGGCTACGATGGAGAAGCTGCCGCAGGGGGCAGGCGGCGAGGATGTAGAGGAAATC
GAGGAGGTGGAGGTCGAGGAGGAAGTGGAAGTGGAAGAGGAAGAAGAAGGCGAGAGCGAC
CAGGCTTCGATCCAGGCGCTGCTGGATTCGTTCCCCAAGGACCAGCTCGTCGAGCTGTTA
CGCGACGCTGCCATCGCTCACGGCGACGTGCTAACCACCATCCGGCGCGTGGCCGACGCC
GACCCGGCTCAGCGGAAGATCTTCGTACACGGCCTCGGCTGGGACACCACAACCGACACC
CTCACCGAGGCCTTCGGCCCATACGGCGAGATAGAGGATCTCAAGGTCGTCACCGACCGC
AACACGGGCAAGTGCAAGGGGTACGGGTTCATCCTCTTCCGTCACCGCTCCGGCGCCCGA
GCTGCACTACGCGAGCCCCAGAAGAAGATTGGTAACCGCAGCACCGCCTGCCAGCTCGCC
TCTGTTGGCCCTGTCCCTGGTGGTGCGCCCAACAGCGCTGCACCAGCCCCGGTTCAATTG
CAGTTGCCACCAGTGTCAGAGTATACACAACGAAAGATATTTGTCAGCAATGTTGGTGCA
GATATCGATCCGCAGAAATTGCTTCAGTTCTTTGCGAGGTTTGGTGAGATCGAGGAAGGC
CCGCTTGGTCTTGACAAGGTCACTGGGAAACCCAAGGGATTTGCTCTTTTTGTCTACAAG
ACCATTGAAAGTGCCAAGAAGGCTCTTGAGGAGCCACATAAGCATTTTGAGGGAGTGATG
CTGCACTGCCAGAAGGCGATTGATGGACCAAAGCCGAACAAATTAGGAGGAGCTGGAGGT
TTTTTCGGTGCTGGAGCTTCAAGTGGGGGCAAGGGGTTTGCTGGTTATGGAGCTACTAGT
CATTCTCTGCCCGGAACTGTTGGTATTGTCCAGCCAATGTCACCTCTGGCACCTGGATTG
GCTTCATTGCCTGGTGGTATTTCTGCTGCCCCAGGTGTGGATCCTGCTCTGGGGCAGGCC
TTGACAGCTTTGCTTGCCACCCAGCAGGGGGGTGGGCTGAGTTTTAATAGCATTCTGGGG
GTCGGTGCTAATGGATCGGGGTTGCCTCCGCAGGGGCCAACTGGTGCATTGGGTGGTAGC
AGCGTGCAGGGGATGCAAGGTGGTTATATGGGTGGCTACGGTGGTTCTGGTGGGTATGGG
GGTGCTTCTTCAGGAGGCCCTGGAAGACATTACATGGGTCATTAG

Peptide Sequence

PEP ID

Zm00001d040344_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:39045836:39049419:1 gene:Zm00001d040344 transcript:Zm00001d040344_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBP1-associated protein 2A
Sequence

MGKKRKLEPKSAAGFTPVKASPTTRSATAKAAGLSEVLAPVEATMEKLPQGAGGEDVEEI
EEVEVEEEVEVEEEEEGESDQASIQALLDSFPKDQLVELLRDAAIAHGDVLTTIRRVADA
DPAQRKIFVHGLGWDTTTDTLTEAFGPYGEIEDLKVVTDRNTGKCKGYGFILFRHRSGAR
AALREPQKKIGNRSTACQLASVGPVPGGAPNSAAPAPVQLQLPPVSEYTQRKIFVSNVGA
DIDPQKLLQFFARFGEIEEGPLGLDKVTGKPKGFALFVYKTIESAKKALEEPHKHFEGVM
LHCQKAIDGPKPNKLGGAGGFFGAGASSGGKGFAGYGATSHSLPGTVGIVQPMSPLAPGL
ASLPGGISAAPGVDPALGQALTALLATQQGGGLSFNSILGVGANGSGLPPQGPTGALGGS
SVQGMQGGYMGGYGGSGGYGGASSGGPGRHYMGH

Transcript Sequence

Transcript ID

Zm00001d040344_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:39045836:39049419:1 gene:Zm00001d040344 gene_biotype:protein_coding transcript_biotype:protein_coding description:UBP1-associated protein 2A
Sequence

CACATGATGCACAGACAGCCCGTCCGACGCCGCGTTAGCTACTTGCCTACTTCAGCTATA
TGAAACGGCAAAAGTCTTCCCCTCGTTCCCCAATCTCCTCTCCATCGAAACCCTAGCACG
ACGCAATTCCCGTCTTCCCACGCCGTATCGCCGTTGCTATGGGCAAGAAGCGGAAGCTCG
AGCCCAAATCGGCGGCAGGGTTCACGCCGGTTAAGGCCTCCCCGACCACCAGGTCTGCCA
CCGCTAAGGCCGCTGGTCTATCCGAGGTCCTCGCCCCCGTCGAGGCTACGATGGAGAAGC
TGCCGCAGGGGGCAGGCGGCGAGGATGTAGAGGAAATCGAGGAGGTGGAGGTCGAGGAGG
AAGTGGAAGTGGAAGAGGAAGAAGAAGGCGAGAGCGACCAGGCTTCGATCCAGGCGCTGC
TGGATTCGTTCCCCAAGGACCAGCTCGTCGAGCTGTTACGCGACGCTGCCATCGCTCACG
GCGACGTGCTAACCACCATCCGGCGCGTGGCCGACGCCGACCCGGCTCAGCGGAAGATCT
TCGTACACGGCCTCGGCTGGGACACCACAACCGACACCCTCACCGAGGCCTTCGGCCCAT
ACGGCGAGATAGAGGATCTCAAGGTCGTCACCGACCGCAACACGGGCAAGTGCAAGGGGT
ACGGGTTCATCCTCTTCCGTCACCGCTCCGGCGCCCGAGCTGCACTACGCGAGCCCCAGA
AGAAGATTGGTAACCGCAGCACCGCCTGCCAGCTCGCCTCTGTTGGCCCTGTCCCTGGTG
GTGCGCCCAACAGCGCTGCACCAGCCCCGGTTCAATTGCAGTTGCCACCAGTGTCAGAGT
ATACACAACGAAAGATATTTGTCAGCAATGTTGGTGCAGATATCGATCCGCAGAAATTGC
TTCAGTTCTTTGCGAGGTTTGGTGAGATCGAGGAAGGCCCGCTTGGTCTTGACAAGGTCA
CTGGGAAACCCAAGGGATTTGCTCTTTTTGTCTACAAGACCATTGAAAGTGCCAAGAAGG
CTCTTGAGGAGCCACATAAGCATTTTGAGGGAGTGATGCTGCACTGCCAGAAGGCGATTG
ATGGACCAAAGCCGAACAAATTAGGAGGAGCTGGAGGTTTTTTCGGTGCTGGAGCTTCAA
GTGGGGGCAAGGGGTTTGCTGGTTATGGAGCTACTAGTCATTCTCTGCCCGGAACTGTTG
GTATTGTCCAGCCAATGTCACCTCTGGCACCTGGATTGGCTTCATTGCCTGGTGGTATTT
CTGCTGCCCCAGGTGTGGATCCTGCTCTGGGGCAGGCCTTGACAGCTTTGCTTGCCACCC
AGCAGGGGGGTGGGCTGAGTTTTAATAGCATTCTGGGGGTCGGTGCTAATGGATCGGGGT
TGCCTCCGCAGGGGCCAACTGGTGCATTGGGTGGTAGCAGCGTGCAGGGGATGCAAGGTG
GTTATATGGGTGGCTACGGTGGTTCTGGTGGGTATGGGGGTGCTTCTTCAGGAGGCCCTG
GAAGACATTACATGGGTCATTAGGATGATTATAACTATTTTACTGTGGCCAGAATGCCAG
ATGATTCTACATGTTCCTGCTTGGCACTTATAAACTTGCTGTTTTAAGCTGTTTCTGGCT
ACTCAATTATGGCTGTGGTCAAAGTTTTCATAGGAACTTTGGTTCCCTCCACCTATCATT
TCAAAACGAAATTACCGTTTAGATTTTCAAAAGGGCATCTTATGGCTGCAAGACTATTGT
AGAAGACTTCATGTGGATCTAAAGCATTGTGGTATTTAATGATATTACTGTTTTTGTACG
GTTTTCAAAAGGCCAAATTAAGGCTTGCAAAACTATTGTAAAAGACTTCCTGTGGGTTTA
AAGCACTGAGCTATTTAATCACAACGGTTTTGTTTCATATGTATGGTTTTTAAAGAGGCG
ATTGTGTGGCTTGCAAGGCTGCTGCAAAAGATTGTGGATTTTTACTATGTTTCTGTTTTC
ACTTTTTTTTACAATAAACCTGCTGCTATGTTTAGACATAATTTGTACTCTGCACTGACA
AGTGTCATTTTAGTTGCCATACTTATTTGCAGGCAATGCAGGTCTATTTGTTCAGGAAAT
CAATAGTGCTTTTCAGTATATTTCTAAAGAAAGTTGGATATTTCTTCTATTTATATATAA
AGTAATACTTCCTAGTTTGCAAATAATGTGCTTTATGTTGATAAAATGTTGAAGTTGAGA
ACGTTTGCTACTCCCTCAGCCCCAACAATGTGCTGTTTTAGGTTCGAGATGAGTCCAGTG
TTCTTAAGGCCGCGCATAGGTGAGCAAGCAAACAGGTCAACCGCCTTAGCTCCTAGGTGA
GCAAGGCGGCAAGATTTCTCCGAGCGTCTGGACACGCCTAGGCAACGCCTTAAAAACCCT
GGACGAGTCAAACTTTCTTTAAATATAAGTTTAGTGTGAAAATATATTTCATAACGAGTC
TAATGATATTTATTTGGTATCATAAATGTTTGTAATTTTTCATATAGATTTGTTCGAAAT
TCTTTTTGCGATAGGGGGAGTAGTTCAAGTAAAATATTTGTTTATGGTATATAATGGTAT
TGAAGGAGAG