Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040343_T004
CDS Infomation

cds chromosome:B73_RefGen_v4:3:39042628:39045301:-1 gene:Zm00001d040343 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable splicing factor 3A subunit 1
Sequence

ATGCCCGCCGCCATGGGCACCCCCATCCTGACCCTCCCCGCACCGGATGGCAACGGCACC
GGTGGCGGCGACGCCAACCAGCAGCTGCTGCAGGCGCCGCCAAAGCCTCCCCCTCCCGGC
GCGAAGACGGACCCCCCGGCGACGGCGGAGCTGTACACGGTGCGGCTGCCCGAGGGTATC
ACAGGGGAGGAGCTAGACATCATCAAGCTGACCGCCCAATTTGTGGCGCGGAACGGGAAG
AACTTCCTGACGAGCCTGGCACAGCGCGAGAGCAACAACATGCAGTTCCACTTCATCCGG
CCCACGCACAGCATGTTCCCCTTCTTTACGGAGCTCACAGATGCGTACTCCAGGGTGCTG
AGGCCGGCAGAGGGGGTGCCTGCACTGCTAAAAGAGCTGAGGGAGGGGTCAAAGGACCTG
ACTACAGTGTTGGAGAGATGCTTGAACCGGTTGGAGTGGGATCGGTCGCAGGAGCAGGCA
AGGCAGCAGGCAGAGGATGAGGTTGAGCAGGAACGGATGCAAATGTCAATGATTGATTGG
CATGATTTTGTTGTTGTGGAGACCATTGAATTTGCAGATGATGAGTATGAAGGGCTTCCT
GTGCCACTTACATTGGAGGAATTGAAGCGTCAGAAGAGGATGGAGAACTTGGGAGAGGAG
GAAGCCATGGATTTGACTGAACCTGCTAAGGAGGTTGAGATGGAGATGGATGAAGAGGAG
ATGCAACTTGTTGAAGAAGGAATGCGGGCAGCACAGCTTGAGGAGAATGATGGAGGATCA
CAAGTTAATGTTGCTGGTGATGACGAGACACCTATGAGGATTGTCAAGAACTACAAGAGG
CCTGAGGAGAGGATTCCTGCCGAGAGAGACCCAACTAAGTTTGTTGTCTCACCGATAACT
GGAGAGCTCATTCCCATCAGCGAGATGGAGGAACACATGCGCATCTCACTCATTGATCCC
AAGTACAAGGAGCAGAAAGAGAGGATGTTGGCTAAGATCAAGGAAACTACCCTTGCACCT
GATGATGAAATTTCACGGAACATTGTTGGTCTTGCTCGCACTCGCCCTGATATTTTTGGG
ACTACTGAGGAGGAGGTGTCTAACGCCGTCAAGGCAGAAATTGAGAAGAAAAAAGATGAG
CAGCCAAAGCAGGTTATTTGGGATGGTCATTCTGGTAGCATTGGTCGCACTGCTACTCAT
GCATTATCTCAGATTCAGGGTGGTGAGGAACAGTTTGATGCTTCCAATGTTGATGGGAGA
CCTGTTCCTGGTCCAGCTCCACTTGTCCGACCTGGCATGCCGCTGCCCCGACCTCCTCAG
CCACTTCCTCTTGTTAATGTTCCTCGTTTTATTGCTCCACCAGCACCATACTCTGTTCCA
CCCCCAGGTTCTCATATGCCTGGAGTTCCACAGATGATGCCTCACATGCATCTGCACCCA
CAGCAGATACCTGGGCAACCGCCGATGGTTAGGATGCCAGGTCAAATGGTTCATATGCCA
ACCAGCATTCCTCCGCCTCCTGGCCAAACTCAGTTTATGCCTGGTCCACCACCACACACA
TTTGCTATGCCCCCATCATCGCACATGCCACACATGATCAATCCCATTGGAATCCCTCAG
CCTCCAGCACCCCCACTGCCTCCGCAACCTCCTGCTGAAGAGCAACCGCCTCCACCCGAT
GAACCCGAACCTAAGAGGCAGAGAACAGACGATGGTTCTCTTATCCCAGCTGAGCAGTTC
CTTGCTCAGCATCAGGGTCCTGCTAGCATCTCTGTATCTGTACCCAACCTCGATGAAGGG
AACTTGCGAGGCCAAGTTTTGCAGATTCCTGTTCAATCACTGTCAGACACAGTTGGTAGT
CTGAAGGAGCAGATTGCTGGAGAGTTACAGCTCCCTGCTAATAAGCAGAAGCTGAGTGTG
AGGACTAGTTTCCTCAAAGACAACCTTACTCTTGCTTACTACAATGTGGGTCCTGGAGTG
GTGATCAATCTAACACTAAGGGAGCGTGGTGGGAGAAAGAAATGA

Peptide Sequence

PEP ID

Zm00001d040343_P004
PEP Infomation

pep chromosome:B73_RefGen_v4:3:39042628:39045301:-1 gene:Zm00001d040343 transcript:Zm00001d040343_T004 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable splicing factor 3A subunit 1
Sequence

MPAAMGTPILTLPAPDGNGTGGGDANQQLLQAPPKPPPPGAKTDPPATAELYTVRLPEGI
TGEELDIIKLTAQFVARNGKNFLTSLAQRESNNMQFHFIRPTHSMFPFFTELTDAYSRVL
RPAEGVPALLKELREGSKDLTTVLERCLNRLEWDRSQEQARQQAEDEVEQERMQMSMIDW
HDFVVVETIEFADDEYEGLPVPLTLEELKRQKRMENLGEEEAMDLTEPAKEVEMEMDEEE
MQLVEEGMRAAQLEENDGGSQVNVAGDDETPMRIVKNYKRPEERIPAERDPTKFVVSPIT
GELIPISEMEEHMRISLIDPKYKEQKERMLAKIKETTLAPDDEISRNIVGLARTRPDIFG
TTEEEVSNAVKAEIEKKKDEQPKQVIWDGHSGSIGRTATHALSQIQGGEEQFDASNVDGR
PVPGPAPLVRPGMPLPRPPQPLPLVNVPRFIAPPAPYSVPPPGSHMPGVPQMMPHMHLHP
QQIPGQPPMVRMPGQMVHMPTSIPPPPGQTQFMPGPPPHTFAMPPSSHMPHMINPIGIPQ
PPAPPLPPQPPAEEQPPPPDEPEPKRQRTDDGSLIPAEQFLAQHQGPASISVSVPNLDEG
NLRGQVLQIPVQSLSDTVGSLKEQIAGELQLPANKQKLSVRTSFLKDNLTLAYYNVGPGV
VINLTLRERGGRKK

Transcript Sequence

Transcript ID

Zm00001d040343_T004
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:39042628:39045301:-1 gene:Zm00001d040343 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable splicing factor 3A subunit 1
Sequence

GGAGTGACGGGGTCTGTCGTGTCTCGACCCGACCTCCCTCCCTCCCTCCTTCCGTTCCGA
TCTAAACCCGCCGAAACCCTAATCCTCATGCCCGCCGCCATGGGCACCCCCATCCTGACC
CTCCCCGCACCGGATGGCAACGGCACCGGTGGCGGCGACGCCAACCAGCAGCTGCTGCAG
GCGCCGCCAAAGCCTCCCCCTCCCGGCGCGAAGACGGACCCCCCGGCGACGGCGGAGCTG
TACACGGTGCGGCTGCCCGAGGGTATCACAGGGGAGGAGCTAGACATCATCAAGCTGACC
GCCCAATTTGTGGCGCGGAACGGGAAGAACTTCCTGACGAGCCTGGCACAGCGCGAGAGC
AACAACATGCAGTTCCACTTCATCCGGCCCACGCACAGCATGTTCCCCTTCTTTACGGAG
CTCACAGATGCGTACTCCAGGGTGCTGAGGCCGGCAGAGGGGGTGCCTGCACTGCTAAAA
GAGCTGAGGGAGGGGTCAAAGGACCTGACTACAGTGTTGGAGAGATGCTTGAACCGGTTG
GAGTGGGATCGGTCGCAGGAGCAGGCAAGGCAGCAGGCAGAGGATGAGGTTGAGCAGGAA
CGGATGCAAATGTCAATGATTGATTGGCATGATTTTGTTGTTGTGGAGACCATTGAATTT
GCAGATGATGAGTATGAAGGGCTTCCTGTGCCACTTACATTGGAGGAATTGAAGCGTCAG
AAGAGGATGGAGAACTTGGGAGAGGAGGAAGCCATGGATTTGACTGAACCTGCTAAGGAG
GTTGAGATGGAGATGGATGAAGAGGAGATGCAACTTGTTGAAGAAGGAATGCGGGCAGCA
CAGCTTGAGGAGAATGATGGAGGATCACAAGTTAATGTTGCTGGTGATGACGAGACACCT
ATGAGGATTGTCAAGAACTACAAGAGGCCTGAGGAGAGGATTCCTGCCGAGAGAGACCCA
ACTAAGTTTGTTGTCTCACCGATAACTGGAGAGCTCATTCCCATCAGCGAGATGGAGGAA
CACATGCGCATCTCACTCATTGATCCCAAGTACAAGGAGCAGAAAGAGAGGATGTTGGCT
AAGATCAAGGAAACTACCCTTGCACCTGATGATGAAATTTCACGGAACATTGTTGGTCTT
GCTCGCACTCGCCCTGATATTTTTGGGACTACTGAGGAGGAGGTGTCTAACGCCGTCAAG
GCAGAAATTGAGAAGAAAAAAGATGAGCAGCCAAAGCAGGTTATTTGGGATGGTCATTCT
GGTAGCATTGGTCGCACTGCTACTCATGCATTATCTCAGATTCAGGGTGGTGAGGAACAG
TTTGATGCTTCCAATGTTGATGGGAGACCTGTTCCTGGTCCAGCTCCACTTGTCCGACCT
GGCATGCCGCTGCCCCGACCTCCTCAGCCACTTCCTCTTGTTAATGTTCCTCGTTTTATT
GCTCCACCAGCACCATACTCTGTTCCACCCCCAGGTTCTCATATGCCTGGAGTTCCACAG
ATGATGCCTCACATGCATCTGCACCCACAGCAGATACCTGGGCAACCGCCGATGGTTAGG
ATGCCAGGTCAAATGGTTCATATGCCAACCAGCATTCCTCCGCCTCCTGGCCAAACTCAG
TTTATGCCTGGTCCACCACCACACACATTTGCTATGCCCCCATCATCGCACATGCCACAC
ATGATCAATCCCATTGGAATCCCTCAGCCTCCAGCACCCCCACTGCCTCCGCAACCTCCT
GCTGAAGAGCAACCGCCTCCACCCGATGAACCCGAACCTAAGAGGCAGAGAACAGACGAT
GGTTCTCTTATCCCAGCTGAGCAGTTCCTTGCTCAGCATCAGGGTCCTGCTAGCATCTCT
GTATCTGTACCCAACCTCGATGAAGGGAACTTGCGAGGCCAAGTTTTGCAGATTCCTGTT
CAATCACTGTCAGACACAGTTGGTAGTCTGAAGGAGCAGATTGCTGGAGAGTTACAGCTC
CCTGCTAATAAGCAGAAGCTGAGTGTGAGGACTAGTTTCCTCAAAGACAACCTTACTCTT
GCTTACTACAATGTGGGTCCTGGAGTGGTGATCAATCTAACACTAAGGGAGCGTGGTGGG
AGAAAGAAATGAGTCTTTTGGTTCTCAGTGTAATGGCAGGTTAATGATTACAACTATACA
TCAGCAGCTATCATGGAGAACCTTTGTGCT