Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040147_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:29191597:29194489:-1 gene:Zm00001d040147 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGACGACGCTGTCGTCCGGCGTCCTCCTGAAGCTCCTGGACGGCATGAAGAGCGGCGCC
GCCAAGCCCGTGGGCGAGCACCGGACGGCGGTCCTGCAGGTGACGGACATCGTGCCAGCG
GAGCTGGACGAGAAGGACCTCTTCCCCAAGCACGGCAAGTTCTACGTCAAGGTCTCCGAT
GCGTCGCACTCCATCTACGCCACGCTCCCGCTGGCGCAGGCAGACCTCGTGCTCTCCAAC
AAGCTCCACCTCGGCCAGTTCGTCCACGTGGACCGCCTTGACCCGGCCTCCCCCGTCCCC
GTCATCGTTGGCGCCAGGCCGCTCCCTGGCCGCCACCCGCTCGTCGTCGGCACGCCCGAC
CCGGCAGCTAGGGCCAAGCCCGCCGCGCCGCGCAGGGGGTCCTGGGGCCCCGAGCAGAAT
GCCGCCATCAAGCCTACCACGCTCAACTTCGACGCCGAGAGGATGACGCCAGTCAAGGAG
CGGCCGGCCTTGTCGACTCCGGTCAAGGACCGCGCTGGTGGCGCGACGCCTGCCAGGGAG
CGCGGGGCTGCGGCGACGCCTGGTAGGGAGCGGACCGCCGTGGCGTCGCCGGCGCTGAGC
TCTGCGTCGTTGAGGAAGAGCAGCAGCGTGCTGCCCAGGCTGACCAGGAGCAAGAGCTTT
GTCGCGGACAGGGATCAGCAGCATCCTAGGATCCCCAAGAGCCCATTCCCCACTGAGAAG
AGCTCGGTGAGCTGCACAGCCTCGAGGGCGACGAGGAGGGTGGCCAAGGAGGAAGAGCCC
TCCTCGCCTCCTTCTGATGATGAGCTCGGAAGCTCGGCCACATCCACCAAGAAGCGATCG
GCGACAGCTGCTCGCGTGCCGGTGCCGGGGAAGCTCAGTCTACTCGGGAAGGACGCAATG
GAGCAGAGAGAGCAGGCGCAGAAGGTTGCCCTGGAGGCACTGCGCAACGCATCAGCCACG
GACAACGTGGCTAGGATCTACAAGTTGTTCTCGGAAGTGAGCAAGACGGCGAGGCCGGAA
GCGCCGGCCACCTGTTTTGACAGCTTCCTCAGCTTTCACCAAGAGGCCGTGCAGGCCGTC
ACCGACATTGAGGCGATCCAGGCGGCCACCTCGATGGCCGCGGCCGTGGCGAGTGACGAG
CAGCAGCTCGAAGATGCGCCGCCGGTCCTGCAGGAGATAGCACAGAACAGGACGGTGGTG
CGTCGGAGAGGCATCGGCTTGGGGAGCGTGTCCAAGTCAGTGTCGTTCGCGCCCGGCACG
TTGGACCCGAAGCAGGACGATGGAGGCGGCAAGGCCATCCGGAGCTCGAGTGCCAGCAGG
AAGTGCCTCGCCACGGACAAGATCGGCGAAGACGGTGGCGACGAGAAGAGATCATCTTCT
TCTGGTCCTTCCTCTGCCACCACCACCACTGCGCACTCTGCTCTGGGCTCCTCGCTGAAG
CTGGCTAAGAAGATACAGGCCGAAGCAGGGAGCTGGTTCATGGACTTCTTGGAGGCCGCG
CTGGAGACCGGGCTGAAGAAGAGCAAGGCGTCTTCCATGGGGGACGGGCGGAAGCAAAGC
AGCTGCTGTTGCCCGCAGTCGTTGATGCTGCGGGTGATCAACTGGGTGGAGATGGAGCAG
AGCAGCGGCGACAGCAGCGGCAGGAAGACTGCCCACCCAAGAGCTGCGGCCGTTGCGCGG
AAGCTCAGAATCAAGGCCAAAAACCCCTCCTGA

Peptide Sequence

PEP ID

Zm00001d040147_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:29191597:29194489:-1 gene:Zm00001d040147 transcript:Zm00001d040147_T003 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MTTLSSGVLLKLLDGMKSGAAKPVGEHRTAVLQVTDIVPAELDEKDLFPKHGKFYVKVSD
ASHSIYATLPLAQADLVLSNKLHLGQFVHVDRLDPASPVPVIVGARPLPGRHPLVVGTPD
PAARAKPAAPRRGSWGPEQNAAIKPTTLNFDAERMTPVKERPALSTPVKDRAGGATPARE
RGAAATPGRERTAVASPALSSASLRKSSSVLPRLTRSKSFVADRDQQHPRIPKSPFPTEK
SSVSCTASRATRRVAKEEEPSSPPSDDELGSSATSTKKRSATAARVPVPGKLSLLGKDAM
EQREQAQKVALEALRNASATDNVARIYKLFSEVSKTARPEAPATCFDSFLSFHQEAVQAV
TDIEAIQAATSMAAAVASDEQQLEDAPPVLQEIAQNRTVVRRRGIGLGSVSKSVSFAPGT
LDPKQDDGGGKAIRSSSASRKCLATDKIGEDGGDEKRSSSSGPSSATTTTAHSALGSSLK
LAKKIQAEAGSWFMDFLEAALETGLKKSKASSMGDGRKQSSCCCPQSLMLRVINWVEMEQ
SSGDSSGRKTAHPRAAAVARKLRIKAKNPS

Transcript Sequence

Transcript ID

Zm00001d040147_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:29191597:29194489:-1 gene:Zm00001d040147 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCCTCGCGCTCCTCCCTTCCTCGTAGGTTACCGTTGGTGCGAGTGCAACGCAACCCCACC
CCAGCTGCTAAACCCGAGACCGAACCTCGTATCGTCCAGCTTAACCGCACCCACCTTTCG
CGACTGGGATTTTTCTCGAGATCGATCGATCGCTTTCCATCAGAGAGCAGCATCACCTTC
TTGCCTTGCCCACGCCCCAGGTTGCGAATCGAAGCGTAAACATGACGACGCTGTCGTCCG
GCGTCCTCCTGAAGCTCCTGGACGGCATGAAGAGCGGCGCCGCCAAGCCCGTGGGCGAGC
ACCGGACGGCGGTCCTGCAGGTGACGGACATCGTGCCAGCGGAGCTGGACGAGAAGGACC
TCTTCCCCAAGCACGGCAAGTTCTACGTCAAGGTCTCCGATGCGTCGCACTCCATCTACG
CCACGCTCCCGCTGGCGCAGGCAGACCTCGTGCTCTCCAACAAGCTCCACCTCGGCCAGT
TCGTCCACGTGGACCGCCTTGACCCGGCCTCCCCCGTCCCCGTCATCGTTGGCGCCAGGC
CGCTCCCTGGCCGCCACCCGCTCGTCGTCGGCACGCCCGACCCGGCAGCTAGGGCCAAGC
CCGCCGCGCCGCGCAGGGGGTCCTGGGGCCCCGAGCAGAATGCCGCCATCAAGCCTACCA
CGCTCAACTTCGACGCCGAGAGGATGACGCCAGTCAAGGAGCGGCCGGCCTTGTCGACTC
CGGTCAAGGACCGCGCTGGTGGCGCGACGCCTGCCAGGGAGCGCGGGGCTGCGGCGACGC
CTGGTAGGGAGCGGACCGCCGTGGCGTCGCCGGCGCTGAGCTCTGCGTCGTTGAGGAAGA
GCAGCAGCGTGCTGCCCAGGCTGACCAGGAGCAAGAGCTTTGTCGCGGACAGGGATCAGC
AGCATCCTAGGATCCCCAAGAGCCCATTCCCCACTGAGAAGAGCTCGGTGAGCTGCACAG
CCTCGAGGGCGACGAGGAGGGTGGCCAAGGAGGAAGAGCCCTCCTCGCCTCCTTCTGATG
ATGAGCTCGGAAGCTCGGCCACATCCACCAAGAAGCGATCGGCGACAGCTGCTCGCGTGC
CGGTGCCGGGGAAGCTCAGTCTACTCGGGAAGGACGCAATGGAGCAGAGAGAGCAGGCGC
AGAAGGTTGCCCTGGAGGCACTGCGCAACGCATCAGCCACGGACAACGTGGCTAGGATCT
ACAAGTTGTTCTCGGAAGTGAGCAAGACGGCGAGGCCGGAAGCGCCGGCCACCTGTTTTG
ACAGCTTCCTCAGCTTTCACCAAGAGGCCGTGCAGGCCGTCACCGACATTGAGGCGATCC
AGGCGGCCACCTCGATGGCCGCGGCCGTGGCGAGTGACGAGCAGCAGCTCGAAGATGCGC
CGCCGGTCCTGCAGGAGATAGCACAGAACAGGACGGTGGTGCGTCGGAGAGGCATCGGCT
TGGGGAGCGTGTCCAAGTCAGTGTCGTTCGCGCCCGGCACGTTGGACCCGAAGCAGGACG
ATGGAGGCGGCAAGGCCATCCGGAGCTCGAGTGCCAGCAGGAAGTGCCTCGCCACGGACA
AGATCGGCGAAGACGGTGGCGACGAGAAGAGATCATCTTCTTCTGGTCCTTCCTCTGCCA
CCACCACCACTGCGCACTCTGCTCTGGGCTCCTCGCTGAAGCTGGCTAAGAAGATACAGG
CCGAAGCAGGGAGCTGGTTCATGGACTTCTTGGAGGCCGCGCTGGAGACCGGGCTGAAGA
AGAGCAAGGCGTCTTCCATGGGGGACGGGCGGAAGCAAAGCAGCTGCTGTTGCCCGCAGT
CGTTGATGCTGCGGGTGATCAACTGGGTGGAGATGGAGCAGAGCAGCGGCGACAGCAGCG
GCAGGAAGACTGCCCACCCAAGAGCTGCGGCCGTTGCGCGGAAGCTCAGAATCAAGGCCA
AAAACCCCTCCTGATGCGCTGCTGCCCTCTGATTCTTGTGAGAAGCTAGTTTGTCTCTGA
TTCTTGTGAGAATGTACCCAGATAGAATCCGTAGAATAAGAAAGTGATTGCCTCCATTGT
TCTTGTCACGGCATAGCAGATTGTTTCAAGTGTTCTTGAAGTAGGATGACCTGTTCCCTT
ATCACTAATCTTAAACAGCACTACAGCAGCAGAACAATGGAGGTGTTGTACCGTAGTTAC
TGTTG