Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040142_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:3:29090403:29096140:1 gene:Zm00001d040142 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

ATGCAGATTCCTGCTAGCGACAAAGTATACGAGTATATCCTCTTTCGGGGAACTGATATC
AAGGATTTGCAAGTTAAGTCATCACCACCGCCGCCGCCACCTCAAGCAGCTTCCCTGCAC
AATGACCCTGCCATAATCCAGTCACATTATTCTCAACCAGCATCAACATCGTCAAATTTG
CCTTCCGCTGGGGGTGCAGTTTTACCAGACCTCAGCTCCCAGGCAGTTCAATATGGGCTT
CAGAGGCCAACTTTTCAGAGTAACCTTCCTCTATACCAACCAGGGAATGCTCCACGGGGC
TCTTCAGCGGCACCTCCAGCAGGAAATGCTCCGTGGGGCTCTTCAGCAGAACCTCCAGCA
GGAACGACACTTTCGGTTCCCTCAATGTACTGGCATGGATACTATGCGCCTTCAAGTGGG
CTGCCACCTCATTTGCAGCAACCTCTGCTGCTTCAGCCAACACCAGGATTGTCAGTTCCC
CAGAATCTTCAATATCCAGGACTAAATCCTTCTTTGCCATCTGGGATGCAAAAGCTGTCA
GAACTCCAACCTTCATTGATGCCACCTATTAATAGTCAAGGTTCTTCAGGTATCCTGCCT
ACTACAACAGCTCCTGCTTCTGCTACCTTATTAGCTCCAGAAAGCTCAAAGCCTCAGGTG
CCAAACATGGGATCTTTGTTTACTCCTGCAACATCTCTTGGTGCAACTTTTCCTTATCCA
AGCCAGCCAACACCGGTGGCTGAAACTAGTGCAACAGTGTCACAGAACATAACTTCATTT
AGTAGCAACAAGGCTACTGCTCTTCCAGGCTCAACACTGTCATACCAAACTGCATCTCAG
TCTGTTTCTTCGACTATTGCCCCATCTAGCTCAGCACAAGTGGAGATGGCTGTGCCTTTG
TTGGCATCATCAGGTCAACTATTGCAGAACACATCATCCATGCTTTCATCATCACACTCG
ATGCAGGCACCATTACAGGTAGCTAGCAAAGAAGTCAAGCCGGTTGAGCCAAAGGCTAAG
GTTGCAGAACCATTACTGCCTGACCCTTTGCTACCAGACCCACCATCACAGTCTCTGCCT
GAAAATAAGGAGCCTATATTGCCATTGCCCAAACAGACACCTCAGAAGTACAATGGATCT
GGTTTGCACAACCATCACAACTTTAGGGGCCGTGGAAGGGGTAGAGGGAGTGCGGTATGC
TGA

Peptide Sequence

PEP ID

Zm00001d040142_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:3:29090403:29096140:1 gene:Zm00001d040142 transcript:Zm00001d040142_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

MQIPASDKVYEYILFRGTDIKDLQVKSSPPPPPPQAASLHNDPAIIQSHYSQPASTSSNL
PSAGGAVLPDLSSQAVQYGLQRPTFQSNLPLYQPGNAPRGSSAAPPAGNAPWGSSAEPPA
GTTLSVPSMYWHGYYAPSSGLPPHLQQPLLLQPTPGLSVPQNLQYPGLNPSLPSGMQKLS
ELQPSLMPPINSQGSSGILPTTTAPASATLLAPESSKPQVPNMGSLFTPATSLGATFPYP
SQPTPVAETSATVSQNITSFSSNKATALPGSTLSYQTASQSVSSTIAPSSSAQVEMAVPL
LASSGQLLQNTSSMLSSSHSMQAPLQVASKEVKPVEPKAKVAEPLLPDPLLPDPPSQSLP
ENKEPILPLPKQTPQKYNGSGLHNHHNFRGRGRGRGSAVC

Transcript Sequence

Transcript ID

Zm00001d040142_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:29090403:29096140:1 gene:Zm00001d040142 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein decapping 5
Sequence

CGAAGAGCGAGATCAGGTACGAGGGCGTCCTTTACAAAATCAACACCGAGGAGTCCAGCA
TCGGCCTGCGCAATGGTAACTGCTTTCTCTTCTCTAGCGCACTCGCTCCGCATCCGCTGC
TGTCATTTTCCTCAGATGCGAATGTTCCAGACCTAGATTTGCTGGTCCCTGGTGCGCTCA
GCGAGGCGAATCCTTGTCCCCCTAGCCCCCCCCCCTACCAATGTCAGGGTCTCAGGGATT
GAGGGGAATTCGAAATTTTCCAATGTATGGTAGAACTATGTTTACCCACCCCACTTGCTC
CTCGACTCGATTTGTCACCAGTTATTGTTCCGCCTGCTATGTCCTCTCATGTCTGAATCA
TTTAAACTTCAGTTTTCAAACTGAGACGTGCACGCCTTAGGTCTTAGCTATTGCTTTACT
TCAGATGCCACTGTTATGATGTACACTTGTCAATTCATTGTTTTGTAGTGCGGTCCTTTG
GGACCGAAGGTCGGAAGAAAGATGGAATGCAGATTCCTGCTAGCGACAAAGTATACGAGT
ATATCCTCTTTCGGGGAACTGATATCAAGGATTTGCAAGTTAAGTCATCACCACCGCCGC
CGCCACCTCAAGCAGCTTCCCTGCACAATGACCCTGCCATAATCCAGTCACATTATTCTC
AACCAGCATCAACATCGTCAAATTTGCCTTCCGCTGGGGGTGCAGTTTTACCAGACCTCA
GCTCCCAGGCAGTTCAATATGGGCTTCAGAGGCCAACTTTTCAGAGTAACCTTCCTCTAT
ACCAACCAGGGAATGCTCCACGGGGCTCTTCAGCGGCACCTCCAGCAGGAAATGCTCCGT
GGGGCTCTTCAGCAGAACCTCCAGCAGGAACGACACTTTCGGTTCCCTCAATGTACTGGC
ATGGATACTATGCGCCTTCAAGTGGGCTGCCACCTCATTTGCAGCAACCTCTGCTGCTTC
AGCCAACACCAGGATTGTCAGTTCCCCAGAATCTTCAATATCCAGGACTAAATCCTTCTT
TGCCATCTGGGATGCAAAAGCTGTCAGAACTCCAACCTTCATTGATGCCACCTATTAATA
GTCAAGGTTCTTCAGGTATCCTGCCTACTACAACAGCTCCTGCTTCTGCTACCTTATTAG
CTCCAGAAAGCTCAAAGCCTCAGGTGCCAAACATGGGATCTTTGTTTACTCCTGCAACAT
CTCTTGGTGCAACTTTTCCTTATCCAAGCCAGCCAACACCGGTGGCTGAAACTAGTGCAA
CAGTGTCACAGAACATAACTTCATTTAGTAGCAACAAGGCTACTGCTCTTCCAGGCTCAA
CACTGTCATACCAAACTGCATCTCAGTCTGTTTCTTCGACTATTGCCCCATCTAGCTCAG
CACAAGTGGAGATGGCTGTGCCTTTGTTGGCATCATCAGGTCAACTATTGCAGAACACAT
CATCCATGCTTTCATCATCACACTCGATGCAGGCACCATTACAGGTAGCTAGCAAAGAAG
TCAAGCCGGTTGAGCCAAAGGCTAAGGTTGCAGAACCATTACTGCCTGACCCTTTGCTAC
CAGACCCACCATCACAGTCTCTGCCTGAAAATAAGGAGCCTATATTGCCATTGCCCAAAC
AGACACCTCAGAAGTACAATGGATCTGGTTTGCACAACCATCACAACTTTAGGGGCCGTG
GAAGGGGTAGAGGGAGTGCGGTATGCTGATACAATCCATTTTTTATTTGTTTTGATCATA
TTTAATGACAAGGGATGCTAATTTAACCCTCGTCTCATGGTTCATGTCCTTACATTTTGC
TCTTCACTACTTGTCTGAATAGTGTGGTGAGAGCTGTCTCACCGAGTCACCAGGCTTGGC
GCAGTGGTGAGAGCTGTCTCACTGAGCAACCAAGTCGCGAATTTGAAGCAGATTCTCTGT
GGCTTGTCTTGGTTTATCTCTTCCCTAGACCCCCACATGAGCCTTCGGCACTGGCTTGCC
CTATTTGTCTAAATGGAATCATTCTATGTTTTTTTAAGAAGAGATAATATTCAGATCATC
TATGCATATTTATTTTGTTTTTGTCAACTCTAAAGCATGAAATTTGACAAATCTGCCAAC
TATAATCATATTTTGATTTGATAATAGTAATTTGTTAACTACTTAAAGGGCGTACCCAGT
GCCGTAGGCTTCCCGCACTGTGCGGGGTCTGGGGAAGGGTATCTTTAAGCGCCAAGCCTT
ACCCGCATAATATGCAGAGGCTAGGGCTCGAACCCGGGACCTTCCGGTTACAGACGGTAG
GCTCTACCGCTGCACCAGGCCCGCCCTTCAATTTGTTAACTACTTAATGTGTATAATTTA
GCTGTGTCAGCCATGTGTACCAACAGAAAAGCATATGTACAATAGCATTTTGAAGTGGTT
TCATGGTTCACCTTATTAGTTTGCTAGTGAGTTCGCACATTCACAAATCGCAATGTACAA
TGCACATGAAATGTCTTTTGGGCAAAGCTATTGTGAAATTGCTTGGTAAGTGAGCAACAC
TGTAAACAATGTGAGTTGGAAAATGACAGTATGACACCTTTGACTCGTGATAAGTGGCAC
ACTGACCCCATCAGTGTGTACTGCATGTGTGCTTTGGGTGTGCTCTTATTTCATAGATCA
CTGTAGCATATAGTAGGAAGGCTCTCGCTTTGACTGCGGACAAATTTCTGGACCCCTTTG
AGTCTGCGGTTTGATAAGCATAAGCTGATTCGGGGTCAAAGAGATGTGTGTTCACATGAT
ACTCCAAGGAACAACACTATGAACCTTTAGAGTATACTTCTAGATATTCTTTGTGCAAGT
GCCTCTTGTATCATATCTGGGATTTACTCCCTCTGGTCCAGTTCGTAAGGTGCACACACA
TATTAAGGTTCAAACTTCACAATCTTTGATTAATAACTTAGCCAACATGTTTTAACTATT
GTATTAAAATTTAAAAACATGATATGGTTAGATTTGTAATGAAATGTACTATCCAACGAT
CATAAGATTATAACCATAGAAGTATAATATTAATCAAATGACTGGTTAAAGTGTCAATTG
GGGGATCGTGCCATGTCAGACAATTCTTTGTAAAATGCAACAGAGGCGGGAGTATTTGTA
TACCTTGGGAAATGATGCTTGGATTGAATAATATTTGTTGTTAAATAGTTAAGTGTCAGA
TTTGTTAATGTTTGTATCTTCCTTTGCAGTTTTCACAGTCAGTAACAACATTCACTGAAG
AATTTGATTTCACGGCCATGAATGAGAAGTTTAACAAAGATGAAGTCTGGGGTCATCTTG
GAAAGAAATCGCAGTCAAGGGACAAGGATGGTGAGGTGGGAGATGATGTGTTTGATGAAG
ACCTGGAGGTTGAGGAAACTGATAACCCAGAGCTATCTGTTAAGCCTGTTTATGTCAAGG
ATGATTTTTTTGATTCCCTCTCTAGTGGAACATTTGGACGTGGAGGACCAAATGGAAGGG
GTAGACCTTCTGAACGGCGCAGAGTAGATACAGAGACTTTTGGCGAATTTCCACGGCACA
GGCAACCCTACCGTGGTGGCGCCCGAGGTTACCGTGGCGGTGGACGTTCCCGAGGTTCAT
ATTATGGTGGCAGAGGCTATGGAAACACAGGGACCGGAGGCTATGGAAACACAGGGACAG
GTGGCCCTGGAAATTCTTATTCTCACCGGGGCTATGGGAGAGATTGATTATAGCAGAAAT
GTGCAGGCAACCATACTTGTGGGTGTTGTAGTCTTTTACCACATGTATGATGTATCCCTT
ACTACTGGTGCAGCGGTGAGAAGTCGTTTTCCCACTGAGCCGAGCCAAAGGTTTAATGGG
CTCTAAATTTTACACTATAAGATTTAAGGATTGG