Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d040123_T045
CDS Infomation	cds chromosome:B73_RefGen_v4:3:28448384:28454908:-1 gene:Zm00001d040123 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	ATGAAGCGCGGCACCAGGGACGACGCCCTCATGGGGTCCCAGCTCAAACGCTCGAACGTT GTCCGATCCGATCCGTCGGCTCAGCCACAGCATATGTCTGTGCCTGGTTCAGCGTCTGCG GCCGCACCGCCGCCTCAGGCTGGCGCTGCTCCGCCGGCGCAGCCGCAGCAGCCGTCCGGT GCGGCCTTTACCAACCAGAAGCTGACGACAAATGATGCGCTCGTCTACCTTAAGGCAGTT AAGGATAAGTTTCAGGACAAACGGGAGAAGTACGAGGAGTTCCTCGAGGTCATGCGCGAC TTCAAGAGCGAGAGGATTGACACCAATGGAGTGATTGTCCGTGTCAAAACGCTGTTCAAC GGGTACCCTGAACTGATCCTTGGGTTCAACGCCTTCTTGCCTAAGGGCTATGCGATCAAG CTACAAGAAGAGAAGAAACCTGTCGATTTTGTGGAAGCTATCAATTTCGTGAACAAGATA AAGAATCGGTTTCAGCATGATGAACAAGTTTACAAGGCATTCTTGGACATCCTCAACATG TACCGCAAGGATAATAAGTCTATCCAAGATGTTTACCATGAGGTTGCTATGCTGTTCAAA GACCATAAAGATTTGCTTGAAGAGTTCCAGCACTTCCTGCCTGATACTTCAGTGGCTCCA CAAGCAGTGGCCTCAAAGGGTGGTTTGGTTAAGCGGGAGGACAGGAGCTCTTTAGTGCCT CCTGCAAATAAGATCCTTCACAATGATAAGAGGGACAGAGTTTACCTGTCACATGCTGAC CGTGATTTTAGTGTTGACCGTCCTGATGTGGAGCATGATCGCCAGAGAAGACGTCTTGAT AAAGACAAAGAACGGAAGGTGGAAAGGGACAGAAGGGATTATGAGAGAGAAGACAAGGAT GGTGAACATGACAGCAGAGACCTGGAGCTAGGACAGCGTAAGCGAAAGCCTTTTTCAAGG AATATCGAGGATAATGTAGGTGCTGAGACACACCAAGGAGGCCCCAGTGAGAATCATGGA ATCCACAGTGTATCTGCTTCATCATATGACGATAAGGATGCGCTGAAGAGTGTATACACA CATGAGTTCCATTTCTGCGAGAAGGTGAAGGAAAAGCTGGAGCATGAAGCTTACCAAGAG TTTTTGAAATGTCTACACATCTATAGCCAAGAGATTATCACAAGAAGTGAACTGAAGAAC TTGGTGAATGATATACTCCAACATTATCCAGATCTTATGGAAGGGTTTAACGAATTCTTG GAGCATTGTGAAAATATAGATGGATTTCTTGCCGGTGTCTTCAACAAAAGGCCAAGCACG AGGGCTGTTAAAACTGAGGATAAAGAAAAGGATAGAGATCGGGACAGGGAGGACAAGGAT AGAGATCGGGAAAAGGAAAGAGAAAAGGAACGAGAAAGGCTCGATAAAGGATCAACATTC AATTCAAAGGAAGGTTCTAGTCACAAACCTTCTATGTTCTCTGGCAAAGAGAAGTACAAC CTATCCAAACCAATATCAGAGCTTGATCTCTCAAACTGTCAACGCTGCACTCCGAGTTAC CGGCTTCTACCTAAAAATTATCCCATGCCCCCAGCCAGCAACAGGACTGATCTTGGAGCT TCTGTTCTGAATGATCACTGGGTATCAGTGACATCAGGAAGTGAAGATTATTCATTTAAA CACATGCGGAAGAATCAGTACGAGGAAAGCTTATTTAGATGCGAGGATGACAGGTTTGAG TTGGATATGCTGTTGGAATCAGTTAATGCAGCGACTAAGCGTGTTGAAGAGCTGATAGAG AAGATGCAGGACAACTCAGTCAAACCTGAGAGCCCAATACGCATCGATGAACATTTGACT CCGTTGAACCTGAGGTGCATTGAGCGACTGTACGGTGATCATGGTCTGGATGTGATGGAT GTTCTACGCAAAAATGCTAGTGTTGCATTGCCAGTTATTCTAACTAGGCTCAAACAGAAG CAGGAGGAGTGGTCAAGGTGTCGATCAGATTTCAACAAAGTTTGGGCCGAAATATATGCC AAAAATTATCACAAGTCACTTGACCATCGTAGTTTCTATTTCAAGCAGCAAGATACGAAG AACCTGAGCACAAAGTGTACGTAA

Peptide Sequence

PEP ID	Zm00001d040123_P045
PEP Infomation	pep chromosome:B73_RefGen_v4:3:28448384:28454908:-1 gene:Zm00001d040123 transcript:Zm00001d040123_T045 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	MKRGTRDDALMGSQLKRSNVVRSDPSAQPQHMSVPGSASAAAPPPQAGAAPPAQPQQPSG AAFTNQKLTTNDALVYLKAVKDKFQDKREKYEEFLEVMRDFKSERIDTNGVIVRVKTLFN GYPELILGFNAFLPKGYAIKLQEEKKPVDFVEAINFVNKIKNRFQHDEQVYKAFLDILNM YRKDNKSIQDVYHEVAMLFKDHKDLLEEFQHFLPDTSVAPQAVASKGGLVKREDRSSLVP PANKILHNDKRDRVYLSHADRDFSVDRPDVEHDRQRRRLDKDKERKVERDRRDYEREDKD GEHDSRDLELGQRKRKPFSRNIEDNVGAETHQGGPSENHGIHSVSASSYDDKDALKSVYT HEFHFCEKVKEKLEHEAYQEFLKCLHIYSQEIITRSELKNLVNDILQHYPDLMEGFNEFL EHCENIDGFLAGVFNKRPSTRAVKTEDKEKDRDRDREDKDRDREKEREKERERLDKGSTF NSKEGSSHKPSMFSGKEKYNLSKPISELDLSNCQRCTPSYRLLPKNYPMPPASNRTDLGA SVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNAATKRVEELIE KMQDNSVKPESPIRIDEHLTPLNLRCIERLYGDHGLDVMDVLRKNASVALPVILTRLKQK QEEWSRCRSDFNKVWAEIYAKNYHKSLDHRSFYFKQQDTKNLSTKCT

Transcript Sequence

Transcript ID	Zm00001d040123_T045
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:28448384:28454908:-1 gene:Zm00001d040123 gene_biotype:protein_coding transcript_biotype:protein_coding description:Paired amphipathic helix protein Sin3-like 3
Sequence	CCGAGCCGTTTCCCTTTCATTTCGTCTCTCCTCCTCGCTCCCTTTTCTCTTCTGGCGCCC CCACCCCCCTGGCGATTAGCTCCCGCCCGCCTCCCGCTCCGCTCCCCACCGCGCTCGCCG TGCTGTCTCGGCGCTGCGCCCGGCGGCGCCGTGAGGGTTGGAGGGTGCTCGTGGCCGGCA GATCCGGCGTCGGCGTCGGCGTCGGCGGACAGGCTCGGAGGTGAGATCGGCGGCGGGGAA GGGCAGAGCGCGCGAGGTGGTCGAGGGAGGAATCGGCTGCGCGCGGAGGCGGGGAGGAGG TCGAGCTCGCCTGGTGCTGCATGGGGGCATGAAGCGCGGCACCAGGGACGACGCCCTCAT GGGGTCCCAGCTCAAACGCTCGAACGTTGTCCGATCCGATCCGTCGGCTCAGCCACAGCA TATGTCTGTGCCTGGTTCAGCGTCTGCGGCCGCACCGCCGCCTCAGGCTGGCGCTGCTCC GCCGGCGCAGCCGCAGCAGCCGTCCGGTGCGGCCTTTACCAACCAGAAGCTGACGACAAA TGATGCGCTCGTCTACCTTAAGGCAGTTAAGGATAAGTTTCAGGACAAACGGGAGAAGTA CGAGGAGTTCCTCGAGGTCATGCGCGACTTCAAGAGCGAGAGGATTGACACCAATGGAGT GATTGTCCGTGTCAAAACGCTGTTCAACGGGTACCCTGAACTGATCCTTGGGTTCAACGC CTTCTTGCCTAAGGGCTATGCGATCAAGCTACAAGAAGAGAAGAAACCTGTCGATTTTGT GGAAGCTATCAATTTCGTGAACAAGATAAAGAATCGGTTTCAGCATGATGAACAAGTTTA CAAGGCATTCTTGGACATCCTCAACATGTACCGCAAGGATAATAAGTCTATCCAAGATGT TTACCATGAGGTTGCTATGCTGTTCAAAGACCATAAAGATTTGCTTGAAGAGTTCCAGCA CTTCCTGCCTGATACTTCAGTGGCTCCACAAGCAGTGGCCTCAAAGGGTGGTTTGGTTAA GCGGGAGGACAGGAGCTCTTTAGTGCCTCCTGCAAATAAGATCCTTCACAATGATAAGAG GGACAGAGTTTACCTGTCACATGCTGACCGTGATTTTAGTGTTGACCGTCCTGATGTGGA GCATGATCGCCAGAGAAGACGTCTTGATAAAGACAAAGAACGGAAGGTGGAAAGGGACAG AAGGGATTATGAGAGAGAAGACAAGGATGGTGAACATGACAGCAGAGACCTGGAGCTAGG ACAGCGTAAGCGAAAGCCTTTTTCAAGGAATATCGAGGATAATGTAGGTGCTGAGACACA CCAAGGAGGCCCCAGTGAGAATCATGGAATCCACAGTGTATCTGCTTCATCATATGACGA TAAGGATGCGCTGAAGAGTGTATACACACATGAGTTCCATTTCTGCGAGAAGGTGAAGGA AAAGCTGGAGCATGAAGCTTACCAAGAGTTTTTGAAATGTCTACACATCTATAGCCAAGA GATTATCACAAGAAGTGAACTGAAGAACTTGGTGAATGATATACTCCAACATTATCCAGA TCTTATGGAAGGGTTTAACGAATTCTTGGAGCATTGTGAAAATATAGATGGATTTCTTGC CGGTGTCTTCAACAAAAGGCCAAGCACGAGGGCTGTTAAAACTGAGGATAAAGAAAAGGA TAGAGATCGGGACAGGGAGGACAAGGATAGAGATCGGGAAAAGGAAAGAGAAAAGGAACG AGAAAGGCTCGATAAAGGATCAACATTCAATTCAAAGGAAGGTTCTAGTCACAAACCTTC TATGTTCTCTGGCAAAGAGAAGTACAACCTATCCAAACCAATATCAGAGCTTGATCTCTC AAACTGTCAACGCTGCACTCCGAGTTACCGGCTTCTACCTAAAAATTATCCCATGCCCCC AGCCAGCAACAGGACTGATCTTGGAGCTTCTGTTCTGAATGATCACTGGGTATCAGTGAC ATCAGGAAGTGAAGATTATTCATTTAAACACATGCGGAAGAATCAGTACGAGGAAAGCTT ATTTAGATGCGAGGATGACAGGTTTGAGTTGGATATGCTGTTGGAATCAGTTAATGCAGC GACTAAGCGTGTTGAAGAGCTGATAGAGAAGATGCAGGACAACTCAGTCAAACCTGAGAG CCCAATACGCATCGATGAACATTTGACTCCGTTGAACCTGAGGTGCATTGAGCGACTGTA CGGTGATCATGGTCTGGATGTGATGGATGTTCTACGCAAAAATGCTAGTGTTGCATTGCC AGTTATTCTAACTAGGCTCAAACAGAAGCAGGAGGAGTGGTCAAGGTGTCGATCAGATTT CAACAAAGTTTGGGCCGAAATATATGCCAAAAATTATCACAAGTCACTTGACCATCGTAG TTTCTATTTCAAGCAGCAAGATACGAAGAACCTGAGCACAAAGTGTACGTAAAACTTCAA TTACATGTGAATGTTTCTTCTGGTTATAGTTGCACCATTTCCTGGT