Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040090_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:27138381:27141104:-1 gene:Zm00001d040090 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:outer cell layer1 description:Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Sequence

ATGAGCTTCGGGAGCCTATTCGACGGCGGGTCCGGCGGCGGCGGAGGAGGAGGAGGGATG
CAGTTCCCGTTCTCGACCGGGTTCTCGTCCTCGCCGGCCCTCTCCCTCGGTCTGGAGAAC
CCCGGCGGCGGCATGGTCGGCCGGATGCTCCCCGTGGGCGGCGCCCCCGCGGCCGGCGGG
ATGGCGAGGGACGCCGCCGACGCCGAGAACGACAGCCGCTCCGGGAGCGACCACCTGGAC
GCCATGTCCGCCGGCGCCGGCGCCGAGGACGAGGACGACGCTGAGCCGGGCAACCCGCGC
AAGCGCAAGAAGCGCTACCACCGCCACACGCCGCAGCAGATCCAGGAGCTCGAAGCGCTG
TTCAAGGAGTGCCCTCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGC
CTCGACCCGCGCCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGACGCAA
CTGGAGCGGCACGAGAACGCGCTTCTCAAGCAAGAGAACGACAAGCTGCGGGCCGAGAAC
ATGGCGATCCGGGAGGCGATGCGCAGCCCGATGTGCGGCAGCTGCGGGAGCCCCGCCATG
CTCGGGGAGGTGTCCCTGGAGGAGCAGCACCTGTGCATCGAGAATGCGCGGCTCAAGGAC
GAGCTCAACCGCGTCTACGCCCTCGCCACCAAGTTCCTCGGCAAGCCCATGCCCGTCCTC
TCGGGGCCCATGCTGCAGCCGAACCTGTCGCTGCCCATGCCGAGCTCGTCGCTGGAGCTG
GCAGTAGGCGGCCTCCGTGGCCTAGGGTCTATCCCTTCCTTGGACGAGTTTGCTGGCGGT
GTGTCTAGCCCGTTGGGCACGGTGATCACGCCTGCACGGGCGACCGGATCTGCTCCGCCG
CCTATGGTGGGCGTCGACAGGTCCATGCTGCTGGAGCTTGCGATCAGCGCCATGGATGAA
CTAGTTAAGCTGGCACAGGTTGACGAGCCCTTGTGGCTTCCCAGCCTCAGTGGCTCTCCC
GACAAGAAGCTGCTCAACTTTGAGGAGTATGCCCACTCGTTCTCTCCGTCCGTCGGCGCC
GTGAAGCCTGTGGGCTATGTATCCGAGGCCTCTAGGGAGTCTGGCCTCGTCATCATTGAC
AACAGCCTTGCTCTTGTAGAGACCCTTATGGACGTGAGACGGTGGTCTGATATGTTCTCG
TGCATGATTGCTAAGGCCACAGTCCTAGAGGAGGTGACATCTGGCATTGCAGGAAGTAGG
AATGGTGCGCTGCTGCTGATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATC
AGGGAGGTCACATTTCTCAGGTTTTGCAAGCAGCTGGCTGAGGGTGCATGGGCAGTAGTG
GATGTGTCCATTGACGGATTGGTGAGAGATCACAACTCTGGAACAGCATCCAACGCCGGA
AATATACGGTGCAGGAGGTTGCCTTCTGGCTGTGTGATGCAGGACACTCCCAATGGCTAC
TGCAAGGTACTAGCAACCAAAATCCATTTACTTCGTTTCTGTCTGTAG

Peptide Sequence

PEP ID

Zm00001d040090_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:27138381:27141104:-1 gene:Zm00001d040090 transcript:Zm00001d040090_T003 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:outer cell layer1 description:Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Sequence

MSFGSLFDGGSGGGGGGGGMQFPFSTGFSSSPALSLGLENPGGGMVGRMLPVGGAPAAGG
MARDAADAENDSRSGSDHLDAMSAGAGAEDEDDAEPGNPRKRKKRYHRHTPQQIQELEAL
FKECPHPDEKQRGELSKRLGLDPRQVKFWFQNRRTQMKTQLERHENALLKQENDKLRAEN
MAIREAMRSPMCGSCGSPAMLGEVSLEEQHLCIENARLKDELNRVYALATKFLGKPMPVL
SGPMLQPNLSLPMPSSSLELAVGGLRGLGSIPSLDEFAGGVSSPLGTVITPARATGSAPP
PMVGVDRSMLLELAISAMDELVKLAQVDEPLWLPSLSGSPDKKLLNFEEYAHSFSPSVGA
VKPVGYVSEASRESGLVIIDNSLALVETLMDVRRWSDMFSCMIAKATVLEEVTSGIAGSR
NGALLLMKAELQVLSPLVPIREVTFLRFCKQLAEGAWAVVDVSIDGLVRDHNSGTASNAG
NIRCRRLPSGCVMQDTPNGYCKVLATKIHLLRFCL

Transcript Sequence

Transcript ID

Zm00001d040090_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:27138381:27141104:-1 gene:Zm00001d040090 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:outer cell layer1 description:Homeobox-leucine zipper protein ANTHOCYANINLESS 2
Sequence

GACGGGACTCTTCCTTCGCTGGACGACTCCCTGTGCCCGTCTCGTCGTCTCCTCTCCTCA
CCTCCCCTCCACCCCCACTTGCTATTTTGACCCTCCTCCCGTTCCTTTCTTTAATCCATC
ATCCGCCTCGCTATCCCTCCCTCCCTCCCTCCCTGCCCGCCGTGGAGGGTTTGGGATTTT
GCGGACCTCAGCAGCTCCATATCTCAGTCACACACTCACGCGCGCGCGGGGGCCGGGGGC
CGCTGGACCCGCCGTTCTCCTTCTCCTCCCCCCCTCGTTCCTCTCGTCTCACCACTACTA
CCCTACACGCGCCGCGGCTAGGATTCCGCCGAGGAGACGCTGCGCGCGTGGATCTCCGGT
GCTGTCCTGCTAGCGTGCGACGAGGCCAGGCAGGCGCGCGGCCGGCGCCATGAGCTTCGG
GAGCCTATTCGACGGCGGGTCCGGCGGCGGCGGAGGAGGAGGAGGGATGCAGTTCCCGTT
CTCGACCGGGTTCTCGTCCTCGCCGGCCCTCTCCCTCGGTCTGGAGAACCCCGGCGGCGG
CATGGTCGGCCGGATGCTCCCCGTGGGCGGCGCCCCCGCGGCCGGCGGGATGGCGAGGGA
CGCCGCCGACGCCGAGAACGACAGCCGCTCCGGGAGCGACCACCTGGACGCCATGTCCGC
CGGCGCCGGCGCCGAGGACGAGGACGACGCTGAGCCGGGCAACCCGCGCAAGCGCAAGAA
GCGCTACCACCGCCACACGCCGCAGCAGATCCAGGAGCTCGAAGCGCTGTTCAAGGAGTG
CCCTCACCCGGACGAGAAGCAGCGCGGCGAGCTCAGCAAGAGGCTCGGCCTCGACCCGCG
CCAGGTCAAGTTCTGGTTCCAGAACCGCCGCACGCAGATGAAGACGCAACTGGAGCGGCA
CGAGAACGCGCTTCTCAAGCAAGAGAACGACAAGCTGCGGGCCGAGAACATGGCGATCCG
GGAGGCGATGCGCAGCCCGATGTGCGGCAGCTGCGGGAGCCCCGCCATGCTCGGGGAGGT
GTCCCTGGAGGAGCAGCACCTGTGCATCGAGAATGCGCGGCTCAAGGACGAGCTCAACCG
CGTCTACGCCCTCGCCACCAAGTTCCTCGGCAAGCCCATGCCCGTCCTCTCGGGGCCCAT
GCTGCAGCCGAACCTGTCGCTGCCCATGCCGAGCTCGTCGCTGGAGCTGGCAGTAGGCGG
CCTCCGTGGCCTAGGGTCTATCCCTTCCTTGGACGAGTTTGCTGGCGGTGTGTCTAGCCC
GTTGGGCACGGTGATCACGCCTGCACGGGCGACCGGATCTGCTCCGCCGCCTATGGTGGG
CGTCGACAGGTCCATGCTGCTGGAGCTTGCGATCAGCGCCATGGATGAACTAGTTAAGCT
GGCACAGGTTGACGAGCCCTTGTGGCTTCCCAGCCTCAGTGGCTCTCCCGACAAGAAGCT
GCTCAACTTTGAGGAGTATGCCCACTCGTTCTCTCCGTCCGTCGGCGCCGTGAAGCCTGT
GGGCTATGTATCCGAGGCCTCTAGGGAGTCTGGCCTCGTCATCATTGACAACAGCCTTGC
TCTTGTAGAGACCCTTATGGACGTGAGACGGTGGTCTGATATGTTCTCGTGCATGATTGC
TAAGGCCACAGTCCTAGAGGAGGTGACATCTGGCATTGCAGGAAGTAGGAATGGTGCGCT
GCTGCTGATGAAGGCTGAGCTACAGGTGCTCTCACCTCTAGTGCCCATCAGGGAGGTCAC
ATTTCTCAGGTTTTGCAAGCAGCTGGCTGAGGGTGCATGGGCAGTAGTGGATGTGTCCAT
TGACGGATTGGTGAGAGATCACAACTCTGGAACAGCATCCAACGCCGGAAATATACGGTG
CAGGAGGTTGCCTTCTGGCTGTGTGATGCAGGACACTCCCAATGGCTACTGCAAGGTACT
AGCAACCAAAATCCATTTACTTCGTTTCTGTCTGTAGTGTTCGCATGTCGAGATGGGGTA
GTGTAAAATGGTACTCTTTGGACCACCTACTTCATACTAGCAGCTCGTGTGGGGCCTAAT
CGAGTTGACGTGACTGTCACTCTGTAAAGTTTCTGAACTTTTACATCAAGTAACCACGGT
GGCGGATCTATCCTCCCCTGATGAGCTT