Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040056_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:3:25353208:25358267:1 gene:Zm00001d040056 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGGTTTCCGCGCCGCCTCCGCCGCCGCCGCTGCCGCGGTGGCCGTGTTTGCGGCGGCG
GGGCTGGCGGTCACCGCCGCTTCCTCCGGTGACTCGCTCGCCGACCTCGGAGGCGCGGCG
AGGGAGATCGAAAGCGCACCAGAGGTCAAGAATCTGGGACCATGGGCAAAGGGGCTGCTG
AAAGGCATGCCGCAGGCAGCGGCGGGACCGGCAGCCATGGCGCCTGTTGCGAAGTATCCG
CTGGTTCTGGCAGAGGACCGGACGCGGCGGCCGGATGTTCTCAGGCATCTCAAAGTGTAT
GAAGGAGGGTGGAACGTCACCAATAAGCACTACTGGGCGTCTGTTTCATTCACAGGTGTT
TCTGGATTTCTTCTCGGTGCTTTGTGGTTCATATTTTTCGGGATAGCTGTGGCTGGACGA
TGCTATTTTGGAACAAGAATGTCCAAAAGAAAGGTTTCTTATGCAGATGTAGTAGGTCCT
GTGTTGCTTGGGGTCTTCACACTTGCTATAATTTATTTGTTTCACACCAGAGCTGGGTGC
ATTCTCCTTCTGTATGGGCAGAGTAAATTCCATGAAGAAGCTACGCGGACCGTCGATTTT
GTTGTGAACCAATCTGATTTCACTATTCAGACACTAAGGAATGTTACAGAATACTTGTCA
TTTGCACAGACGATCACTGTGGCAGCACTCTATCTTCCATCAGAAGTTCAAGGTCAAATT
GACAGTTTGAAAGGGGATTTGAACAAAGCAGCTGACACAATATCTGTGAAGACAGCAGAA
AATTACAAAATGATAAGAAAAGTTCTCCATATCATGTCAGTTGTATTGATTTGCATAGCC
GTGGTGCTGCTTGTTCTTGTGTTCCTTGGATACGGCCTAGAGAAGTATGGACCGAGATAT
ACAGTTTACATATTTGTTACCTTATGCTGGAAAGCTGTGGCGGCTCTCTTTATCCTTCTA
GGGATTTTCCTGATACTAAACAGCGCTGCGCAGGATACCTGCGAAGCAATGGACCAGTGG
GCCCAGCACCCTCAGGCAGAGACAGCTCTGAGCAGCATCCTTCCGTGTGTGGATGAGAGC
ACGACCAACCGAACGCTGTACCAGAGCAAAGAGGTGGTGGTGAGGCTTGTGGGGATAGTG
AACAGAGCTATCTCCGCTCTTTCAAATCGAAGGCCGCATCACAAGCACCCAGGACAGTTC
ATGCCTTACCTGTGCTCGCCCTACGACTCAAACCTCAACGACCGACCGTGCAAGTATAGG
GAGGCCACGTTTGAAAACGCGACGACAGCATGGTTGAACTACACGTGCATGGCTCAAGAC
ACGGACTTGTGCTCAGGCAACAAGACCTTAACCTACGACATCTACGGCCAACTCGTGCTG
GCTGCAAACGTGAGCTACGCGCTGTACCACTACGCCCCCTTCCTGCTGAACCTCCAGGAC
TGCAAGTTCGTCCGGGCCACCTTCAGCGCCATCGCCTCGCGGTACTGCCCTCCTCTGGGG
CACGACCTCGTGCTGGTCTCCGCGGGTCTGGCGCTCATTGCCTCGGCCTTTGTTCTCTGC
CTCGTCTGGATGCTCTTCGCGGACCGCCCCCGAAGGGAGGAGGTGTCCGATCTGGCGTCG
GGGTCGAGGATCGCGCCGGTAGACAGCTCTCCGTCGTAG

Peptide Sequence

PEP ID

Zm00001d040056_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:3:25353208:25358267:1 gene:Zm00001d040056 transcript:Zm00001d040056_T005 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MGFRAASAAAAAAVAVFAAAGLAVTAASSGDSLADLGGAAREIESAPEVKNLGPWAKGLL
KGMPQAAAGPAAMAPVAKYPLVLAEDRTRRPDVLRHLKVYEGGWNVTNKHYWASVSFTGV
SGFLLGALWFIFFGIAVAGRCYFGTRMSKRKVSYADVVGPVLLGVFTLAIIYLFHTRAGC
ILLLYGQSKFHEEATRTVDFVVNQSDFTIQTLRNVTEYLSFAQTITVAALYLPSEVQGQI
DSLKGDLNKAADTISVKTAENYKMIRKVLHIMSVVLICIAVVLLVLVFLGYGLEKYGPRY
TVYIFVTLCWKAVAALFILLGIFLILNSAAQDTCEAMDQWAQHPQAETALSSILPCVDES
TTNRTLYQSKEVVVRLVGIVNRAISALSNRRPHHKHPGQFMPYLCSPYDSNLNDRPCKYR
EATFENATTAWLNYTCMAQDTDLCSGNKTLTYDIYGQLVLAANVSYALYHYAPFLLNLQD
CKFVRATFSAIASRYCPPLGHDLVLVSAGLALIASAFVLCLVWMLFADRPRREEVSDLAS
GSRIAPVDSSPS

Transcript Sequence

Transcript ID

Zm00001d040056_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:25353208:25358267:1 gene:Zm00001d040056 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GGCTCCCCCTCGTCCGTCTCCCTCCCACCCTTCCGCGCTCCCGCCGTTTCCCAGGGGCCA
GGGCCGACCCACACCGCGCCGGGATCCCTAGATGCGGCCGGGGCGGCGCCGCGAGCCGTG
AGCGCGGTTCCTGCCGTGGCGATGGGTTTCCGCGCCGCCTCCGCCGCCGCCGCTGCCGCG
GTGGCCGTGTTTGCGGCGGCGGGGCTGGCGGTCACCGCCGCTTCCTCCGGTGACTCGCTC
GCCGACCTCGGAGGCGCGGCGAGGGAGATCGAAAGCGCACCAGAGGTCAAGAATCTGGGA
CCATGGGCAAAGGGGCTGCTGAAAGGCATGCCGCAGGCAGCGGCGGGACCGGCAGCCATG
GCGCCTGTTGCGAAGTATCCGCTGGTTCTGGCAGAGGACCGGACGCGGCGGCCGGATGTT
CTCAGGCATCTCAAAGTGTATGAAGGAGGGTGGAACGTCACCAATAAGCACTACTGGGCG
TCTGTTTCATTCACAGGTGTTTCTGGATTTCTTCTCGGTGCTTTGTGGTTCATATTTTTC
GGGATAGCTGTGGCTGGACGATGCTATTTTGGAACAAGAATGTCCAAAAGAAAGGTTTCT
TATGCAGATGTAGTAGGTCCTGTGTTGCTTGGGGTCTTCACACTTGCTATAATTTATTTG
TTTCACACCAGAGCTGGGTGCATTCTCCTTCTGTATGGGCAGAGTAAATTCCATGAAGAA
GCTACGCGGACCGTCGATTTTGTTGTGAACCAATCTGATTTCACTATTCAGACACTAAGG
AATGTTACAGAATACTTGTCATTTGCACAGACGATCACTGTGGCAGCACTCTATCTTCCA
TCAGAAGTTCAAGGTCAAATTGACAGTTTGAAAGGGGATTTGAACAAAGCAGCTGACACA
ATATCTGTGAAGACAGCAGAAAATTACAAAATGATAAGAAAAGTTCTCCATATCATGTCA
GTTGTATTGATTTGCATAGCCGTGGTGCTGCTTGTTCTTGTGTTCCTTGGATACGGCCTA
GAGAAGTATGGACCGAGATATACAGTTTACATATTTGTTACCTTATGCTGGAAAGCTGTG
GCGGCTCTCTTTATCCTTCTAGGGATTTTCCTGATACTAAACAGCGCTGCGCAGGATACC
TGCGAAGCAATGGACCAGTGGGCCCAGCACCCTCAGGCAGAGACAGCTCTGAGCAGCATC
CTTCCGTGTGTGGATGAGAGCACGACCAACCGAACGCTGTACCAGAGCAAAGAGGTGGTG
GTGAGGCTTGTGGGGATAGTGAACAGAGCTATCTCCGCTCTTTCAAATCGAAGGCCGCAT
CACAAGCACCCAGGACAGTTCATGCCTTACCTGTGCTCGCCCTACGACTCAAACCTCAAC
GACCGACCGTGCAAGTATAGGGAGGCCACGTTTGAAAACGCGACGACAGCATGGTTGAAC
TACACGTGCATGGCTCAAGACACGGACTTGTGCTCAGGCAACAAGACCTTAACCTACGAC
ATCTACGGCCAACTCGTGCTGGCTGCAAACGTGAGCTACGCGCTGTACCACTACGCCCCC
TTCCTGCTGAACCTCCAGGACTGCAAGTTCGTCCGGGCCACCTTCAGCGCCATCGCCTCG
CGGTACTGCCCTCCTCTGGGGCACGACCTCGTGCTGGTCTCCGCGGGTCTGGCGCTCATT
GCCTCGGCCTTTGTTCTCTGCCTCGTCTGGATGCTCTTCGCGGACCGCCCCCGAAGGGAG
GAGGTGTCCGATCTGGCGTCGGGGTCGAGGATCGCGCCGGTAGACAGCTCTCCGTCGTAG
AAGCAAGCAAGCAAGCAAGCGGCGCAACGGGATGTCTATGACTATGAGTGAGGCTGCTTG
GTCGCATGGTGACCAGAGTTTAGTACAGTTCCCTTCCATGGCTATGTAAAATAGTTTCGG
TATAGCGAGTTCCGGGAGACGTCGTTGAAGTGCGGAGAGGAGGGGGAGAAACCGGAAGCA
CTTCGGGTGGGGGACAAAAGGCCCCATTTTGCAGTGGAGAGAGTTAGGTGGAAACGAGTG
CTCTGCTTCCTTCTATCGTATGTCAGATCGATGCACCCATGGTGTATGTTGCTGCAAGGA
CAAACGGAATAATCGATCAGGGTTCC