Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040038_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:24228991:24237789:-1 gene:Zm00001d040038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Actin-interacting protein 1-2
Sequence

ATGGAAGATGCAAGTGGGAAATTGAATCGAACTTTGTCTTGCCCTGGTATAGGAGGTGTG
GATGATATGCTTGTTGGTTGTCTCTGGCAGAATGACCACCTCGTGACAGTCTCTCTTGGT
GGGACATTTAATGTGTTCTCTGCAAGCAACCCAGACCAAGAACCAGTTACATTTGCAGGA
CATTTGAAGACTGTTAGTTCTTTGGTCTTCTTTCCTCAAAGTAGCCCAAGAACTATACTA
TCTACTAGCTATGATGGTGTCATCATGAGGTGGATACAGGGTGTTGGATTTGGTGGCAGA
TTGGTGCGCAGAAACAACACTCAAATAAAATGTTTTGCTGCAGTAGAAGAAGAGCTTGTT
ACCTCAGGTTATGATAATAAGGTCTTCAGAATTCCTCTTAATGGAAACCAGTGTGGAGAT
GCTGAGTCAGTTGATATAGGCGGTCAGCCAAATGCTTTGAACCTTGCAATTCAGAAACCT
GAATTTGCACTGATCACTACTGATTCCGGGATTGTGTTGCTGCACAATTCAAAAGTCATT
TCTACAACAAAAGTTAACTATGCCATCACGTCATCTTCAGTGTCTCCTGATGGCACAGAA
GCTGTTGTGGGTGCTCAAGATGGGAAACTGCGAATCTATTCCATCAGTGGCGATACACTC
ACAGAAGAAGCTCTGCTTGAGAAGCACCGGGGTGCTATCACTTCCATACATTATTCGCCA
GATGTTTCTATGTTTGCTTCTGCTGATACCAACAGGGAAGCTGTTGTGTGGGATCGAGCA
AGTAGAGAGGTCAAGCTGAAGAACATGTTGTACCACACAGCCAGGATAAACTCCCTGGCT
TGGTCACCTGACAGTCGATTGGTTGCCACTGGCTCACTGGACACCTGTGCAATTGTCTAC
GAGATAGACAAGCCGGTAGCCAGTCGCGTCACCATCAAGGGAGCCCATCTTGGTGGGGTT
CATGGGTTAACCTTCCTCGACAATGATATTCTGGTGACTGCCGGTGAAGATGCTTGCATT
CGTGTTTGGAAGGTGGTGCAGCAATAG

Peptide Sequence

PEP ID

Zm00001d040038_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:24228991:24237789:-1 gene:Zm00001d040038 transcript:Zm00001d040038_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Actin-interacting protein 1-2
Sequence

MEDASGKLNRTLSCPGIGGVDDMLVGCLWQNDHLVTVSLGGTFNVFSASNPDQEPVTFAG
HLKTVSSLVFFPQSSPRTILSTSYDGVIMRWIQGVGFGGRLVRRNNTQIKCFAAVEEELV
TSGYDNKVFRIPLNGNQCGDAESVDIGGQPNALNLAIQKPEFALITTDSGIVLLHNSKVI
STTKVNYAITSSSVSPDGTEAVVGAQDGKLRIYSISGDTLTEEALLEKHRGAITSIHYSP
DVSMFASADTNREAVVWDRASREVKLKNMLYHTARINSLAWSPDSRLVATGSLDTCAIVY
EIDKPVASRVTIKGAHLGGVHGLTFLDNDILVTAGEDACIRVWKVVQQ

Transcript Sequence

Transcript ID

Zm00001d040038_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:24228991:24237789:-1 gene:Zm00001d040038 gene_biotype:protein_coding transcript_biotype:protein_coding description:Actin-interacting protein 1-2
Sequence

GGCGCAGCTGGTGGAGACGTACGCGTGCTCGCCGGCCACGGAACGCGGCCGTGGAATCCT
CCTGGCCGGGGACCCCAAGACAGACACGATCGCCTACTGCACCGGCCGCAGCGTTATCAT
CCGCCGCCTCGATGCGCCTCTCGACGCTTGGGCCTACCCCGACCACGCCTACCCCACGAC
CGTCGCCCGCTTCTCCCCCAACGGCGAGTGGGTCGCCTCCGCCGACGCCTCCGGCTGCGT
CCGCGTCTGGGGCCGCTACGGTGACCGCGCTCTCAAGGCCGAGTTTCGGCCCCTCTCGGG
ACGCGTCGACGACCTCCGCTGGTCCCCCGACGGCCTACGCATCGTCGTCTCTGGGGACGG
CAAGGGCAAGTCCTTCGTCCGCGCATTTGTGTGGGACTCTGGCAGCACTGTTGGTGAATT
TGATGGGCACTCAAAGAGGGTTCTGAGCTGTGACTTCAAACCAACACGTCCATTTCGCAT
TGTGACATGTGGTGAAGATTTTCTGGCTAACTTCTATGAAGGACCACCATTCAAATTTAA
GCATTCCATAAGGTGCTGGTTTCGAGGCCTACCTAGGGCATGTACAACCCTATTTAATAT
AGGGTCCCTTAAGACGTCTTTAGGGGTTAACTGATAAAAGTACAAGAGACAGGCTCTTCG
CTAAGAGCCCGTCTCTACTCGACTTTCTACACATATTATCTCTTAACTACATTTTTTATC
TAGGGGTTCAGGGTTGTATCATGCGGTCTCTTAGTTATCTCTTATACTTGGAAACCGATC
AATGGCTCAGGGTTGTACACCTGTACATGCTCTAACAGTGTATGGCTAGCCCATCTTCCA
TAGTTGTTTTGTTACGATCTCGCATACCTTTTGCCAATGGGCTAGATATACACATCTGAT
GTGGATTACTATACTACATTTATTACAAGTATGTGATTAAAATCTTACCCTTGTATCAGT
GATGTAGCCATGTTAACAAGGAATGTCATCTATCAGAATTTATCATGTCTTGTATTTACT
GAAGCTGACACACATTGAAGTGACTGGAGTACATAGATGATCTGTCCTGCACCTGCTCCA
TGCATTCAAAGTAGAATGTTCCTATTGATTTACATGATTTGCACATTTTGGGAGCACTTC
TTTTAGTTGTGATTCATTTTGTATTTACGCATCATCCTGTACAGTATTTACTTCTGTCAC
CTGTGATGCATATTTCATATTTTTCAATTCACTTTGCATTTCAGGGATCACTCAAATTTT
GTTAACTGTATCCGGTATGCTCCTGATGGTAGTAAGTTTATCACTGTGAGTTCTGATAAG
AAGGGTTTGATATATGATGGCAAAACTGGAGAAAAAATAGGAGAACTTTCCACTGAAGGC
AATCATACAGGGAGCATATATGCTGTTAGCTGGAGTCCTGACAGTAAACAGGTTCTAACA
GTTTCTGCTGATAAATCTGCAAAAGTATGGGATATCATGGAAGATGCAAGTGGGAAATTG
AATCGAACTTTGTCTTGCCCTGGTATAGGAGGTGTGGATGATATGCTTGTTGGTTGTCTC
TGGCAGAATGACCACCTCGTGACAGTCTCTCTTGGTGGGACATTTAATGTGTTCTCTGCA
AGCAACCCAGACCAAGAACCAGTTACATTTGCAGGACATTTGAAGACTGTTAGTTCTTTG
GTCTTCTTTCCTCAAAGTAGCCCAAGAACTATACTATCTACTAGCTATGATGGTGTCATC
ATGAGGTGGATACAGGGTGTTGGATTTGGTGGCAGATTGGTGCGCAGAAACAACACTCAA
ATAAAATGTTTTGCTGCAGTAGAAGAAGAGCTTGTTACCTCAGGTTATGATAATAAGGTC
TTCAGAATTCCTCTTAATGGAAACCAGTGTGGAGATGCTGAGTCAGTTGATATAGGCGGT
CAGCCAAATGCTTTGAACCTTGCAATTCAGAAACCTGAATTTGCACTGATCACTACTGAT
TCCGGGATTGTGTTGCTGCACAATTCAAAAGTCATTTCTACAACAAAAGTTAACTATGCC
ATCACGTCATCTTCAGTGTCTCCTGATGGCACAGAAGCTGTTGTGGGTGCTCAAGATGGG
AAACTGCGAATCTATTCCATCAGTGGCGATACACTCACAGAAGAAGCTCTGCTTGAGAAG
CACCGGGGTGCTATCACTTCCATACATTATTCGCCAGATGTTTCTATGTTTGCTTCTGCT
GATACCAACAGGGAAGCTGTTGTGTGGGATCGAGCAAGTAGAGAGGTCAAGCTGAAGAAC
ATGTTGTACCACACAGCCAGGATAAACTCCCTGGCTTGGTCACCTGACAGTCGATTGGTT
GCCACTGGCTCACTGGACACCTGTGCAATTGTCTACGAGATAGACAAGCCGGTAGCCAGT
CGCGTCACCATCAAGGGAGCCCATCTTGGTGGGGTTCATGGGTTAACCTTCCTCGACAAT
GATATTCTGGTGACTGCCGGTGAAGATGCTTGCATTCGTGTTTGGAAGGTGGTGCAGCAA
TAGGCCGCTCTTCATTCTGGTGTGCAATGAGAATGTCTGTGCTGTTGATTGGAATAAACT
TTTTTTTTGTTGGTTTGGTGGCTGTTACTCACGGGGTCATAGCATGGTTTGTTGCTTTAT
CTGCGATTTGTGCTCTAAATTTCCTTTACAATTCTTTTTGAGCTGTATTATTTTTGCTTG
TTTTTTTTCAGGAAGACTCCTTTGTAAGTGGATCCGGTATCCCTGCATCTGATTTTGTTA
GGAGTTGTGAGAATATAGGGATACTGTTGTTGCTTTTTCTACCCCAGGTCCCTAAAATAG
TCGTTAATAACTGACTTCGCTGTGGTTAAGTTT