Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040035_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:3:23935439:23937788:-1 gene:Zm00001d040035 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multicopper oxidase LPR2
Sequence

ATGGTAGCCGCCAGAGCACAACTCGCCGCTCTTCTCCTCCTCGTCGCCGCCGTCTGCTCT
GCCACCGGGTTCAGGCCGGGCGGGGGCGGCCCGCCGTCGGTAACGGAGGACACCCTTGAG
AAGGTGGCCGCCTCGCTGGAAATGTACGTCGACGCGCTCCCTCAGATGCCTAAGGTCCTC
GGCTACTCCATCAAGCACGGCCGCCCCACGCCGACTCACCTCACCATCGGGATGTACCAG
AAAAAGTGGAAATTCCACCGGGACCTGCCGCCGACGACCGTGTTCGTGTTCGGCACGTCG
GTGGAGAGCGCGACCTTCCCAGGGCCCACCATCGAGGCGCTGCAGGGGGTCCCGCTGCAG
GTGACGTGGGACAACCACCTCCCCGACCGCCACATCCTGCCGTGGGACCCCACGGTGCCC
ACCGCCATCCCCAGGGGCGGCGGCGTCCCCACGGCCGTCCACCTCCACGGCGGCGTCCAC
CCGCCGCAGTCCGACGGCCACGCCTACGCCTGGTTCACCGCGGGCTTCCGGGAGAGGGGC
CCCGCGTGGACGACGCCCACGTACGCGTACCCGAACGTGCAGTCGCCCGGCGGCGCGCTC
TGGTACCACGACCACGCGCTCGGCCTCACGCGCGCCAACCTCCTCGCGGGCCTCCTCGGC
GCCTACGTCGTCCGGAACCCGGCGGCGGAGGCGCCGCTCGGCCTCCCCCGCGGCGACGCC
TTCGACCGGGTGCTCGTGCTCGCAGACCGCAGCTTCTACGCCGACGGCTCGCTCTACATG
AACCGCACCGGCGACAACCCGGGCGTCCACCCGCAGTGGCAGCCCGAGTACTTCGGGGAG
GCCGTCACCGTCAACGGCAAGGCCTGGCCGTTCCTCCGCGTCGCGCGCCGCCGCTACCGC
TTCCGCGTCATCAACGCCAGCAACGCGCGCTTCTTCAACCTCTCCCTGTCCGCCTCCTCC
GACGGCCTGAGCCTGAGCCTGATCCCGCTCCACGTCGTCGGCTCCGACACCAGCTACCTG
CCCCGGCCGGTCGCCGTGACGCACCTCCTCGTCGCCGCGGCCGAGGCGTTCGACGTCGTC
GTCGATTTCTCCGAGTGCGCGGCCCCCGAGGCGGAGCTCGTCAACACGGCGCCGTACCCG
TACCCCGACGGCGACGCGCCGAACCACCTCAACGGCAAGGTGATGAAGTTCGTCGTCGAG
CCGGCGAGGGTGCGGGACGACGACGACGACTCGAGGGTGCCGGCGCGGCTGCTGGACTAC
GTCAAGGTCGCCGAGGAGGACGCGGCGCGGAGGCGGTACATCGTGTTGTACGAGTACGAG
GACGAGGCGACGGGCGACCCGACGCACCTGTACATCAACGGGAAGCGGCTGGAGGACCCG
GCGACGGAGACGCCTCGGCCGGGCTCCACGGAGGTGTGGGAGGTGATCAACCTCACGCAG
GACAACCACCCGCTGCACCTCCACCTGGCCACGTTCCAAGCCGTGCGCGCGCGGGAGCTC
GACGGCCTGGAGGAGTTCAAGCACTGCATGGAGAGGCTCAACGACGCGGTCCGCTGCGAC
GTGGGCCGGCACGCCGTGGGGGAGGAGGTGGCCGTGCCGGAGCACGAGAGGACGTGGAAG
AACGTCGTCAAGATCGCGCCGGGGTTCATGACCACGGTGGTCGTCAAGTTCCTCATGGTA
GACACCGGCAGGAGCTACCCGTTCGACGCCACGGCCGAGCCAGGATACGTCTACCATTGC
CACATTTTGGATCATGAGGACAACGCCATGATTCGGCCGTTGAAACTGATCAAATGA

Peptide Sequence

PEP ID

Zm00001d040035_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:3:23935439:23937788:-1 gene:Zm00001d040035 transcript:Zm00001d040035_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multicopper oxidase LPR2
Sequence

MVAARAQLAALLLLVAAVCSATGFRPGGGGPPSVTEDTLEKVAASLEMYVDALPQMPKVL
GYSIKHGRPTPTHLTIGMYQKKWKFHRDLPPTTVFVFGTSVESATFPGPTIEALQGVPLQ
VTWDNHLPDRHILPWDPTVPTAIPRGGGVPTAVHLHGGVHPPQSDGHAYAWFTAGFRERG
PAWTTPTYAYPNVQSPGGALWYHDHALGLTRANLLAGLLGAYVVRNPAAEAPLGLPRGDA
FDRVLVLADRSFYADGSLYMNRTGDNPGVHPQWQPEYFGEAVTVNGKAWPFLRVARRRYR
FRVINASNARFFNLSLSASSDGLSLSLIPLHVVGSDTSYLPRPVAVTHLLVAAAEAFDVV
VDFSECAAPEAELVNTAPYPYPDGDAPNHLNGKVMKFVVEPARVRDDDDDSRVPARLLDY
VKVAEEDAARRRYIVLYEYEDEATGDPTHLYINGKRLEDPATETPRPGSTEVWEVINLTQ
DNHPLHLHLATFQAVRARELDGLEEFKHCMERLNDAVRCDVGRHAVGEEVAVPEHERTWK
NVVKIAPGFMTTVVVKFLMVDTGRSYPFDATAEPGYVYHCHILDHEDNAMIRPLKLIK

Transcript Sequence

Transcript ID

Zm00001d040035_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:23935439:23937788:-1 gene:Zm00001d040035 gene_biotype:protein_coding transcript_biotype:protein_coding description:Multicopper oxidase LPR2
Sequence

ATTCAGACTGAGGTGTACTGTAATAAGCAATATATATAGCCCAGCCGGCCGGGCGACATG
GTAGCCGCCAGAGCACAACTCGCCGCTCTTCTCCTCCTCGTCGCCGCCGTCTGCTCTGCC
ACCGGGTTCAGGCCGGGCGGGGGCGGCCCGCCGTCGGTAACGGAGGACACCCTTGAGAAG
GTGGCCGCCTCGCTGGAAATGTACGTCGACGCGCTCCCTCAGATGCCTAAGGTCCTCGGC
TACTCCATCAAGCACGGCCGCCCCACGCCGACTCACCTCACCATCGGGATGTACCAGAAA
AAGTGGAAATTCCACCGGGACCTGCCGCCGACGACCGTGTTCGTGTTCGGCACGTCGGTG
GAGAGCGCGACCTTCCCAGGGCCCACCATCGAGGCGCTGCAGGGGGTCCCGCTGCAGGTG
ACGTGGGACAACCACCTCCCCGACCGCCACATCCTGCCGTGGGACCCCACGGTGCCCACC
GCCATCCCCAGGGGCGGCGGCGTCCCCACGGCCGTCCACCTCCACGGCGGCGTCCACCCG
CCGCAGTCCGACGGCCACGCCTACGCCTGGTTCACCGCGGGCTTCCGGGAGAGGGGCCCC
GCGTGGACGACGCCCACGTACGCGTACCCGAACGTGCAGTCGCCCGGCGGCGCGCTCTGG
TACCACGACCACGCGCTCGGCCTCACGCGCGCCAACCTCCTCGCGGGCCTCCTCGGCGCC
TACGTCGTCCGGAACCCGGCGGCGGAGGCGCCGCTCGGCCTCCCCCGCGGCGACGCCTTC
GACCGGGTGCTCGTGCTCGCAGACCGCAGCTTCTACGCCGACGGCTCGCTCTACATGAAC
CGCACCGGCGACAACCCGGGCGTCCACCCGCAGTGGCAGCCCGAGTACTTCGGGGAGGCC
GTCACCGTCAACGGCAAGGCCTGGCCGTTCCTCCGCGTCGCGCGCCGCCGCTACCGCTTC
CGCGTCATCAACGCCAGCAACGCGCGCTTCTTCAACCTCTCCCTGTCCGCCTCCTCCGAC
GGCCTGAGCCTGAGCCTGATCCCGCTCCACGTCGTCGGCTCCGACACCAGCTACCTGCCC
CGGCCGGTCGCCGTGACGCACCTCCTCGTCGCCGCGGCCGAGGCGTTCGACGTCGTCGTC
GATTTCTCCGAGTGCGCGGCCCCCGAGGCGGAGCTCGTCAACACGGCGCCGTACCCGTAC
CCCGACGGCGACGCGCCGAACCACCTCAACGGCAAGGTGATGAAGTTCGTCGTCGAGCCG
GCGAGGGTGCGGGACGACGACGACGACTCGAGGGTGCCGGCGCGGCTGCTGGACTACGTC
AAGGTCGCCGAGGAGGACGCGGCGCGGAGGCGGTACATCGTGTTGTACGAGTACGAGGAC
GAGGCGACGGGCGACCCGACGCACCTGTACATCAACGGGAAGCGGCTGGAGGACCCGGCG
ACGGAGACGCCTCGGCCGGGCTCCACGGAGGTGTGGGAGGTGATCAACCTCACGCAGGAC
AACCACCCGCTGCACCTCCACCTGGCCACGTTCCAAGCCGTGCGCGCGCGGGAGCTCGAC
GGCCTGGAGGAGTTCAAGCACTGCATGGAGAGGCTCAACGACGCGGTCCGCTGCGACGTG
GGCCGGCACGCCGTGGGGGAGGAGGTGGCCGTGCCGGAGCACGAGAGGACGTGGAAGAAC
GTCGTCAAGATCGCGCCGGGGTTCATGACCACGGTGGTCGTCAAGTTCCTCATGGTAGAC
ACCGGCAGGAGCTACCCGTTCGACGCCACGGCCGAGCCAGGATACGTCTACCATTGCCAC
ATTTTGGATCATGAGGACAACGCCATGATTCGGCCGTTGAAACTGATCAAATGATCGATG
ATTCGTCCACTACTTGGGCTACAGAATTTCACTGGAAATAGCTCATTCGTTTCAAGAGAA
AAAATGCGGTTAGCCAAACACTAAGTTAAGCAACCGAAATGTAAAATGGCTTCAGCTGTT
ATCAGACTATACAAAAGGCAACAATGTTCTTT