Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040033_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:3:23716296:23728529:-1 gene:Zm00001d040033 gene_biotype:protein_coding transcript_biotype:protein_coding description:Factor of DNA methylation 1
Sequence

ATGCTTATGGAGCCCCAAAATCTTGGAAACACAGACGATCAGTTTGTCTGGCCTTGGATG
GGTGTTCTAGTTAATGTGCCTACTGAGTGGAAGAATGGGCGCCAAGTTGGAGAGAGTGGA
AATCGGCTTAAAGAGCAACTTTCACGCTTCTGCCCTCAGAAGGTTATTCCTTTATGGAGT
TATAGAGGTCACACCGGCAATGCTATTGTTGAGTTTGCAAAAGACTGGACTGGCTTCAAA
AATGCGCTTGCCTTTGAAAATCATTTTGAGGCCGAGGGATATGGCAAAAGGGATTGGAAG
CTGAAGTACAGTGGGTCAGAGATGTTTGGATGGGTTGCAAGAGCTGATGATCATAGATGC
CAAGGGCCTATAGGAGACTATTTGCGAAAAAATGGTGATCTGAAAACTGTTGGTGATCTT
GAAACTGAAGGGACCCGTAAAACTGACAAGCTTGTGGCAAATTTAGCTAGTCAGATTGAA
GTAAAGAACAAGCATGTGCAAGAACTGGAATCCAAGTGCAATGAGACGACCGCATCACTT
GACAGGATGATGGAGCAAAGGGAGCAGATACTCCAGAAGTATAATGAAGAAATTCGCAAG
ATGCAGCAAATTGCTCGTAGGCATTCGCAGATGATCATTGATGATAATAAAAAACTCCAC
AAAGAGTTGGAGTCCAAGATGCAGGAACTTGACTTAAGATCCAAGGAGCTTGATGACATA
GCTCTGCAAAGGGATTGTGACAGAAGAAATCTTCAGCAAGAGAAGGAAAAGAACAAAATT
AAAACTAAGCATCTCATGATGGCAACAATGGAGCAACAGAAGGCCGACGAGAATGTGCTT
AAGCTTGTCGAAGAACATAAGAGAGAGAAACAAGCTGCTCTAGGGAAGATTCTCAGGTTA
CAACAACAATTGGACGCCAAACAGAAGCTTGAACTGGAAGTACAAACGCTGGAAAGCAAG
ATGAAAGTTATGATGCATATGCCAGGTGATCAGGATTCTGAGTCAAAGAAGAAGATGGAT
GAACTTGCTGAGGAGCTGAAGGAAAAGGTCGATGAATTGGAAGCAATGGAGTCTCTGAAC
CAAACTCTGATTATCAAGGAAAGGAAGAGCAACGATGAGTTGCAACACGCTCGGAAGGAG
CTGATAGATGGCTTTATGGAGCTTGCTGTTGTTGGCCGAGCTAACATAGGTATAAAGAGA
ATGGGTGAGCTTGATCTCAAAGCATTCGGAATTGCTTGCAAGAAAAGGTTACCAAAGGAG
GATGCAGAAGTCATTTCTGCTACCCTTTGTTCAAAGTGGCAAGAAGAAATTAGAAACCCA
AGCTGGTACCCTTTTAAGGTTAAGGTGGTGGATGGGAAAGAAATGGAAATTCTCAAAGAG
GACGATGAGATGCTCCAGGAGCTGAAAGAAGAGCACGGTGAAGAAATTTATGGGTTGGTA
ACAAAGGCCCTGCTTGAGATCAATGAGTACAACCCTAGTGGCCGCTATCCTGTACCAGAG
CTGTGGAACTACAAGGAGGGCCGTAAAGCAACACTGAAGGAAGCCGTCCAGCACGTCATG
AGGCAGTGGAAGTCTCACAAGAGAAAGCGCTGA

Peptide Sequence

PEP ID

Zm00001d040033_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:3:23716296:23728529:-1 gene:Zm00001d040033 transcript:Zm00001d040033_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:Factor of DNA methylation 1
Sequence

MLMEPQNLGNTDDQFVWPWMGVLVNVPTEWKNGRQVGESGNRLKEQLSRFCPQKVIPLWS
YRGHTGNAIVEFAKDWTGFKNALAFENHFEAEGYGKRDWKLKYSGSEMFGWVARADDHRC
QGPIGDYLRKNGDLKTVGDLETEGTRKTDKLVANLASQIEVKNKHVQELESKCNETTASL
DRMMEQREQILQKYNEEIRKMQQIARRHSQMIIDDNKKLHKELESKMQELDLRSKELDDI
ALQRDCDRRNLQQEKEKNKIKTKHLMMATMEQQKADENVLKLVEEHKREKQAALGKILRL
QQQLDAKQKLELEVQTLESKMKVMMHMPGDQDSESKKKMDELAEELKEKVDELEAMESLN
QTLIIKERKSNDELQHARKELIDGFMELAVVGRANIGIKRMGELDLKAFGIACKKRLPKE
DAEVISATLCSKWQEEIRNPSWYPFKVKVVDGKEMEILKEDDEMLQELKEEHGEEIYGLV
TKALLEINEYNPSGRYPVPELWNYKEGRKATLKEAVQHVMRQWKSHKRKR

Transcript Sequence

Transcript ID

Zm00001d040033_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:23716296:23728529:-1 gene:Zm00001d040033 gene_biotype:protein_coding transcript_biotype:protein_coding description:Factor of DNA methylation 1
Sequence

CGTCTACATCCTGTCTCTCCTCGCACTCTCCGTTCTCCCGCCGCTTCTGGTCTCGGAGGT
CGCAGCATCTGATGCTTATGGAGCCCCAAAATCTTGGAAACACAGACGATCAGTTTGTCT
GGCCTTGGATGGGTGTTCTAGTTAATGTGCCTACTGAGTGGAAGAATGGGCGCCAAGTTG
GAGAGAGTGGAAATCGGCTTAAAGAGCAACTTTCACGCTTCTGCCCTCAGAAGGTTATTC
CTTTATGGAGTTATAGAGGTCACACCGGCAATGCTATTGTTGAGTTTGCAAAAGACTGGA
CTGGCTTCAAAAATGCGCTTGCCTTTGAAAATCATTTTGAGGCCGAGGGATATGGCAAAA
GGGATTGGAAGCTGAAGTACAGTGGGTCAGAGATGTTTGGATGGGTTGCAAGAGCTGATG
ATCATAGATGCCAAGGGCCTATAGGAGACTATTTGCGAAAAAATGGTGATCTGAAAACTG
TTGGTGATCTTGAAACTGAAGGGACCCGTAAAACTGACAAGCTTGTGGCAAATTTAGCTA
GTCAGATTGAAGTAAAGAACAAGCATGTGCAAGAACTGGAATCCAAGTGCAATGAGACGA
CCGCATCACTTGACAGGATGATGGAGCAAAGGGAGCAGATACTCCAGAAGTATAATGAAG
AAATTCGCAAGATGCAGCAAATTGCTCGTAGGCATTCGCAGATGATCATTGATGATAATA
AAAAACTCCACAAAGAGTTGGAGTCCAAGATGCAGGAACTTGACTTAAGATCCAAGGAGC
TTGATGACATAGCTCTGCAAAGGGATTGTGACAGAAGAAATCTTCAGCAAGAGAAGGAAA
AGAACAAAATTAAAACTAAGCATCTCATGATGGCAACAATGGAGCAACAGAAGGCCGACG
AGAATGTGCTTAAGCTTGTCGAAGAACATAAGAGAGAGAAACAAGCTGCTCTAGGGAAGA
TTCTCAGGTTACAACAACAATTGGACGCCAAACAGAAGCTTGAACTGGAAGTACAAACGC
TGGAAAGCAAGATGAAAGTTATGATGCATATGCCAGGTGATCAGGATTCTGAGTCAAAGA
AGAAGATGGATGAACTTGCTGAGGAGCTGAAGGAAAAGGTCGATGAATTGGAAGCAATGG
AGTCTCTGAACCAAACTCTGATTATCAAGGAAAGGAAGAGCAACGATGAGTTGCAACACG
CTCGGAAGGAGCTGATAGATGGCTTTATGGAGCTTGCTGTTGTTGGCCGAGCTAACATAG
GTATAAAGAGAATGGGTGAGCTTGATCTCAAAGCATTCGGAATTGCTTGCAAGAAAAGGT
TACCAAAGGAGGATGCAGAAGTCATTTCTGCTACCCTTTGTTCAAAGTGGCAAGAAGAAA
TTAGAAACCCAAGCTGGTACCCTTTTAAGGTTAAGGTGGTGGATGGGAAAGAAATGGAAA
TTCTCAAAGAGGACGATGAGATGCTCCAGGAGCTGAAAGAAGAGCACGGTGAAGAAATTT
ATGGGTTGGTAACAAAGGCCCTGCTTGAGATCAATGAGTACAACCCTAGTGGCCGCTATC
CTGTACCAGAGCTGTGGAACTACAAGGAGGGCCGTAAAGCAACACTGAAGGAAGCCGTCC
AGCACGTCATGAGGCAGTGGAAGTCTCACAAGAGAAAGCGCTGAGCAAATTGGTTGCTGG
GTTCTTCTGCCTGCCCCCTATTAACTCGATAGTCGATACTGGGTAGCATTAGGTCGTAGC
TTTTAATTAACTCCTAATGATGAGTGGGTAACAGTGGCTGGCTAATATTAACGTTAAGTT
GCCGGAGGTTCGGTCTGGATTCTTTTGTTGGTAGTGTATACGAATGCTGTTAGTCGGT