Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d040010_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:3:22854232:22860850:1 gene:Zm00001d040010 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGCGATGGACGACCTCGCGGGCGCCTCCTCCTCCTCCTCCATGGCGGCGGCCGCCTCC
TCCGACCCCTCGCACGGCTGGCAGACGGTGTCGTATCCCAAGCGCAACCGCAAGCAGGCG
CAGCCGCCCCGCACCACGGCGCCCGATCTGGCGCTGCAGTCCAACGGCAAGCCTGGCGGC
GTCTTCGACGCCGTCGAGAAGCGCTCCCAGGAGCGCCACCGCGCGCTGCAGCAGCAGCTC
GCCTCCAGGGCGGCCGACCTCGACGACGCGCGGATCGCCGTTGCCACGGGCGCCGCCTAC
TCCGACGACGACGACTCCGACGAGGCCGCTGCCCCGCGCCAGGAGGGAGAGGTCAAGAAG
CCTAAGAAGCCCAAGGTGAAGAAGCCGAAGGTGACGGTCGCCGAGGCCGCCGTCCTGATC
GACGCCGAGAACCTCGCAGCGCACCTCTTCGAGATCTCGGCATCGTACGAGAATCAACAG
GACATTCAGCTCATGAGGTTTGCTGATTACTTTGGCCGGGCATTTGCAGCTGTGAGCGCA
TCTCAATTTCCATGGGCAAAGATGTTCAAAGAATCAACAGTGTCCAAGATGGTTGATATC
CCACTGTGCCATATATCTGAGGCTGTGATCAAGACTGTGAGTGATTGGATCAGTCAAAGA
TCTTCTGATGCCCTGGGAGACTTTGTTTTGTGGTGCATAGATAGCATCATGTCTGAATTG
TCAGGTCCATCAGCTGGCCCTAAGGGTTCAAAGAAGGTTGCACAACAGTCTCCAAGGGCC
CAGGTTGCAATCTTTGTTGTTCTTGCCATGACTTTAAGAAGAAAGCCTGATGTACTGGTA
AATGTTATGCCAAAGATAATGGGAAACAATAAATATCTGGGACAGGAAAAGCTTCCCATC
ATTGTCTGGGTTATTGCTCAGGCCTCTCAAGGTGACCTAGTGTCTGGCATGTTTTGCTGG
GCTCATTCTCTATTTCCCACATTATGTGCGAAGTCAAGTGGGAATCCCCTTGCAAGAGAT
TTGGTTTTGCAGTTGCTTGAAAGAATTTTGTCTGTCACCAAAGCTCGTTCTATATTATTG
AATGGTGCTGTTAGAAAGGGAGAACGCTTAGTTCCCCCTGTTTCATTTGACTTGTTCATG
AGAGCCACATTTCCTGTTTCTAATGCTCGAGTGAAGGCTACAGAAAGGTTTGAAGCAGCC
TACCCAATAATCAAGGAGTTGGCTCTTGCCGGTCCTCCTGGCTCAAAAACTGTGAAACAA
GCATCACAACAGCTTTTACCTTTGTGTGCAAAAGCAATGCAAGAAAACAACGCAGAGCTC
ACCAGGGAGGCTGTTGATGTTTTCATTTGGTGCTTAACTCAAAATGCAGAGTCTTACAAG
CAGTGGGAAAGAATTTATCTTGAAAATATTGAAGCCAGTGTTGCTGTCCTGAGCAAAGTT
GTGATTGATTGGAGGGATGTGTCTCCTAAGCTCAGTTCTGAAGCTCTCAAGGCAACAGTG
AAGAACTTTAAGGCTAAGAATGAGGCTGCGCTGGAGTCCACAACAGATGCTGGAAAGCAG
GCATCTATCAAAGAAGCAGACAAGCACTGCAAGGCGATCTTTGGAAAGCTGACCCGTGGC
GCCACCTGCCTGAAGAGCAGCCTGGTGGTCATCGCGCTCGCTGTTGCTGCTAGTTACGTG
CTGTCTCCTGGCATGGACCTCGAGAAGGTCCAGGCGATGGTCTCATCGCACCTGTCGTTC
TAA

Peptide Sequence

PEP ID

Zm00001d040010_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:3:22854232:22860850:1 gene:Zm00001d040010 transcript:Zm00001d040010_T003 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MAMDDLAGASSSSSMAAAASSDPSHGWQTVSYPKRNRKQAQPPRTTAPDLALQSNGKPGG
VFDAVEKRSQERHRALQQQLASRAADLDDARIAVATGAAYSDDDDSDEAAAPRQEGEVKK
PKKPKVKKPKVTVAEAAVLIDAENLAAHLFEISASYENQQDIQLMRFADYFGRAFAAVSA
SQFPWAKMFKESTVSKMVDIPLCHISEAVIKTVSDWISQRSSDALGDFVLWCIDSIMSEL
SGPSAGPKGSKKVAQQSPRAQVAIFVVLAMTLRRKPDVLVNVMPKIMGNNKYLGQEKLPI
IVWVIAQASQGDLVSGMFCWAHSLFPTLCAKSSGNPLARDLVLQLLERILSVTKARSILL
NGAVRKGERLVPPVSFDLFMRATFPVSNARVKATERFEAAYPIIKELALAGPPGSKTVKQ
ASQQLLPLCAKAMQENNAELTREAVDVFIWCLTQNAESYKQWERIYLENIEASVAVLSKV
VIDWRDVSPKLSSEALKATVKNFKAKNEAALESTTDAGKQASIKEADKHCKAIFGKLTRG
ATCLKSSLVVIALAVAASYVLSPGMDLEKVQAMVSSHLSF

Transcript Sequence

Transcript ID

Zm00001d040010_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:22854232:22860850:1 gene:Zm00001d040010 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCATCCCTCGTCCTCGTCTCTCTCACAGCTGCTTTCTTCCTTCCTGTTCCTGCTCGTCGC
CTCTCGAAAGCCAGGAGGAGTCTCGCCTCCCCCTCCTCGCGCGCGTGGCAGCTATGGCGA
TGGACGACCTCGCGGGCGCCTCCTCCTCCTCCTCCATGGCGGCGGCCGCCTCCTCCGACC
CCTCGCACGGCTGGCAGACGGTGTCGTATCCCAAGCGCAACCGCAAGCAGGCGCAGCCGC
CCCGCACCACGGCGCCCGATCTGGCGCTGCAGTCCAACGGCAAGCCTGGCGGCGTCTTCG
ACGCCGTCGAGAAGCGCTCCCAGGAGCGCCACCGCGCGCTGCAGCAGCAGCTCGCCTCCA
GGGCGGCCGACCTCGACGACGCGCGGATCGCCGTTGCCACGGGCGCCGCCTACTCCGACG
ACGACGACTCCGACGAGGCCGCTGCCCCGCGCCAGGAGGGAGAGGTCAAGAAGCCTAAGA
AGCCCAAGGTGAAGAAGCCGAAGGTGACGGTCGCCGAGGCCGCCGTCCTGATCGACGCCG
AGAACCTCGCAGCGCACCTCTTCGAGATCTCGGCATCGTACGAGAATCAACAGGACATTC
AGCTCATGAGGTTTGCTGATTACTTTGGCCGGGCATTTGCAGCTGTGAGCGCATCTCAAT
TTCCATGGGCAAAGATGTTCAAAGAATCAACAGTGTCCAAGATGGTTGATATCCCACTGT
GCCATATATCTGAGGCTGTGATCAAGACTGTGAGTGATTGGATCAGTCAAAGATCTTCTG
ATGCCCTGGGAGACTTTGTTTTGTGGTGCATAGATAGCATCATGTCTGAATTGTCAGGTC
CATCAGCTGGCCCTAAGGGTTCAAAGAAGGTTGCACAACAGTCTCCAAGGGCCCAGGTTG
CAATCTTTGTTGTTCTTGCCATGACTTTAAGAAGAAAGCCTGATGTACTGGTAAATGTTA
TGCCAAAGATAATGGGAAACAATAAATATCTGGGACAGGAAAAGCTTCCCATCATTGTCT
GGGTTATTGCTCAGGCCTCTCAAGGTGACCTAGTGTCTGGCATGTTTTGCTGGGCTCATT
CTCTATTTCCCACATTATGTGCGAAGTCAAGTGGGAATCCCCTTGCAAGAGATTTGGTTT
TGCAGTTGCTTGAAAGAATTTTGTCTGTCACCAAAGCTCGTTCTATATTATTGAATGGTG
CTGTTAGAAAGGGAGAACGCTTAGTTCCCCCTGTTTCATTTGACTTGTTCATGAGAGCCA
CATTTCCTGTTTCTAATGCTCGAGTGAAGGCTACAGAAAGGTTTGAAGCAGCCTACCCAA
TAATCAAGGAGTTGGCTCTTGCCGGTCCTCCTGGCTCAAAAACTGTGAAACAAGCATCAC
AACAGCTTTTACCTTTGTGTGCAAAAGCAATGCAAGAAAACAACGCAGAGCTCACCAGGG
AGGCTGTTGATGTTTTCATTTGGTGCTTAACTCAAAATGCAGAGTCTTACAAGCAGTGGG
AAAGAATTTATCTTGAAAATATTGAAGCCAGTGTTGCTGTCCTGAGCAAAGTTGTGATTG
ATTGGAGGGATGTGTCTCCTAAGCTCAGTTCTGAAGCTCTCAAGGCAACAGTGAAGAACT
TTAAGGCTAAGAATGAGGCTGCGCTGGAGTCCACAACAGATGCTGGAAAGCAGGCATCTA
TCAAAGAAGCAGACAAGCACTGCAAGGCGATCTTTGGAAAGCTGACCCGTGGCGCCACCT
GCCTGAAGAGCAGCCTGGTGGTCATCGCGCTCGCTGTTGCTGCTAGTTACGTGCTGTCTC
CTGGCATGGACCTCGAGAAGGTCCAGGCGATGGTCTCATCGCACCTGTCGTTCTAAACAT
ACCTGTCCAGAATCTCCAGACGTGGATCTAAATTATACGAGCCATCCAAAGGGGATGGCT
CACTCATCAGTGAAGAGAGCTCAGGGGGTGAGAATAAGAGGGGGATAGGCGCTAGAACCG
AAAGGGTACAGTTTCCTGAGTTGCCTTTTTTTATTTTTCCCGCGTCTCCTCGAGCAGCAG
TGCGTGGGAGGAGACGCAGTCGACTTTGCAGGGAGTTGGTTAATCGGTAGACTGATGGGT
GCGAAGAAGGTCAAGTCAAACGGCTCAACCAGAGGATTAACACCTTTGCTTTTCTCTTTC
TGCATCTGAGATGATTGCAAACAGTTTTGGTTTAAAAATTAAGAATCTTGAATCGTATTC
GGTGCTGTGTGCTTGTCGGCTAAATGTATCTGTTGCGTTGATATCCGATTAAATTGCGTG
TGATGCTGTGCTCGTGTCAGTGTGCTGTTGTCGAAGATCTCCCTTTTTGCAGGTGTGAAT
GTGATGCCTGAAGGCCTTTTGAAACATGTTCCATTTTTTTGGACGCCGGAGGTGCTGGTT
AATTTCTGGTTAATTTATTTATTTGAGGAATCGGTCTGAATCCCAAGGGTCTGTATGTGC
AGGTGTGATGTCTGATGTTGGAGCGTGAAGATCTTTTGAAATATGTTGCATTTCCAGATG
GTTTTTGGACGAGGGAGATGCTGGTTAATTTCTGGGTTTTTTTATTTGAGGATTCGATCT
GAATCTCAAGGGACTGTATGTTATCTACTGTCTCTTGGTGGTGTGGATACTGTGGATGAG
AAGGTTTTCCTTCATGCCCGATTATTATCTGCAGCTTATGTGGGACTGGTCCAGATGTCA
ATTTTTTATGATCTACCATATCATTTTTC