Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d039966_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:3:20997443:20999788:1 gene:Zm00001d039966 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	ATGGGCAAGTCCGGCGCAAAAAAGAAGAAGCCGGCCACCGCCGCCGCCGCCGCCGCCGCA AAGCCGCCGCCCGCCTCGGTTGAGCTGAAGGCAACGCCGTCCTCGTCTTCTTTACCCGCG GCGAACGGTGCGGCGCCCCACCAGGTGGTGGACGCGGGCGTCCTCTTGCGCCGCGCACAC GAGCTCAAGGAGGAGGGCAACCGCCTGTTTCAGTCGCGCGACTACGCCGGGGCGCTGCGC CAATACGAGCTGGCGCTCCGCCTCGCCCCGCGCGGCCATCCCGACCGCGCCGTCTTCCAC AGCAATCGCGCGGCATGCCTCCTCCAGCTCCGCCCCGTAGACCACGAGGCCGTCGCGCAG GAGTGCTCCCTCGCGCTCCAGGCCGAGCCACGCTTTCCGCGCGCTCTCCTCCGCCGCGCC CGCGCGCTCGAGGCGCTCGGCCGCCACGAGCTCGCCCTCGCCGACGCGCTGGCGCTCCTT GCGCTCGACCCTGACCACCGCGAAGCCATCGACCTCTCCTACCGACTACGCTCCCGTGTC AACGCATCCTCTGCTGCCTCCGCTTCCTCGGCACCCGAGCCCACCAGCCGGCCCTCCCCC GCTGCCCTTGGTGCCTCCGCCGTTGTCGCCGGACTTGGCCATTCCCTCCCCGCTCGCTCA TTCCCTAAGAAACAACCACCACCAGCCTCTCCTGCTAACTTGCAGCCAAATCTCGCAGTG ATTCCAAAATCTAACCCGCCACCGTTGCCCAAGCTGGTGCCTTTCTCCAATTCTCCGCCA TCTTCAACCAAGCCTTTGGCTGCAGATAGCTCCGAGAAGGCCATGACGCCTCCAGTTGCC TCTTTGCTACCGGAAAGAGCGGCACCACTTATAAATAAAAAGGTTGTGACGAGATGGAGG CCTCTCAAGCTGGTGTATGACCACGACATTAGGCTTGGGCAGGTTCCAGAGAAATGCAGC TTCCGAACACTTCGTGAGTTTGTAGCTAAGAGGTTCCCATCATCCAAGGCAGTGTTGATT AAATATAAGGATGCTGATGGTGATCTAGTTACCATCACATCAACAGAAGAGCTCCGGTTA GCTGAATTATTCATTGATAAAGTTGGCCACGAGGTTGTAGAAAATGGGAGGGAGGATGAC AATAAGCTCCCGGTGTTGAGGCTGCACCTTGTTGAAGTTAGCCCAGAACAGGAACCAACT TTGCCATTGGAAGAAGAGAAGTTGGAGGAGGATGAGGAATTGTTGATCAATGGTGAAGAT AGCACTTTACATGCTTTAGCAGTGGTAACCGACGCAGAGGTGGTGAAGCAAGATGTTGAG AACAGATCTGCTGATCAAAGTGTGGAGACAGGGAAGAATGATTGTGGCCATGCCGAGTGC AAGGAAGCTGAGATTGATGATTGGTTGCTTCAGTTTGCAGATTTGTTCCGGAACCAGGTT GGGATTGATGCAGATGCACATTTAGACCTGCATGAGTTGGGCATGGAGCTGTGCTCCGAG GCTCTCGAGGAAACTGTGACAAGCATGGAGGCTCAGGTCCTTTTTGAGTTGGCTGCTTCT AAATTTCAGGAGGTTGCTGCTTTGGCCTTATTCAATTGGGGAAATGTGCACATGTGTGAA GCAAGGAAGCGCATCCCTCTCGATGAATCTGCTCCAAAGGAAGTCATGGCTGCTCAGCTC CGCACAGCTTATTATTGGGTGAAGGAGAGGTATGCTCTTGCAGGGCACAAATATGAGGAG GCCCTTAAAATCAAGCCAGACTTCTATGAAGGGCTTCTTGCTTTAGGCCAGCAACACTTC GAGACTGCAAAGCTTCATTGGTCATATGCACTGGCAGATAAGGCTGACCTATCTACCTGG GATTCTTTGGAAACATTCAAGCTTTTTGATAGCGCTGAGCAGAACATGAGGGCTGCAACA GAGATGTGGGAGAAGGTGGAAGAACAGAGAATGGCAGAGTTAAAAGAACCAGGCGCATGT GATAAGGATGGGGTACTGAGGAAAAGGCAGCACGGTGCAGGTGGTCAACCGGAGTTGACA CCAGAAGAAGCAGCTGAGCAGGCAGCAGTAATGAGGCAACAGATTCACCTCTTCTGGGGT AATATGCTTTTCGAGCGTTCCCAAGTGGAGTTTAAGCTCAGTGTTGGTGACTGGAAGACA AATCTTGATGCATCTGTTGAAAGGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATTTTG ACAGTGTTGAAAAATCACTTTTCTAATGTAGCCTCTGAGTGTGAAGAGAAGAAAGTCATG ACTTCAGGCACAGAAATTTCCCAAACAAATGACAATGTTGAGGATAAGTGTGTGGTTGAA ACCTAA

Peptide Sequence

PEP ID	Zm00001d039966_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:3:20997443:20999788:1 gene:Zm00001d039966 transcript:Zm00001d039966_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	MGKSGAKKKKPATAAAAAAAKPPPASVELKATPSSSSLPAANGAAPHQVVDAGVLLRRAH ELKEEGNRLFQSRDYAGALRQYELALRLAPRGHPDRAVFHSNRAACLLQLRPVDHEAVAQ ECSLALQAEPRFPRALLRRARALEALGRHELALADALALLALDPDHREAIDLSYRLRSRV NASSAASASSAPEPTSRPSPAALGASAVVAGLGHSLPARSFPKKQPPPASPANLQPNLAV IPKSNPPPLPKLVPFSNSPPSSTKPLAADSSEKAMTPPVASLLPERAAPLINKKVVTRWR PLKLVYDHDIRLGQVPEKCSFRTLREFVAKRFPSSKAVLIKYKDADGDLVTITSTEELRL AELFIDKVGHEVVENGREDDNKLPVLRLHLVEVSPEQEPTLPLEEEKLEEDEELLINGED STLHALAVVTDAEVVKQDVENRSADQSVETGKNDCGHAECKEAEIDDWLLQFADLFRNQV GIDADAHLDLHELGMELCSEALEETVTSMEAQVLFELAASKFQEVAALALFNWGNVHMCE ARKRIPLDESAPKEVMAAQLRTAYYWVKERYALAGHKYEEALKIKPDFYEGLLALGQQHF ETAKLHWSYALADKADLSTWDSLETFKLFDSAEQNMRAATEMWEKVEEQRMAELKEPGAC DKDGVLRKRQHGAGGQPELTPEEAAEQAAVMRQQIHLFWGNMLFERSQVEFKLSVGDWKT NLDASVERFKLAGASESDILTVLKNHFSNVASECEEKKVMTSGTEISQTNDNVEDKCVVE T

Transcript Sequence

Transcript ID	Zm00001d039966_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:3:20997443:20999788:1 gene:Zm00001d039966 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	ATGGGCAAGTCCGGCGCAAAAAAGAAGAAGCCGGCCACCGCCGCCGCCGCCGCCGCCGCA AAGCCGCCGCCCGCCTCGGTTGAGCTGAAGGCAACGCCGTCCTCGTCTTCTTTACCCGCG GCGAACGGTGCGGCGCCCCACCAGGTGGTGGACGCGGGCGTCCTCTTGCGCCGCGCACAC GAGCTCAAGGAGGAGGGCAACCGCCTGTTTCAGTCGCGCGACTACGCCGGGGCGCTGCGC CAATACGAGCTGGCGCTCCGCCTCGCCCCGCGCGGCCATCCCGACCGCGCCGTCTTCCAC AGCAATCGCGCGGCATGCCTCCTCCAGCTCCGCCCCGTAGACCACGAGGCCGTCGCGCAG GAGTGCTCCCTCGCGCTCCAGGCCGAGCCACGCTTTCCGCGCGCTCTCCTCCGCCGCGCC CGCGCGCTCGAGGCGCTCGGCCGCCACGAGCTCGCCCTCGCCGACGCGCTGGCGCTCCTT GCGCTCGACCCTGACCACCGCGAAGCCATCGACCTCTCCTACCGACTACGCTCCCGTGTC AACGCATCCTCTGCTGCCTCCGCTTCCTCGGCACCCGAGCCCACCAGCCGGCCCTCCCCC GCTGCCCTTGGTGCCTCCGCCGTTGTCGCCGGACTTGGCCATTCCCTCCCCGCTCGCTCA TTCCCTAAGAAACAACCACCACCAGCCTCTCCTGCTAACTTGCAGCCAAATCTCGCAGTG ATTCCAAAATCTAACCCGCCACCGTTGCCCAAGCTGGTGCCTTTCTCCAATTCTCCGCCA TCTTCAACCAAGCCTTTGGCTGCAGATAGCTCCGAGAAGGCCATGACGCCTCCAGTTGCC TCTTTGCTACCGGAAAGAGCGGCACCACTTATAAATAAAAAGGTTGTGACGAGATGGAGG CCTCTCAAGCTGGTGTATGACCACGACATTAGGCTTGGGCAGGTTCCAGAGAAATGCAGC TTCCGAACACTTCGTGAGTTTGTAGCTAAGAGGTTCCCATCATCCAAGGCAGTGTTGATT AAATATAAGGATGCTGATGGTGATCTAGTTACCATCACATCAACAGAAGAGCTCCGGTTA GCTGAATTATTCATTGATAAAGTTGGCCACGAGGTTGTAGAAAATGGGAGGGAGGATGAC AATAAGCTCCCGGTGTTGAGGCTGCACCTTGTTGAAGTTAGCCCAGAACAGGAACCAACT TTGCCATTGGAAGAAGAGAAGTTGGAGGAGGATGAGGAATTGTTGATCAATGGTGAAGAT AGCACTTTACATGCTTTAGCAGTGGTAACCGACGCAGAGGTGGTGAAGCAAGATGTTGAG AACAGATCTGCTGATCAAAGTGTGGAGACAGGGAAGAATGATTGTGGCCATGCCGAGTGC AAGGAAGCTGAGATTGATGATTGGTTGCTTCAGTTTGCAGATTTGTTCCGGAACCAGGTT GGGATTGATGCAGATGCACATTTAGACCTGCATGAGTTGGGCATGGAGCTGTGCTCCGAG GCTCTCGAGGAAACTGTGACAAGCATGGAGGCTCAGGTCCTTTTTGAGTTGGCTGCTTCT AAATTTCAGGAGGTTGCTGCTTTGGCCTTATTCAATTGGGGAAATGTGCACATGTGTGAA GCAAGGAAGCGCATCCCTCTCGATGAATCTGCTCCAAAGGAAGTCATGGCTGCTCAGCTC CGCACAGCTTATTATTGGGTGAAGGAGAGGTATGCTCTTGCAGGGCACAAATATGAGGAG GCCCTTAAAATCAAGCCAGACTTCTATGAAGGGCTTCTTGCTTTAGGCCAGCAACACTTC GAGACTGCAAAGCTTCATTGGTCATATGCACTGGCAGATAAGGCTGACCTATCTACCTGG GATTCTTTGGAAACATTCAAGCTTTTTGATAGCGCTGAGCAGAACATGAGGGCTGCAACA GAGATGTGGGAGAAGGTGGAAGAACAGAGAATGGCAGAGTTAAAAGAACCAGGCGCATGT GATAAGGATGGGGTACTGAGGAAAAGGCAGCACGGTGCAGGTGGTCAACCGGAGTTGACA CCAGAAGAAGCAGCTGAGCAGGCAGCAGTAATGAGGCAACAGATTCACCTCTTCTGGGGT AATATGCTTTTCGAGCGTTCCCAAGTGGAGTTTAAGCTCAGTGTTGGTGACTGGAAGACA AATCTTGATGCATCTGTTGAAAGGTTTAAGTTGGCTGGAGCTTCAGAATCAGATATTTTG ACAGTGTTGAAAAATCACTTTTCTAATGTAGCCTCTGAGTGTGAAGAGAAGAAAGTCATG ACTTCAGGCACAGAAATTTCCCAAACAAATGACAATGTTGAGGATAAGTGTGTGGTTGAA ACCTAA