Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d039916_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:3:19336005:19339187:1 gene:Zm00001d039916 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p family protein
Sequence

ATGGAGCCGCTGCCGTCGGCGACGGCCGCCGGCGTGGGGGGGCCTGGGCCCGGGTACCCC
GAGTCCACGGAGTCTTCTCCACGCAGCCGGGGTGGGGATTCGTGGGACGAGCCTTTCCCG
TCCTCCGCGGCGGCGGCGGCCGCTGCTGCCGGCGGTGGGGGCCGGCTCCGCCTGATGTGC
AGCTTCGGGGGACGGATCGTCCCGCGCCCGACCGATAAGTCGCTCTGCTACCTTGGCGGG
GAGACCAGGATCGTGGCCGTGGACCGGCACGCTTCGCTCGCCGATGTCCACGCGCGCCTC
TCGCGGTCGCTGCTGGGCGGCCGCCCCTTCACGCTCAAGTATCAGCTACCCAACGAGGAC
CTGGACTCCCTCATCTCCGTCTCTACGGACGAGGACCTCGACAACCTCGTCGACGAGTAC
GACCGCATCGCTGCGACCTCCTCCGGCGGAGGAACCTCGCGCACCTCCCGGATCCGCCTC
TTCCTCTTCCCCGCCAAGCCCGAGTCCTCGTCCTCGCTCGGCTCCCTGCTCGACGACTCT
TCAAAGTCCGAGAACTGGTTCGTCGACGCCCTCAACAGCGCCATCTCCGGCTCCCTCGAC
GGTATCCCGAGGGGAATCTCCACCGATTCAGCCTCCGTCAACTGCCTTCTCGGCCTCGAG
GACGACTCCTCCGTGCACTCCCGTAGCGGAGTAACCAACTCGGCTCCCACGGAGGACCAG
CGCGCCAGCCAGCCGAAGCTCCAGGCGGGCGCCGCCGCTGCCGCCGTCGGTACCGGGAGG
CACCCGCACGACGTCCAGTCCGTGCCAGACTCGCCGATGCTGGATAAGAACTCCTCGTTC
GGGTCTACCTCCTCGGCCCCGTCGCTATCGAATCTTCCGCCTATACGCGTGCGGCCGGAG
GACCGCCCGTCGGACGCCCGCATCATGCAACCTACCGCCGTCGAGGACCACTTCGCGCAG
ATGGGAATCTCCGAGCAGCAGCTGCCCATGTATATACAAGCTCAACAGCAGGTGCCGATC
CCTGCTATGACCGGCATGTCGCCATCTGAGGCGTCCAGCCGAATGTTCTCTGACGATGAT
AAGTCCGATCACGGTGGTGGCGGAGGTCGGAAACCACAACCTCCCAAGCAGGACGTTCCG
CCGGTTGTTGATCCCACCAATAGAGCTGTGTACTATAATGATAGATCTCCTCCGGCTGAA
TTGAAGCGAGACATGCCGGTGGGAACTGAAGCTGCCAGCTACCGCCTCCCCGTTTCAGCT
CCGGACGCTGCTGCGGCAGCTGCAGCCACCGCCGCGACACAGGCCCCTCCTGGATATGTG
CTTGCCCAGATGCATGCGCCTCCGCCACCGCAGCAACCTCCACCACAGCAGCAACCACAA
CAGCCAGCTCCTCAGCAGATTGTTGCTGCTGGGAATCAACATTTCATCCACAACCCTGCC
ACTGGCACCTTTATTCCAATCCAGTCCTATTACCACCATCCTGTCCATCAGCAGGCACCC
CAGACCATGCAAAGGCAGCAACAGGCACCTACGTTCGACCCAAATACAGGGATGTATTAT
GTTCCTATGCAGCAGAACGCACATCAGGCATATGGCGTGCCTCCTGGTGCACAAGTCACT
TTGCCACCTCCGACCCTTGTTGACACAACGCCAAAGCCAACCGTGCCAATTCCTCAGATG
GCAGTAAGGCCTGAATTGCAACAACCTGGTGTCTACCGAACAACAGCTGCGGCTACCCCT
GCTCCAGCGCCTAATGCAGCACCTGGATATGCTGGGATGGCCTACCACCATGTCATCCAA
TCCCACCACCACCACCACCCTGCGCCGCAGCCTGTAGCAAACATGGCTGGCAACTACGGG
TATGAGTTTGCTGATCCTACGCGCCCGCAAGTCTACTACTCACAGGCAGCTGCACCTCCA
ACATTGCCACAGTATCCGCCCATTGTCTCTCCTGATGCTGGCCAGGCTGAAAAACATTAA

Peptide Sequence

PEP ID

Zm00001d039916_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:3:19336005:19339187:1 gene:Zm00001d039916 transcript:Zm00001d039916_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p family protein
Sequence

MEPLPSATAAGVGGPGPGYPESTESSPRSRGGDSWDEPFPSSAAAAAAAAGGGGRLRLMC
SFGGRIVPRPTDKSLCYLGGETRIVAVDRHASLADVHARLSRSLLGGRPFTLKYQLPNED
LDSLISVSTDEDLDNLVDEYDRIAATSSGGGTSRTSRIRLFLFPAKPESSSSLGSLLDDS
SKSENWFVDALNSAISGSLDGIPRGISTDSASVNCLLGLEDDSSVHSRSGVTNSAPTEDQ
RASQPKLQAGAAAAAVGTGRHPHDVQSVPDSPMLDKNSSFGSTSSAPSLSNLPPIRVRPE
DRPSDARIMQPTAVEDHFAQMGISEQQLPMYIQAQQQVPIPAMTGMSPSEASSRMFSDDD
KSDHGGGGGRKPQPPKQDVPPVVDPTNRAVYYNDRSPPAELKRDMPVGTEAASYRLPVSA
PDAAAAAAATAATQAPPGYVLAQMHAPPPPQQPPPQQQPQQPAPQQIVAAGNQHFIHNPA
TGTFIPIQSYYHHPVHQQAPQTMQRQQQAPTFDPNTGMYYVPMQQNAHQAYGVPPGAQVT
LPPPTLVDTTPKPTVPIPQMAVRPELQQPGVYRTTAAATPAPAPNAAPGYAGMAYHHVIQ
SHHHHHPAPQPVANMAGNYGYEFADPTRPQVYYSQAAAPPTLPQYPPIVSPDAGQAEKH

Transcript Sequence

Transcript ID

Zm00001d039916_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:3:19336005:19339187:1 gene:Zm00001d039916 gene_biotype:protein_coding transcript_biotype:protein_coding description:Octicosapeptide/Phox/Bem1p family protein
Sequence

AAGCGTAGCCAGAGCAGCAAACCACCCCCCTTCCTCGCCCGTTCGCTTCCTCATGGAGCC
GCTGCCGTCGGCGACGGCCGCCGGCGTGGGGGGGCCTGGGCCCGGGTACCCCGAGTCCAC
GGAGTCTTCTCCACGCAGCCGGGGTGGGGATTCGTGGGACGAGCCTTTCCCGTCCTCCGC
GGCGGCGGCGGCCGCTGCTGCCGGCGGTGGGGGCCGGCTCCGCCTGATGTGCAGCTTCGG
GGGACGGATCGTCCCGCGCCCGACCGATAAGTCGCTCTGCTACCTTGGCGGGGAGACCAG
GATCGTGGCCGTGGACCGGCACGCTTCGCTCGCCGATGTCCACGCGCGCCTCTCGCGGTC
GCTGCTGGGCGGCCGCCCCTTCACGCTCAAGTATCAGCTACCCAACGAGGACCTGGACTC
CCTCATCTCCGTCTCTACGGACGAGGACCTCGACAACCTCGTCGACGAGTACGACCGCAT
CGCTGCGACCTCCTCCGGCGGAGGAACCTCGCGCACCTCCCGGATCCGCCTCTTCCTCTT
CCCCGCCAAGCCCGAGTCCTCGTCCTCGCTCGGCTCCCTGCTCGACGACTCTTCAAAGTC
CGAGAACTGGTTCGTCGACGCCCTCAACAGCGCCATCTCCGGCTCCCTCGACGGTATCCC
GAGGGGAATCTCCACCGATTCAGCCTCCGTCAACTGCCTTCTCGGCCTCGAGGACGACTC
CTCCGTGCACTCCCGTAGCGGAGTAACCAACTCGGCTCCCACGGAGGACCAGCGCGCCAG
CCAGCCGAAGCTCCAGGCGGGCGCCGCCGCTGCCGCCGTCGGTACCGGGAGGCACCCGCA
CGACGTCCAGTCCGTGCCAGACTCGCCGATGCTGGATAAGAACTCCTCGTTCGGGTCTAC
CTCCTCGGCCCCGTCGCTATCGAATCTTCCGCCTATACGCGTGCGGCCGGAGGACCGCCC
GTCGGACGCCCGCATCATGCAACCTACCGCCGTCGAGGACCACTTCGCGCAGATGGGAAT
CTCCGAGCAGCAGCTGCCCATGTATATACAAGCTCAACAGCAGGTGCCGATCCCTGCTAT
GACCGGCATGTCGCCATCTGAGGCGTCCAGCCGAATGTTCTCTGACGATGATAAGTCCGA
TCACGGTGGTGGCGGAGGTCGGAAACCACAACCTCCCAAGCAGGACGTTCCGCCGGTTGT
TGATCCCACCAATAGAGCTGTGTACTATAATGATAGATCTCCTCCGGCTGAATTGAAGCG
AGACATGCCGGTGGGAACTGAAGCTGCCAGCTACCGCCTCCCCGTTTCAGCTCCGGACGC
TGCTGCGGCAGCTGCAGCCACCGCCGCGACACAGGCCCCTCCTGGATATGTGCTTGCCCA
GATGCATGCGCCTCCGCCACCGCAGCAACCTCCACCACAGCAGCAACCACAACAGCCAGC
TCCTCAGCAGATTGTTGCTGCTGGGAATCAACATTTCATCCACAACCCTGCCACTGGCAC
CTTTATTCCAATCCAGTCCTATTACCACCATCCTGTCCATCAGCAGGCACCCCAGACCAT
GCAAAGGCAGCAACAGGCACCTACGTTCGACCCAAATACAGGGATGTATTATGTTCCTAT
GCAGCAGAACGCACATCAGGCATATGGCGTGCCTCCTGGTGCACAAGTCACTTTGCCACC
TCCGACCCTTGTTGACACAACGCCAAAGCCAACCGTGCCAATTCCTCAGATGGCAGTAAG
GCCTGAATTGCAACAACCTGGTGTCTACCGAACAACAGCTGCGGCTACCCCTGCTCCAGC
GCCTAATGCAGCACCTGGATATGCTGGGATGGCCTACCACCATGTCATCCAATCCCACCA
CCACCACCACCCTGCGCCGCAGCCTGTAGCAAACATGGCTGGCAACTACGGGTATGAGTT
TGCTGATCCTACGCGCCCGCAAGTCTACTACTCACAGGCAGCTGCACCTCCAACATTGCC
ACAGTATCCGCCCATTGTCTCTCCTGATGCTGGCCAGGCTGAAAAACATTAAGCAGACTG
AGCATTGGTGAATTCAGGTATGCCTCAAATTCTAGAGGCCTTGTTATCCGTCTGTTACTT
ATCATTATTGTTGCTACCGCATGTTACATGAATCCGCGTCAAAGAGTGAAGATGTTGCTA
TTAGGCAACTGTGCATTTGCATTGGGATCAAAACAAGCATGCATCATCCAAGGATAGGTT
CAACATAAGGTTTTTATTGGATGGTTCTTGTGTTGGTGAGAGACAGAAGGGTGCCGGATT
AGTTTGGGGGAGTGAAGTGTTGGATCCCTGTTCCAAATTGGTCTCTTTTTTTTTCCCTTT
CTTCTTATTTTGAATAAAATATAGTGTCCAAAAGAACCTGGTGGTAACGAAGAACTCATC
ATCATCATCATCATTTGTGTAGCCCTCTGTATATTTGATCTCATGGATGTCATTCAGGTT
GAGGTGCAGATAAGTGTGTTATTAGCTTGCTTGTAGAAACCTTATGCGAGTTAAATATAT
ATATACATCGGTCCCGTATTGTACTTTGATATTGATGTTGGTATGTTTCTTTTTGTTGAA
TACATTGACTTCGATTTTTCTTGCTGCTTTAGTCGTTCTGGTTCCGTCTACCTCCCAAAT
TTCATCGCAGCACACATAGCATAGCCCTTCTCCGAATCATATGCCATGCCGTTTTGGTGG
GGGCGTTGATTTGCAAAGCAAATCGGCAAAAAAAAAAAAACCGTTTAGGAGCTGTTTGGG
TCTTTTCATTTCGGAAGGATTAGAATCTATTTAATGGACTAGGCTATTTAGATTAAGAAT
AATCAGTTCGAAATTTGATGTTCCACTACTTTCTGAAGTTTGAATCGAAGTCTACCTCAA
ATTAAATTGATAGGATAGACTACGCGATTTGGTTTGAAATTTGGCGTTCCATCATTTTTC
CAAAGTTTAGATGTAAGAATATTTTATAGATGAGAGATGGAAATTGATTCGATATTATCA
CCATCCATATTTGTAAATTTGTATTGTACAACACATTTTTTGGCTCATAAAAATGTACTT
CCG